RNA–Protein interactions for RNA: ENST00000577751.5

SS18-208, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 580 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-208ENST00000577751 SNX30Q5VWJ9 437 aa20.44■□□□□ 0.86
SS18-208ENST00000577751 TMEM270Q6UE05 265 aa20.44■□□□□ 0.86
SS18-208ENST00000577751 SIX5Q8N196 739 aa20.44■□□□□ 0.86
SS18-208ENST00000577751 FBXL6Q8N531 539 aa20.44■□□□□ 0.86
SS18-208ENST00000577751 CELF5Q8N6W0 485 aaKnown RBP20.44■□□□□ 0.86
SS18-208ENST00000577751 ANKRD52Q8NB46 1076 aa20.44■□□□□ 0.86
SS18-208ENST00000577751 USP13Q92995 863 aaPredicted RBP20.44■□□□□ 0.86
SS18-208ENST00000577751 SLC22A12Q96S37 553 aa20.44■□□□□ 0.86
SS18-208ENST00000577751 UBXN6Q9BZV1 441 aa20.44■□□□□ 0.86
SS18-208ENST00000577751 SMG9Q9H0W8 520 aaKnown RBP20.44■□□□□ 0.86
SS18-208ENST00000577751 UBE2TQ9NPD8 197 aaPredicted RBP20.44■□□□□ 0.86
SS18-208ENST00000577751 TDP1Q9NUW8 608 aa20.44■□□□□ 0.86
SS18-208ENST00000577751 PCDHB4Q9Y5E5 795 aa20.44■□□□□ 0.86
SS18-208ENST00000577751 KIF26AQ9ULI4 1882 aaPredicted RBP20.43■□□□□ 0.86
SS18-208ENST00000577751 DPYSL4O14531 572 aa20.43■□□□□ 0.86
SS18-208ENST00000577751 PON1P27169 355 aa20.43■□□□□ 0.86
SS18-208ENST00000577751 ZNF132P52740 706 aa20.43■□□□□ 0.86
SS18-208ENST00000577751 IFRD2Q12894 506 aaPredicted RBP20.43■□□□□ 0.86
SS18-208ENST00000577751 SGO2Q562F6 1265 aa20.43■□□□□ 0.86
SS18-208ENST00000577751 ENOSF1Q7L5Y1 443 aa20.43■□□□□ 0.86
SS18-208ENST00000577751 PDZD8Q8NEN9 1154 aa20.43■□□□□ 0.86
SS18-208ENST00000577751 BPIFB1Q8TDL5 484 aa20.43■□□□□ 0.86
SS18-208ENST00000577751 DNASE1L2Q92874 299 aa20.43■□□□□ 0.86
SS18-208ENST00000577751 IRF7Q92985 503 aa20.43■□□□□ 0.86
SS18-208ENST00000577751 CYP2S1Q96SQ9 504 aa20.43■□□□□ 0.86
SS18-208ENST00000577751 FBXO44Q9H4M3 255 aa20.43■□□□□ 0.86
SS18-208ENST00000577751 KIF9Q9HAQ2 790 aa20.43■□□□□ 0.86
SS18-208ENST00000577751 FANCLQ9NW38 375 aa20.43■□□□□ 0.86
SS18-208ENST00000577751 CA14Q9ULX7 337 aa20.43■□□□□ 0.86
SS18-208ENST00000577751 CCL26Q9Y258 94 aa20.43■□□□□ 0.86
SS18-208ENST00000577751 HELZP42694 1942 aaKnown RBP20.43■□□□□ 0.86
SS18-208ENST00000577751 TRAV19A0A0A6YYK7 116 aa20.42■□□□□ 0.86
SS18-208ENST00000577751 ARNTLO00327 626 aa20.42■□□□□ 0.86
SS18-208ENST00000577751 CHADO15335 359 aa20.42■□□□□ 0.86
SS18-208ENST00000577751 OLFM2O95897 454 aa20.42■□□□□ 0.86
SS18-208ENST00000577751 USP17L7P0C7H9 530 aa20.42■□□□□ 0.86
SS18-208ENST00000577751 ZDHHC11BP0C7U3 371 aa20.42■□□□□ 0.86
SS18-208ENST00000577751 HDCP19113 662 aa20.42■□□□□ 0.86
SS18-208ENST00000577751 PTMSP20962 102 aa20.42■□□□□ 0.86
SS18-208ENST00000577751 GDI1P31150 447 aa20.42■□□□□ 0.86
SS18-208ENST00000577751 MYL5Q02045 173 aa20.42■□□□□ 0.86
SS18-208ENST00000577751 NCAPHQ15003 741 aa20.42■□□□□ 0.86
SS18-208ENST00000577751 SLC44A4Q53GD3 710 aa20.42■□□□□ 0.86
SS18-208ENST00000577751 DPY19L2P1Q6NXN4 242 aa20.42■□□□□ 0.86
SS18-208ENST00000577751 GPRIN1Q7Z2K8 1008 aa20.42■□□□□ 0.86
SS18-208ENST00000577751 TTC30AQ86WT1 665 aa20.42■□□□□ 0.86
SS18-208ENST00000577751 ARL14EPQ8N8R7 260 aaPredicted RBP20.42■□□□□ 0.86
SS18-208ENST00000577751 FBXO32Q969P5 355 aa20.42■□□□□ 0.86
