RNA–Protein interactions for RNA: ENST00000575207.5

VPS53-218, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 575 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-218ENST00000575207 H0Y8X5 98 aa17.51■□□□□ 0.39
VPS53-218ENST00000575207 SGSM2O43147 1006 aa17.51■□□□□ 0.39
VPS53-218ENST00000575207 LDOC1O95751 146 aaPredicted RBP17.51■□□□□ 0.39
VPS53-218ENST00000575207 NFICP08651 508 aa17.51■□□□□ 0.39
VPS53-218ENST00000575207 XRCC6P12956 609 aaKnown RBP eCLIP17.51■□□□□ 0.398e-6■■□□□ 13.6
VPS53-218ENST00000575207 ATP2B1P20020 1258 aa17.51■□□□□ 0.39
VPS53-218ENST00000575207 WASP42768 502 aa17.51■□□□□ 0.39
VPS53-218ENST00000575207 CDR1P51861 262 aa17.51■□□□□ 0.39
VPS53-218ENST00000575207 ERVPABLB-1P60509 514 aa17.51■□□□□ 0.39
VPS53-218ENST00000575207 HIST2H2BCQ6DN03 193 aa17.51■□□□□ 0.39
VPS53-218ENST00000575207 FILIP1Q7Z7B0 1213 aa17.51■□□□□ 0.39
VPS53-218ENST00000575207 CHD1LQ86WJ1 897 aa17.51■□□□□ 0.39
VPS53-218ENST00000575207 LSMEM2Q8N112 164 aa17.51■□□□□ 0.39
VPS53-218ENST00000575207 TMEM130Q8N3G9 435 aa17.51■□□□□ 0.39
VPS53-218ENST00000575207 FAM26EQ8N5C1 309 aa17.51■□□□□ 0.39
VPS53-218ENST00000575207 CNDP2Q96KP4 475 aaKnown RBP17.51■□□□□ 0.39
VPS53-218ENST00000575207 GABRG3Q99928 467 aa17.51■□□□□ 0.39
VPS53-218ENST00000575207 EIF2AK1Q9BQI3 630 aaKnown RBP17.51■□□□□ 0.39
VPS53-218ENST00000575207 SLC6A17Q9H1V8 727 aa17.51■□□□□ 0.39
VPS53-218ENST00000575207 USP36Q9P275 1121 aaKnown RBP17.51■□□□□ 0.39
VPS53-218ENST00000575207 ANKRD6Q9Y2G4 727 aa17.51■□□□□ 0.39
VPS53-218ENST00000575207 CCDC196A0A1B0GTZ2 297 aa17.5■□□□□ 0.39
VPS53-218ENST00000575207 BLACEA4D250 179 aa17.5■□□□□ 0.39
VPS53-218ENST00000575207 CBX4O00257 560 aa17.5■□□□□ 0.39
VPS53-218ENST00000575207 KCNK3O14649 394 aa17.5■□□□□ 0.39
VPS53-218ENST00000575207 ILKQ13418 452 aa17.5■□□□□ 0.39
VPS53-218ENST00000575207 LINC00303Q3SY05 128 aa17.5■□□□□ 0.39
VPS53-218ENST00000575207 LRRTM3Q86VH5 581 aa17.5■□□□□ 0.39
VPS53-218ENST00000575207 PIGOQ8TEQ8 1089 aa17.5■□□□□ 0.39
VPS53-218ENST00000575207 OSGEPQ9NPF4 335 aa17.5■□□□□ 0.39
VPS53-218ENST00000575207 SH3GLB2Q9NR46 395 aa17.5■□□□□ 0.39
VPS53-218ENST00000575207 C2orf78A6NCI8 922 aa17.49■□□□□ 0.39
VPS53-218ENST00000575207 NOL4O94818 638 aa17.49■□□□□ 0.39
VPS53-218ENST00000575207 ADH1CP00326 375 aa17.49■□□□□ 0.39
VPS53-218ENST00000575207 HDCP19113 662 aa17.49■□□□□ 0.39
VPS53-218ENST00000575207 CHMLP26374 656 aa17.49■□□□□ 0.39
VPS53-218ENST00000575207 NLRP5P59047 1200 aa17.49■□□□□ 0.39
VPS53-218ENST00000575207 ATP2C1P98194 919 aaPredicted RBP17.49■□□□□ 0.39
VPS53-218ENST00000575207 SLC10A6Q3KNW5 377 aa17.49■□□□□ 0.39
VPS53-218ENST00000575207 ZNF568Q3ZCX4 644 aa17.49■□□□□ 0.39
VPS53-218ENST00000575207 ETFBKMTQ8IXQ9 262 aa17.49■□□□□ 0.39
VPS53-218ENST00000575207 STKLD1Q8NE28 680 aa17.49■□□□□ 0.39
VPS53-218ENST00000575207 ACO2Q99798 780 aaKnown RBP17.49■□□□□ 0.39
VPS53-218ENST00000575207 ITM2CQ9NQX7 267 aa17.49■□□□□ 0.39
VPS53-218ENST00000575207 PCDHA4Q9UN74 947 aa17.49■□□□□ 0.39
VPS53-218ENST00000575207 SLCO1B1Q9Y6L6 691 aa17.49■□□□□ 0.39
VPS53-218ENST00000575207 CSMD1Q96PZ7 3565 aa17.49■□□□□ 0.39
VPS53-218ENST00000575207 KLF18A0A0U1RQI7 1052 aa17.48■□□□□ 0.39
VPS53-218ENST00000575207 LEFTY2O00292 366 aa17.48■□□□□ 0.39
