RNA–Protein interactions for RNA: ENST00000575431.1

CCDC40-214, Transcript of coiled-coil domain containing 40, humanhuman

TSL 3

Gene CCDC40, Length 551 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-214ENST00000575431 HHLA1C9JL84 531 aa10.09□□□□□ -0.79
CCDC40-214ENST00000575431 F8VZ95 297 aa10.09□□□□□ -0.79
CCDC40-214ENST00000575431 CYP26A1O43174 497 aa10.09□□□□□ -0.79
CCDC40-214ENST00000575431 THAP12O43422 761 aa10.09□□□□□ -0.79
CCDC40-214ENST00000575431 CBFA2T2O43439 604 aa10.09□□□□□ -0.79
CCDC40-214ENST00000575431 ECI2O75521 394 aa10.09□□□□□ -0.79
CCDC40-214ENST00000575431 BEST1O76090 585 aa10.09□□□□□ -0.79
CCDC40-214ENST00000575431 ALADP13716 330 aa10.09□□□□□ -0.79
CCDC40-214ENST00000575431 CEBPBP17676 345 aa10.09□□□□□ -0.79
CCDC40-214ENST00000575431 BRD2P25440 801 aaKnown RBP10.09□□□□□ -0.79
CCDC40-214ENST00000575431 AVPR1AP37288 418 aa10.09□□□□□ -0.79
CCDC40-214ENST00000575431 KIF11P52732 1056 aa10.09□□□□□ -0.79
CCDC40-214ENST00000575431 SNX16P57768 344 aa10.09□□□□□ -0.79
CCDC40-214ENST00000575431 APBA1Q02410 837 aa10.09□□□□□ -0.79
CCDC40-214ENST00000575431 PDE4CQ08493 712 aa10.09□□□□□ -0.79
CCDC40-214ENST00000575431 TAF10Q12962 218 aa10.09□□□□□ -0.79
CCDC40-214ENST00000575431 TDGQ13569 410 aa10.09□□□□□ -0.79
CCDC40-214ENST00000575431 PKDCCQ504Y2 493 aa10.09□□□□□ -0.79
CCDC40-214ENST00000575431 FIGNQ5HY92 759 aa10.09□□□□□ -0.79
CCDC40-214ENST00000575431 RAB41Q5JT25 222 aa10.09□□□□□ -0.79
CCDC40-214ENST00000575431 SNX30Q5VWJ9 437 aa10.09□□□□□ -0.79
CCDC40-214ENST00000575431 CCDC186Q7Z3E2 898 aa10.09□□□□□ -0.79
CCDC40-214ENST00000575431 TMEM150AQ86TG1 271 aa10.09□□□□□ -0.79
CCDC40-214ENST00000575431 PIGZQ86VD9 579 aa10.09□□□□□ -0.79
CCDC40-214ENST00000575431 TTC30AQ86WT1 665 aa10.09□□□□□ -0.79
CCDC40-214ENST00000575431 ZNF677Q86XU0 584 aa10.09□□□□□ -0.79
CCDC40-214ENST00000575431 ARHGAP18Q8N392 663 aa10.09□□□□□ -0.79
CCDC40-214ENST00000575431 ZNF276Q8N554 614 aa10.09□□□□□ -0.79
CCDC40-214ENST00000575431 ZSCAN18Q8TBC5 510 aaPredicted RBP10.09□□□□□ -0.79
CCDC40-214ENST00000575431 STK32AQ8WU08 396 aa10.09□□□□□ -0.79
CCDC40-214ENST00000575431 SLC35F5Q8WV83 523 aa10.09□□□□□ -0.79
CCDC40-214ENST00000575431 ING5Q8WYH8 240 aa10.09□□□□□ -0.79
CCDC40-214ENST00000575431 TFAP2BQ92481 460 aa10.09□□□□□ -0.79
CCDC40-214ENST00000575431 SMARCD2Q92925 531 aa10.09□□□□□ -0.79
CCDC40-214ENST00000575431 FBXO32Q969P5 355 aa10.09□□□□□ -0.79
CCDC40-214ENST00000575431 ELSPBP1Q96BH3 223 aa10.09□□□□□ -0.79
CCDC40-214ENST00000575431 TCEAL4Q96EI5 215 aa10.09□□□□□ -0.79
CCDC40-214ENST00000575431 HSFY1Q96LI6 401 aa10.09□□□□□ -0.79
CCDC40-214ENST00000575431 NAP1L5Q96NT1 182 aaPredicted RBP10.09□□□□□ -0.79
CCDC40-214ENST00000575431 SLITRK6Q9H5Y7 841 aa10.09□□□□□ -0.79
CCDC40-214ENST00000575431 KIF9Q9HAQ2 790 aa10.09□□□□□ -0.79
CCDC40-214ENST00000575431 KCNK12Q9HB15 430 aa10.09□□□□□ -0.79
CCDC40-214ENST00000575431 CYLDQ9NQC7 956 aa10.09□□□□□ -0.79
CCDC40-214ENST00000575431 TLR8Q9NR97 1041 aaKnown RBP10.09□□□□□ -0.79
CCDC40-214ENST00000575431 TMEM30AQ9NV96 361 aa10.09□□□□□ -0.79
CCDC40-214ENST00000575431 LIMD1Q9UGP4 676 aa10.09□□□□□ -0.79
CCDC40-214ENST00000575431 PCDHGC3Q9UN70 934 aa10.09□□□□□ -0.79
CCDC40-214ENST00000575431 SORCS3Q9UPU3 1222 aa10.09□□□□□ -0.79
CCDC40-214ENST00000575431 SCML2Q9UQR0 700 aa10.09□□□□□ -0.79