SS18-208ENST00000577751 FAM81BQ96LP2 452 aa20.42■□□□□ 0.86
SS18-208ENST00000577751 BRD9Q9H8M2 597 aa20.42■□□□□ 0.86
SS18-208ENST00000577751 TRPC7Q9HCX4 862 aa20.42■□□□□ 0.86
SS18-208ENST00000577751 SIX2Q9NPC8 291 aa20.42■□□□□ 0.86
SS18-208ENST00000577751 ARHGEF3Q9NR81 526 aa20.42■□□□□ 0.86
SS18-208ENST00000577751 APEX2Q9UBZ4 518 aa20.42■□□□□ 0.86
SS18-208ENST00000577751 CHORDC1Q9UHD1 332 aaPredicted RBP20.42■□□□□ 0.86
SS18-208ENST00000577751 TSPAN16Q9UKR8 245 aa20.42■□□□□ 0.86
SS18-208ENST00000577751 TICRRQ7Z2Z1 1910 aa20.41■□□□□ 0.86
SS18-208ENST00000577751 O00370 1275 aa20.41■□□□□ 0.86
SS18-208ENST00000577751 ZNF263O14978 683 aa20.41■□□□□ 0.86
SS18-208ENST00000577751 OAS1P00973 400 aaKnown RBP20.41■□□□□ 0.86
SS18-208ENST00000577751 CD19P15391 556 aa20.41■□□□□ 0.86
SS18-208ENST00000577751 PDE6CP51160 858 aa20.41■□□□□ 0.86
SS18-208ENST00000577751 KIF11P52732 1056 aa20.41■□□□□ 0.86
SS18-208ENST00000577751 STARD6P59095 220 aa20.41■□□□□ 0.86
SS18-208ENST00000577751 APBA1Q02410 837 aa20.41■□□□□ 0.86
SS18-208ENST00000577751 ARHGAP29Q52LW3 1261 aa20.41■□□□□ 0.86
SS18-208ENST00000577751 SMYD5Q6GMV2 418 aa20.41■□□□□ 0.86
SS18-208ENST00000577751 GJB7Q6PEY0 223 aa20.41■□□□□ 0.86
SS18-208ENST00000577751 RBBP8NLQ8NC74 664 aaPredicted RBP20.41■□□□□ 0.86
SS18-208ENST00000577751 RIN3Q8TB24 985 aa20.41■□□□□ 0.86
SS18-208ENST00000577751 TFAP2BQ92481 460 aa20.41■□□□□ 0.86
SS18-208ENST00000577751 ZSWIM1Q9BR11 485 aa20.41■□□□□ 0.86
SS18-208ENST00000577751 FUCA2Q9BTY2 467 aa20.41■□□□□ 0.86
SS18-208ENST00000577751 RNF38Q9H0F5 515 aa20.41■□□□□ 0.86
SS18-208ENST00000577751 SCML2Q9UQR0 700 aa20.41■□□□□ 0.86
SS18-208ENST00000577751 USP3Q9Y6I4 520 aa20.41■□□□□ 0.86
SS18-208ENST00000577751 KMT2EQ8IZD2 1858 aa20.41■□□□□ 0.86
SS18-208ENST00000577751 MYO16Q9Y6X6 1858 aa20.41■□□□□ 0.86
SS18-208ENST00000577751 CKMP06732 381 aa20.4■□□□□ 0.86
SS18-208ENST00000577751 TCF3P15923 654 aa20.4■□□□□ 0.86
SS18-208ENST00000577751 CLCN5P51795 746 aa20.4■□□□□ 0.86
SS18-208ENST00000577751 MFAP3P55082 362 aa20.4■□□□□ 0.86
SS18-208ENST00000577751 PRKCQQ04759 706 aa20.4■□□□□ 0.86
SS18-208ENST00000577751 KCNMA1Q12791 1236 aa20.4■□□□□ 0.86
SS18-208ENST00000577751 CNGA2Q16280 664 aa20.4■□□□□ 0.86
SS18-208ENST00000577751 PKDCCQ504Y2 493 aa20.4■□□□□ 0.86
SS18-208ENST00000577751 RAB41Q5JT25 222 aa20.4■□□□□ 0.86
SS18-208ENST00000577751 CWF19L1Q69YN2 538 aaKnown RBP20.4■□□□□ 0.86
SS18-208ENST00000577751 LCLAT1Q6UWP7 414 aa20.4■□□□□ 0.86
SS18-208ENST00000577751 YAF2Q8IY57 180 aa20.4■□□□□ 0.86
SS18-208ENST00000577751 HSD3B7Q9H2F3 369 aa20.4■□□□□ 0.86
SS18-208ENST00000577751 ARHGAP26Q9UNA1 814 aa20.4■□□□□ 0.86
SS18-208ENST00000577751 COL4A3Q01955 1670 aa20.39■□□□□ 0.86
SS18-208ENST00000577751 LETM1O95202 739 aaPredicted RBP20.39■□□□□ 0.85
SS18-208ENST00000577751 ABL1P00519 1130 aa20.39■□□□□ 0.85
SS18-208ENST00000577751 ZNF18P17022 549 aa20.39■□□□□ 0.85
SS18-208ENST00000577751 PGFP49763 221 aa20.39■□□□□ 0.85
SS18-208ENST00000577751 TUBP50607 506 aa20.39■□□□□ 0.85
SS18-208ENST00000577751 BCAT1P54687 386 aa20.39■□□□□ 0.85
SS18-208ENST00000577751 SLC7A9P82251 487 aa20.39■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms