RNA–Protein interactions for RNA: ENST00000580958.5

SS18-217, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 775 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-217ENST00000580958 TRNP1Q6NT89 227 aa11.05□□□□□ -0.64
SS18-217ENST00000580958 GPR153Q6NV75 609 aa11.05□□□□□ -0.64
SS18-217ENST00000580958 CNKSR3Q6P9H4 555 aa11.05□□□□□ -0.64
SS18-217ENST00000580958 LIN28BQ6ZN17 250 aaKnown RBP eCLIP11.05□□□□□ -0.64
SS18-217ENST00000580958 CLEC20AQ6ZU45 233 aa11.05□□□□□ -0.64
SS18-217ENST00000580958 PIGZQ86VD9 579 aa11.05□□□□□ -0.64
SS18-217ENST00000580958 SCUBE3Q8IX30 993 aa11.05□□□□□ -0.64
SS18-217ENST00000580958 THEM5Q8N1Q8 247 aa11.05□□□□□ -0.64
SS18-217ENST00000580958 OR10T2Q8NGX3 314 aa11.05□□□□□ -0.64
SS18-217ENST00000580958 KHSRPQ92945 711 aaKnown RBP eCLIP11.05□□□□□ -0.641e-7■□□□□ 8.9
SS18-217ENST00000580958 PCED1BQ96HM7 432 aa11.05□□□□□ -0.64
SS18-217ENST00000580958 HSFY1Q96LI6 401 aa11.05□□□□□ -0.64
SS18-217ENST00000580958 TMEM209Q96SK2 561 aa11.05□□□□□ -0.64
SS18-217ENST00000580958 SMOQ99835 787 aa11.05□□□□□ -0.64
SS18-217ENST00000580958 ACBD6Q9BR61 282 aa11.05□□□□□ -0.64
SS18-217ENST00000580958 DDX47Q9H0S4 455 aaKnown RBP11.05□□□□□ -0.64
SS18-217ENST00000580958 ARGLU1Q9NWB6 273 aaPredicted RBP11.05□□□□□ -0.64
SS18-217ENST00000580958 HCSTQ9UBK5 93 aa11.05□□□□□ -0.64
SS18-217ENST00000580958 NR2E1Q9Y466 385 aa11.05□□□□□ -0.64
SS18-217ENST00000580958 GREB1Q4ZG55 1949 aa11.05□□□□□ -0.64
SS18-217ENST00000580958 GOLGA6L10A0A0M3HER8 536 aa11.04□□□□□ -0.64
SS18-217ENST00000580958 TCRBV7S2A1N4TA0A589 114 aa11.04□□□□□ -0.64
SS18-217ENST00000580958 DPYSL4O14531 572 aa11.04□□□□□ -0.64
SS18-217ENST00000580958 NRP1O14786 923 aa11.04□□□□□ -0.64
SS18-217ENST00000580958 RAD51CO43502 376 aa11.04□□□□□ -0.64
SS18-217ENST00000580958 LRCH4O75427 683 aa11.04□□□□□ -0.64
SS18-217ENST00000580958 TADA2AO75478 443 aa11.04□□□□□ -0.64
SS18-217ENST00000580958 ZMYND10O75800 440 aa11.04□□□□□ -0.64
SS18-217ENST00000580958 PDGFRAP16234 1089 aa11.04□□□□□ -0.64
SS18-217ENST00000580958 SLC11A1P49279 550 aa11.04□□□□□ -0.64
SS18-217ENST00000580958 ZNF143P52747 638 aaPredicted RBP11.04□□□□□ -0.64
SS18-217ENST00000580958 CACNA2D1P54289 1103 aa11.04□□□□□ -0.64
SS18-217ENST00000580958 MAP3K7CLP57077 242 aa11.04□□□□□ -0.64
SS18-217ENST00000580958 SLC8A3P57103 927 aa11.04□□□□□ -0.64
SS18-217ENST00000580958 TSPY1Q01534 308 aa11.04□□□□□ -0.64
SS18-217ENST00000580958 SLC25A11Q02978 314 aaKnown RBP11.04□□□□□ -0.64
SS18-217ENST00000580958 ADIGQ0VDE8 80 aa11.04□□□□□ -0.64
SS18-217ENST00000580958 BRD3Q15059 726 aa11.04□□□□□ -0.64
SS18-217ENST00000580958 C15orf59Q2T9L4 293 aaPredicted RBP11.04□□□□□ -0.64
SS18-217ENST00000580958 ZFYVE27Q5T4F4 411 aa11.04□□□□□ -0.64
SS18-217ENST00000580958 LRRC38Q5VT99 294 aa11.04□□□□□ -0.64
SS18-217ENST00000580958 TXNRD3NBQ6F5E7 133 aa11.04□□□□□ -0.64
SS18-217ENST00000580958 FAM171BQ6P995 826 aa11.04□□□□□ -0.64
SS18-217ENST00000580958 NECAB2Q7Z6G3 386 aa11.04□□□□□ -0.64
SS18-217ENST00000580958 ZDHHC17Q8IUH5 632 aa11.04□□□□□ -0.64
SS18-217ENST00000580958 CCDC50Q8IVM0 306 aa11.04□□□□□ -0.64
SS18-217ENST00000580958 ZDHHC14Q8IZN3 488 aa11.04□□□□□ -0.64
SS18-217ENST00000580958 CRIPAKQ8N1N5 446 aa11.04□□□□□ -0.64
SS18-217ENST00000580958 ARFGAP1Q8N6T3 406 aa11.04□□□□□ -0.64
