RNA–Protein interactions for RNA: ENST00000575513.1

CIITA-210, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 2

Gene CIITA, Length 516 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-210ENST00000575513 HCN4Q9Y3Q4 1203 aa14.37□□□□□ -0.11
CIITA-210ENST00000575513 ZDBF2Q9HCK1 2354 aa14.37□□□□□ -0.11
CIITA-210ENST00000575513 HHLA1C9JL84 531 aa14.36□□□□□ -0.11
CIITA-210ENST00000575513 ARNTLO00327 626 aa14.36□□□□□ -0.11
CIITA-210ENST00000575513 BEST1O76090 585 aa14.36□□□□□ -0.11
CIITA-210ENST00000575513 PRAMEF12O95522 483 aa14.36□□□□□ -0.11
CIITA-210ENST00000575513 PDGFBP01127 241 aaPredicted RBP14.36□□□□□ -0.11
CIITA-210ENST00000575513 ZDHHC11BP0C7U3 371 aa14.36□□□□□ -0.11
CIITA-210ENST00000575513 VDRP11473 427 aa14.36□□□□□ -0.11
CIITA-210ENST00000575513 HDCP19113 662 aa14.36□□□□□ -0.11
CIITA-210ENST00000575513 AOC1P19801 751 aa14.36□□□□□ -0.11
CIITA-210ENST00000575513 COL9A1P20849 921 aa14.36□□□□□ -0.11
CIITA-210ENST00000575513 ACO1P21399 889 aaKnown RBP14.36□□□□□ -0.11
CIITA-210ENST00000575513 EEF1GP26641 437 aaKnown RBP14.36□□□□□ -0.11
CIITA-210ENST00000575513 ADORA2BP29275 332 aa14.36□□□□□ -0.11
CIITA-210ENST00000575513 MTIF2P46199 727 aaKnown RBP14.36□□□□□ -0.11
CIITA-210ENST00000575513 TUBP50607 506 aa14.36□□□□□ -0.11
CIITA-210ENST00000575513 SLC8A3P57103 927 aa14.36□□□□□ -0.11
CIITA-210ENST00000575513 GRM2Q14416 872 aa14.36□□□□□ -0.11
CIITA-210ENST00000575513 MLF2Q15773 248 aaPredicted RBP14.36□□□□□ -0.11
CIITA-210ENST00000575513 STX1AQ16623 288 aa14.36□□□□□ -0.11
CIITA-210ENST00000575513 MAN2A1Q16706 1144 aa14.36□□□□□ -0.11
CIITA-210ENST00000575513 SGO2Q562F6 1265 aa14.36□□□□□ -0.11
CIITA-210ENST00000575513 C1orf228Q6PIY5 440 aa14.36□□□□□ -0.11
CIITA-210ENST00000575513 GBP6Q6ZN66 633 aa14.36□□□□□ -0.11
CIITA-210ENST00000575513 CREBRFQ8IUR6 639 aa14.36□□□□□ -0.11
CIITA-210ENST00000575513 MSANTD3Q96H12 275 aa14.36□□□□□ -0.11
CIITA-210ENST00000575513 OSBPL6Q9BZF3 934 aa14.36□□□□□ -0.11
CIITA-210ENST00000575513 INTS2Q9H0H0 1204 aaKnown RBP14.36□□□□□ -0.11
CIITA-210ENST00000575513 CA14Q9ULX7 337 aa14.36□□□□□ -0.11
CIITA-210ENST00000575513 ARHGAP26Q9UNA1 814 aa14.36□□□□□ -0.11
CIITA-210ENST00000575513 CNTN6Q9UQ52 1028 aa14.36□□□□□ -0.11
CIITA-210ENST00000575513 PTPRDP23468 1912 aa14.36□□□□□ -0.11
CIITA-210ENST00000575513 KANSL1LA0AUZ9 987 aa14.35□□□□□ -0.11
CIITA-210ENST00000575513 MAN2B1O00754 1011 aa14.35□□□□□ -0.11
CIITA-210ENST00000575513 OLFM2O95897 454 aa14.35□□□□□ -0.11
CIITA-210ENST00000575513 OAS1P00973 400 aaKnown RBP14.35□□□□□ -0.11
CIITA-210ENST00000575513 KIF11P52732 1056 aa14.35□□□□□ -0.11
CIITA-210ENST00000575513 SLC7A9P82251 487 aa14.35□□□□□ -0.11
CIITA-210ENST00000575513 STILQ15468 1287 aa14.35□□□□□ -0.11
CIITA-210ENST00000575513 EXOC3L4Q17RC7 722 aa14.35□□□□□ -0.11
CIITA-210ENST00000575513 TMEM270Q6UE05 265 aa14.35□□□□□ -0.11
CIITA-210ENST00000575513 ZNF276Q8N554 614 aa14.35□□□□□ -0.11
CIITA-210ENST00000575513 SCAMP5Q8TAC9 235 aa14.35□□□□□ -0.11
CIITA-210ENST00000575513 FBXO32Q969P5 355 aa14.35□□□□□ -0.11
CIITA-210ENST00000575513 CYP2S1Q96SQ9 504 aa14.35□□□□□ -0.11
CIITA-210ENST00000575513 TUBGCP2Q9BSJ2 902 aa14.35□□□□□ -0.11
CIITA-210ENST00000575513 NDST4Q9H3R1 872 aa14.35□□□□□ -0.11
CIITA-210ENST00000575513 C8orf33Q9H7E9 229 aaPredicted RBP14.35□□□□□ -0.11