CCDC40-214ENST00000575431 CEP83Q9Y592 693 aa10.09□□□□□ -0.79
CCDC40-214ENST00000575431 USP3Q9Y6I4 520 aa10.09□□□□□ -0.79
CCDC40-214ENST00000575431 PATJQ8NI35 1801 aa10.09□□□□□ -0.79
CCDC40-214ENST00000575431 DENND4CQ5VZ89 1909 aa10.08□□□□□ -0.8
CCDC40-214ENST00000575431 TRAV19A0A0A6YYK7 116 aa10.08□□□□□ -0.8
CCDC40-214ENST00000575431 M0QYV0 167 aa10.08□□□□□ -0.8
CCDC40-214ENST00000575431 TNFRSF10AO00220 468 aa10.08□□□□□ -0.8
CCDC40-214ENST00000575431 TEX33O43247 280 aa10.08□□□□□ -0.8
CCDC40-214ENST00000575431 USP17L7P0C7H9 530 aa10.08□□□□□ -0.8
CCDC40-214ENST00000575431 ZDHHC11BP0C7U3 371 aa10.08□□□□□ -0.8
CCDC40-214ENST00000575431 GJA1P17302 382 aa10.08□□□□□ -0.8
CCDC40-214ENST00000575431 HDCP19113 662 aa10.08□□□□□ -0.8
CCDC40-214ENST00000575431 SP100P23497 879 aaPredicted RBP10.08□□□□□ -0.8
CCDC40-214ENST00000575431 CLCN1P35523 988 aa10.08□□□□□ -0.8
CCDC40-214ENST00000575431 KRT9P35527 623 aa10.08□□□□□ -0.8
CCDC40-214ENST00000575431 SOX5P35711 763 aa10.08□□□□□ -0.8
CCDC40-214ENST00000575431 GPD2P43304 727 aa10.08□□□□□ -0.8
CCDC40-214ENST00000575431 ACADSBP45954 432 aa10.08□□□□□ -0.8
CCDC40-214ENST00000575431 TUBP50607 506 aa10.08□□□□□ -0.8
CCDC40-214ENST00000575431 JAM2P57087 298 aa10.08□□□□□ -0.8
CCDC40-214ENST00000575431 USP46P62068 366 aa10.08□□□□□ -0.8
CCDC40-214ENST00000575431 IFRD2Q12894 506 aaPredicted RBP10.08□□□□□ -0.8
CCDC40-214ENST00000575431 HTR4Q13639 388 aa10.08□□□□□ -0.8
CCDC40-214ENST00000575431 ZNF268Q14587 947 aaPredicted RBP10.08□□□□□ -0.8
CCDC40-214ENST00000575431 PTPN21Q16825 1174 aa10.08□□□□□ -0.8
CCDC40-214ENST00000575431 FAM78AQ5JUQ0 283 aa10.08□□□□□ -0.8
CCDC40-214ENST00000575431 TADA2BQ86TJ2 420 aa10.08□□□□□ -0.8
CCDC40-214ENST00000575431 UBALD2Q8IYN6 164 aa10.08□□□□□ -0.8
CCDC40-214ENST00000575431 CMTM8Q8IZV2 173 aa10.08□□□□□ -0.8
CCDC40-214ENST00000575431 SCML4Q8N228 414 aa10.08□□□□□ -0.8
CCDC40-214ENST00000575431 CELF5Q8N6W0 485 aaKnown RBP10.08□□□□□ -0.8
CCDC40-214ENST00000575431 KIAA1958Q8N8K9 716 aa10.08□□□□□ -0.8
CCDC40-214ENST00000575431 SCAMP5Q8TAC9 235 aa10.08□□□□□ -0.8
CCDC40-214ENST00000575431 UBA3Q8TBC4 463 aa10.08□□□□□ -0.8
CCDC40-214ENST00000575431 DEPDC1BQ8WUY9 529 aa10.08□□□□□ -0.8
CCDC40-214ENST00000575431 ASB16Q96NS5 453 aa10.08□□□□□ -0.8
CCDC40-214ENST00000575431 NECAB3Q96P71 396 aaPredicted RBP10.08□□□□□ -0.8
CCDC40-214ENST00000575431 NOX5Q96PH1 765 aa10.08□□□□□ -0.8
CCDC40-214ENST00000575431 CDK5RAP1Q96SZ6 601 aaKnown RBP10.08□□□□□ -0.8
CCDC40-214ENST00000575431 COL25A1Q9BXS0 654 aaPredicted RBP10.08□□□□□ -0.8
CCDC40-214ENST00000575431 SLC46A2Q9BY10 475 aa10.08□□□□□ -0.8
CCDC40-214ENST00000575431 NUCKS1Q9H1E3 243 aaKnown RBP10.08□□□□□ -0.8
CCDC40-214ENST00000575431 LHX5Q9H2C1 402 aa10.08□□□□□ -0.8
CCDC40-214ENST00000575431 PDCL3Q9H2J4 239 aa10.08□□□□□ -0.8
CCDC40-214ENST00000575431 NLRC4Q9NPP4 1024 aa10.08□□□□□ -0.8
CCDC40-214ENST00000575431 CNGB3Q9NQW8 809 aa10.08□□□□□ -0.8
CCDC40-214ENST00000575431 CLIC5Q9NZA1 410 aa10.08□□□□□ -0.8
CCDC40-214ENST00000575431 DPYSL4O14531 572 aa10.07□□□□□ -0.8
CCDC40-214ENST00000575431 SART1O43290 800 aaKnown RBP10.07□□□□□ -0.8
CCDC40-214ENST00000575431 FBXO21O94952 628 aa10.07□□□□□ -0.8
CCDC40-214ENST00000575431 OLFM2O95897 454 aa10.07□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 46.5 ms