SS18-217ENST00000580958 EXD1Q8NHP7 514 aa11.04□□□□□ -0.64
SS18-217ENST00000580958 HDAC7Q8WUI4 952 aa11.04□□□□□ -0.64
SS18-217ENST00000580958 ACSF2Q96CM8 615 aaPredicted RBP11.04□□□□□ -0.64
SS18-217ENST00000580958 VWCEQ96DN2 955 aa11.04□□□□□ -0.64
SS18-217ENST00000580958 SMARCD1Q96GM5 515 aa11.04□□□□□ -0.64
SS18-217ENST00000580958 PKMYT1Q99640 499 aa11.04□□□□□ -0.64
SS18-217ENST00000580958 HERPUD2Q9BSE4 406 aa11.04□□□□□ -0.64
SS18-217ENST00000580958 CNPY3Q9BT09 278 aa11.04□□□□□ -0.64
SS18-217ENST00000580958 COLEC11Q9BWP8 271 aa11.04□□□□□ -0.64
SS18-217ENST00000580958 PLVAPQ9BX97 442 aa11.04□□□□□ -0.64
SS18-217ENST00000580958 MRPL9Q9BYD2 267 aaKnown RBP11.04□□□□□ -0.64
SS18-217ENST00000580958 RHOBTB2Q9BYZ6 727 aa11.04□□□□□ -0.64
SS18-217ENST00000580958 PLEKHA4Q9H4M7 779 aa11.04□□□□□ -0.64
SS18-217ENST00000580958 ZWILCHQ9H900 591 aa11.04□□□□□ -0.64
SS18-217ENST00000580958 PRDM5Q9NQX1 630 aaPredicted RBP11.04□□□□□ -0.64
SS18-217ENST00000580958 TMLHEQ9NVH6 421 aa11.04□□□□□ -0.64
SS18-217ENST00000580958 ASNSD1Q9NWL6 643 aa11.04□□□□□ -0.64
SS18-217ENST00000580958 MARCH5Q9NX47 278 aa11.04□□□□□ -0.64
SS18-217ENST00000580958 DMGDHQ9UI17 866 aaKnown RBP11.04□□□□□ -0.64
SS18-217ENST00000580958 PLXNA3P51805 1871 aa11.04□□□□□ -0.64
SS18-217ENST00000580958 PI4K2BG5E9Z4 385 aa11.03□□□□□ -0.64
SS18-217ENST00000580958 FSCN2O14926 492 aa11.03□□□□□ -0.64
SS18-217ENST00000580958 PHF2O75151 1096 aa11.03□□□□□ -0.64
SS18-217ENST00000580958 UPP2O95045 317 aa11.03□□□□□ -0.64
SS18-217ENST00000580958 ZRANB2O95218 330 aaKnown RBP eCLIP11.03□□□□□ -0.64
SS18-217ENST00000580958 TRUB2O95900 331 aaKnown RBP11.03□□□□□ -0.64
SS18-217ENST00000580958 RARAP10276 462 aa11.03□□□□□ -0.64
SS18-217ENST00000580958 MIPP30301 263 aa11.03□□□□□ -0.64
SS18-217ENST00000580958 SDC4P31431 198 aa11.03□□□□□ -0.64
SS18-217ENST00000580958 SCNN1AP37088 669 aa11.03□□□□□ -0.64
SS18-217ENST00000580958 YWHAHQ04917 246 aaPredicted RBP11.03□□□□□ -0.64
SS18-217ENST00000580958 ADCY1Q08828 1119 aa11.03□□□□□ -0.64
SS18-217ENST00000580958 IKBKEQ14164 716 aa11.03□□□□□ -0.64
SS18-217ENST00000580958 SMC1AQ14683 1233 aaKnown RBP11.03□□□□□ -0.64
SS18-217ENST00000580958 SIX1Q15475 284 aaPredicted RBP11.03□□□□□ -0.64
SS18-217ENST00000580958 HADHQ16836 314 aaKnown RBP11.03□□□□□ -0.64
SS18-217ENST00000580958 CDO1Q16878 200 aa11.03□□□□□ -0.64
SS18-217ENST00000580958 CCDC14Q49A88 953 aa11.03□□□□□ -0.64
SS18-217ENST00000580958 GLE1Q53GS7 698 aaKnown RBP11.03□□□□□ -0.64
SS18-217ENST00000580958 RAB6CQ53S08 254 aa11.03□□□□□ -0.64
SS18-217ENST00000580958 ARSIQ5FYB1 569 aa11.03□□□□□ -0.64
SS18-217ENST00000580958 WDR93Q6P2C0 686 aa11.03□□□□□ -0.64
SS18-217ENST00000580958 SLC26A9Q7LBE3 791 aa11.03□□□□□ -0.64
SS18-217ENST00000580958 LRRTM3Q86VH5 581 aa11.03□□□□□ -0.64
SS18-217ENST00000580958 PRELID2Q8N945 189 aa11.03□□□□□ -0.64
SS18-217ENST00000580958 ZMIZ2Q8NF64 920 aa11.03□□□□□ -0.64
SS18-217ENST00000580958 KCTD13Q8WZ19 329 aa11.03□□□□□ -0.64
SS18-217ENST00000580958 NDRG1Q92597 394 aaKnown RBP11.03□□□□□ -0.64
SS18-217ENST00000580958 HINFPQ9BQA5 517 aa11.03□□□□□ -0.64
SS18-217ENST00000580958 TMEM175Q9BSA9 504 aa11.03□□□□□ -0.64
SS18-217ENST00000580958 RAB6CQ9H0N0 254 aa11.03□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 17 ms