VPS53-218ENST00000575207 SLC9A3R1O14745 358 aaPredicted RBP17.48■□□□□ 0.39
VPS53-218ENST00000575207 DFNA5O60443 496 aa17.48■□□□□ 0.39
VPS53-218ENST00000575207 CYP11A1P05108 521 aa17.48■□□□□ 0.39
VPS53-218ENST00000575207 MCF2P10911 925 aa17.48■□□□□ 0.39
VPS53-218ENST00000575207 ADH5P11766 374 aa17.48■□□□□ 0.39
VPS53-218ENST00000575207 ODC1P11926 461 aa17.48■□□□□ 0.39
VPS53-218ENST00000575207 GRIA4P48058 902 aa17.48■□□□□ 0.39
VPS53-218ENST00000575207 EXOSC10Q01780 885 aaKnown RBP17.48■□□□□ 0.39
VPS53-218ENST00000575207 KCNB1Q14721 858 aa17.48■□□□□ 0.39
VPS53-218ENST00000575207 PPP2R5AQ15172 486 aa17.48■□□□□ 0.39
VPS53-218ENST00000575207 TEAD4Q15561 434 aa17.48■□□□□ 0.39
VPS53-218ENST00000575207 KRTAP21-3Q3LHN1 58 aa17.48■□□□□ 0.39
VPS53-218ENST00000575207 SDE2Q6IQ49 451 aa17.48■□□□□ 0.39
VPS53-218ENST00000575207 KIAA1324Q6UXG2 1013 aaKnown RBP17.48■□□□□ 0.39
VPS53-218ENST00000575207 SENP8Q96LD8 212 aa17.48■□□□□ 0.39
VPS53-218ENST00000575207 ACOX2Q99424 681 aa17.48■□□□□ 0.39
VPS53-218ENST00000575207 SEMA3CQ99985 751 aa17.48■□□□□ 0.39
VPS53-218ENST00000575207 KIFC3Q9BVG8 833 aa17.48■□□□□ 0.39
VPS53-218ENST00000575207 LRRC4CQ9HCJ2 640 aa17.48■□□□□ 0.39
VPS53-218ENST00000575207 ABI2Q9NYB9 513 aaPredicted RBP17.48■□□□□ 0.39
VPS53-218ENST00000575207 GTF3C5Q9Y5Q8 519 aaPredicted RBP17.48■□□□□ 0.39
VPS53-218ENST00000575207 ANAPC1Q9H1A4 1944 aa17.47■□□□□ 0.39
VPS53-218ENST00000575207 ABLIM1O14639 778 aa17.47■□□□□ 0.39
VPS53-218ENST00000575207 SLC27A2O14975 620 aa17.47■□□□□ 0.39
VPS53-218ENST00000575207 CYP3A5P20815 502 aa17.47■□□□□ 0.39
VPS53-218ENST00000575207 GPR15P49685 360 aa17.47■□□□□ 0.39
VPS53-218ENST00000575207 ZBTB6Q15916 424 aa17.47■□□□□ 0.39
VPS53-218ENST00000575207 INF2Q27J81 1249 aa17.47■□□□□ 0.39
VPS53-218ENST00000575207 C10orf76Q5T2E6 689 aa17.47■□□□□ 0.39
VPS53-218ENST00000575207 EGFLAMQ63HQ2 1017 aa17.47■□□□□ 0.39
VPS53-218ENST00000575207 NUDT18Q6ZVK8 323 aa17.47■□□□□ 0.39
VPS53-218ENST00000575207 CHPFQ8IZ52 775 aa17.47■□□□□ 0.39
VPS53-218ENST00000575207 TERB1Q8NA31 727 aa17.47■□□□□ 0.39
VPS53-218ENST00000575207 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP17.47■□□□□ 0.39
VPS53-218ENST00000575207 CELSR2Q9HCU4 2923 aa17.47■□□□□ 0.39
VPS53-218ENST00000575207 A0A087WWV3 80 aa17.46■□□□□ 0.39
VPS53-218ENST00000575207 A0A1B0GTQ1 180 aa17.46■□□□□ 0.39
VPS53-218ENST00000575207 KCNJ18B7U540 433 aa17.46■□□□□ 0.39
VPS53-218ENST00000575207 GCFC2P16383 781 aaKnown RBP17.46■□□□□ 0.39
VPS53-218ENST00000575207 PFKLP17858 780 aa17.46■□□□□ 0.39
VPS53-218ENST00000575207 PROZP22891 400 aa17.46■□□□□ 0.39
VPS53-218ENST00000575207 CTSKP43235 329 aa17.46■□□□□ 0.39
VPS53-218ENST00000575207 PDE6CP51160 858 aa17.46■□□□□ 0.39
VPS53-218ENST00000575207 LILRA4P59901 499 aa17.46■□□□□ 0.39
VPS53-218ENST00000575207 INSM1Q01101 510 aaPredicted RBP17.46■□□□□ 0.39
VPS53-218ENST00000575207 IL9RQ01113 521 aa17.46■□□□□ 0.39
VPS53-218ENST00000575207 AKAP17AQ02040 695 aaKnown RBP17.46■□□□□ 0.39
VPS53-218ENST00000575207 SMC5Q8IY18 1101 aa17.46■□□□□ 0.39
VPS53-218ENST00000575207 RNF26Q9BY78 433 aaPredicted RBP17.46■□□□□ 0.39
VPS53-218ENST00000575207 PCED1AQ9H1Q7 454 aa17.46■□□□□ 0.39
VPS53-218ENST00000575207 NAP1L2Q9ULW6 460 aaPredicted RBP17.46■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 39.8 ms