CIITA-210ENST00000575513 TBC1D17Q9HA65 648 aa14.35□□□□□ -0.11
CIITA-210ENST00000575513 TRPC7Q9HCX4 862 aa14.35□□□□□ -0.11
CIITA-210ENST00000575513 SCML2Q9UQR0 700 aa14.35□□□□□ -0.11
CIITA-210ENST00000575513 C2orf78A6NCI8 922 aa14.34□□□□□ -0.11
CIITA-210ENST00000575513 CKMP06732 381 aa14.34□□□□□ -0.11
CIITA-210ENST00000575513 PSEN1P49768 467 aa14.34□□□□□ -0.11
CIITA-210ENST00000575513 ZNF132P52740 706 aa14.34□□□□□ -0.11
CIITA-210ENST00000575513 MFAP3P55082 362 aa14.34□□□□□ -0.11
CIITA-210ENST00000575513 NFKBIBQ15653 356 aa14.34□□□□□ -0.11
CIITA-210ENST00000575513 CNGA2Q16280 664 aa14.34□□□□□ -0.11
CIITA-210ENST00000575513 VWA3BQ502W6 1294 aa14.34□□□□□ -0.11
CIITA-210ENST00000575513 TCP11X2Q5H9J9 407 aa14.34□□□□□ -0.11
CIITA-210ENST00000575513 HECTD3Q5T447 861 aa14.34□□□□□ -0.11
CIITA-210ENST00000575513 CWF19L1Q69YN2 538 aaKnown RBP14.34□□□□□ -0.11
CIITA-210ENST00000575513 TRIM65Q6PJ69 517 aa14.34□□□□□ -0.11
CIITA-210ENST00000575513 ZNF852Q6ZMS4 543 aa14.34□□□□□ -0.11
CIITA-210ENST00000575513 RRAGAQ7L523 313 aa14.34□□□□□ -0.11
CIITA-210ENST00000575513 ARL14EPQ8N8R7 260 aaPredicted RBP14.34□□□□□ -0.11
CIITA-210ENST00000575513 FLCNQ8NFG4 579 aa14.34□□□□□ -0.11
CIITA-210ENST00000575513 CSGALNACT1Q8TDX6 532 aa14.34□□□□□ -0.11
CIITA-210ENST00000575513 SLC22A12Q96S37 553 aa14.34□□□□□ -0.11
CIITA-210ENST00000575513 FAM83CQ9BQN1 747 aa14.34□□□□□ -0.11
CIITA-210ENST00000575513 UBE2TQ9NPD8 197 aaPredicted RBP14.34□□□□□ -0.11
CIITA-210ENST00000575513 TLR8Q9NR97 1041 aaKnown RBP14.34□□□□□ -0.11
CIITA-210ENST00000575513 SAMSN1Q9NSI8 373 aaKnown RBP14.34□□□□□ -0.11
CIITA-210ENST00000575513 APEX2Q9UBZ4 518 aa14.34□□□□□ -0.11
CIITA-210ENST00000575513 CHORDC1Q9UHD1 332 aaPredicted RBP14.34□□□□□ -0.11
CIITA-210ENST00000575513 CCL26Q9Y258 94 aa14.34□□□□□ -0.11
CIITA-210ENST00000575513 MRPS17Q9Y2R5 130 aaKnown RBP14.34□□□□□ -0.11
CIITA-210ENST00000575513 SIT1Q9Y3P8 196 aa14.34□□□□□ -0.11
CIITA-210ENST00000575513 NFE2L3Q9Y4A8 694 aa14.34□□□□□ -0.11
CIITA-210ENST00000575513 PCDHB4Q9Y5E5 795 aa14.34□□□□□ -0.11
CIITA-210ENST00000575513 USP3Q9Y6I4 520 aa14.34□□□□□ -0.11
CIITA-210ENST00000575513 KCNJ18B7U540 433 aa14.33□□□□□ -0.12
CIITA-210ENST00000575513 O00370 1275 aa14.33□□□□□ -0.12
CIITA-210ENST00000575513 STK25O00506 426 aa14.33□□□□□ -0.12
CIITA-210ENST00000575513 PON1P27169 355 aa14.33□□□□□ -0.12
CIITA-210ENST00000575513 BCAT1P54687 386 aa14.33□□□□□ -0.12
CIITA-210ENST00000575513 TYRO3Q06418 890 aa14.33□□□□□ -0.12
CIITA-210ENST00000575513 KCNJ12Q14500 433 aa14.33□□□□□ -0.12
CIITA-210ENST00000575513 PDGFRLQ15198 375 aa14.33□□□□□ -0.12
CIITA-210ENST00000575513 ZNF77Q15935 545 aa14.33□□□□□ -0.12
CIITA-210ENST00000575513 RAB41Q5JT25 222 aa14.33□□□□□ -0.12
CIITA-210ENST00000575513 MIIPQ5JXC2 388 aa14.33□□□□□ -0.12
CIITA-210ENST00000575513 CC2D1AQ6P1N0 951 aaPredicted RBP14.33□□□□□ -0.12
CIITA-210ENST00000575513 LCLAT1Q6UWP7 414 aa14.33□□□□□ -0.12
CIITA-210ENST00000575513 CCDC186Q7Z3E2 898 aa14.33□□□□□ -0.12
CIITA-210ENST00000575513 DDX42Q86XP3 938 aaKnown RBP eCLIP14.33□□□□□ -0.12
CIITA-210ENST00000575513 GPIHBP1Q8IV16 184 aa14.33□□□□□ -0.12
CIITA-210ENST00000575513 ARHGEF19Q8IW93 802 aa14.33□□□□□ -0.12
CIITA-210ENST00000575513 KREMEN1Q96MU8 473 aa14.33□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms