RNA–Protein interactions for RNA: ENST00000572607.1

VPS53-214, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 732 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-214ENST00000572607 ARID3BQ8IVW6 561 aaPredicted RBP8.62□□□□□ -1.03
VPS53-214ENST00000572607 MFSD6LQ8IWD5 586 aa8.62□□□□□ -1.03
VPS53-214ENST00000572607 CELF5Q8N6W0 485 aaKnown RBP8.62□□□□□ -1.03
VPS53-214ENST00000572607 B3GALNT2Q8NCR0 500 aa8.62□□□□□ -1.03
VPS53-214ENST00000572607 ERCC4Q92889 916 aaPredicted RBP8.62□□□□□ -1.03
VPS53-214ENST00000572607 TRMT2BQ96GJ1 504 aaKnown RBP8.62□□□□□ -1.03
VPS53-214ENST00000572607 PCED1BQ96HM7 432 aa8.62□□□□□ -1.03
VPS53-214ENST00000572607 DHTKD1Q96HY7 919 aaPredicted RBP8.62□□□□□ -1.03
VPS53-214ENST00000572607 SPATA17Q96L03 361 aa8.62□□□□□ -1.03
VPS53-214ENST00000572607 KIF9Q9HAQ2 790 aa8.62□□□□□ -1.03
VPS53-214ENST00000572607 TRPC7Q9HCX4 862 aa8.62□□□□□ -1.03
VPS53-214ENST00000572607 OBP2AQ9NY56 170 aa8.62□□□□□ -1.03
VPS53-214ENST00000572607 SIT1Q9Y3P8 196 aa8.62□□□□□ -1.03
VPS53-214ENST00000572607 NCOR2Q9Y618 2525 aa8.62□□□□□ -1.03
VPS53-214ENST00000572607 CACNA1BQ00975 2339 aa8.62□□□□□ -1.03
VPS53-214ENST00000572607 SCN1AP35498 2009 aa8.61□□□□□ -1.03
VPS53-214ENST00000572607 TRAV19A0A0A6YYK7 116 aa8.61□□□□□ -1.03
VPS53-214ENST00000572607 KANSL1LA0AUZ9 987 aa8.61□□□□□ -1.03
VPS53-214ENST00000572607 MED19A0JLT2 244 aaPredicted RBP8.61□□□□□ -1.03
VPS53-214ENST00000572607 BICDL2A1A5D9 508 aa8.61□□□□□ -1.03
VPS53-214ENST00000572607 CHADO15335 359 aa8.61□□□□□ -1.03
VPS53-214ENST00000572607 PI15O43692 258 aa8.61□□□□□ -1.03
VPS53-214ENST00000572607 GADD45BO75293 160 aaPredicted RBP8.61□□□□□ -1.03
VPS53-214ENST00000572607 F11P03951 625 aa8.61□□□□□ -1.03
VPS53-214ENST00000572607 CD46P15529 392 aa8.61□□□□□ -1.03
VPS53-214ENST00000572607 HMGA1P17096 107 aaKnown RBP8.61□□□□□ -1.03
VPS53-214ENST00000572607 CCNE1P24864 410 aa8.61□□□□□ -1.03
VPS53-214ENST00000572607 WEE1P30291 646 aa8.61□□□□□ -1.03
VPS53-214ENST00000572607 MAGEA9P43362 315 aa8.61□□□□□ -1.03
VPS53-214ENST00000572607 MMP16P51512 607 aa8.61□□□□□ -1.03
VPS53-214ENST00000572607 CDH8P55286 799 aa8.61□□□□□ -1.03
VPS53-214ENST00000572607 NOP14P78316 857 aaKnown RBP8.61□□□□□ -1.03
VPS53-214ENST00000572607 CCDC142Q17RM4 750 aa8.61□□□□□ -1.03
VPS53-214ENST00000572607 CCDC40Q4G0X9 1142 aa8.61□□□□□ -1.03
VPS53-214ENST00000572607 ISM2Q6H9L7 571 aa8.61□□□□□ -1.03
VPS53-214ENST00000572607 KLHL10Q6JEL2 608 aa8.61□□□□□ -1.03
VPS53-214ENST00000572607 CC2D1AQ6P1N0 951 aaPredicted RBP8.61□□□□□ -1.03
VPS53-214ENST00000572607 C1orf228Q6PIY5 440 aa8.61□□□□□ -1.03
VPS53-214ENST00000572607 ERMP1Q7Z2K6 904 aa8.61□□□□□ -1.03
VPS53-214ENST00000572607 UNC93AQ86WB7 457 aa8.61□□□□□ -1.03
VPS53-214ENST00000572607 CCDC105Q8IYK2 499 aa8.61□□□□□ -1.03
VPS53-214ENST00000572607 CMTM8Q8IZV2 173 aa8.61□□□□□ -1.03
VPS53-214ENST00000572607 ADSSL1Q8N142 457 aa8.61□□□□□ -1.03
VPS53-214ENST00000572607 TTC39CQ8N584 583 aa8.61□□□□□ -1.03
VPS53-214ENST00000572607 DTWD2Q8NBA8 298 aa8.61□□□□□ -1.03
VPS53-214ENST00000572607 PJA1Q8NG27 643 aa8.61□□□□□ -1.03
VPS53-214ENST00000572607 SPATA20Q8TB22 786 aa8.61□□□□□ -1.03
VPS53-214ENST00000572607 BPIFB1Q8TDL5 484 aa8.61□□□□□ -1.03
VPS53-214ENST00000572607 TAS1R2Q8TE23 839 aa8.61□□□□□ -1.03
VPS53-214ENST00000572607 MSANTD3Q96H12 275 aa8.61□□□□□ -1.03
VPS53-214ENST00000572607 C8orf48Q96LL4 319 aa8.61□□□□□ -1.03
VPS53-214ENST00000572607 MYRFLQ96LU7 910 aa8.61□□□□□ -1.03
VPS53-214ENST00000572607 NELL2Q99435 816 aa8.61□□□□□ -1.03
VPS53-214ENST00000572607 BCO2Q9BYV7 579 aa8.61□□□□□ -1.03
VPS53-214ENST00000572607 NIF3L1Q9GZT8 377 aa8.61□□□□□ -1.03
VPS53-214ENST00000572607 DPEP3Q9H4B8 488 aa8.61□□□□□ -1.03
VPS53-214ENST00000572607 CYP3A43Q9HB55 503 aa8.61□□□□□ -1.03
VPS53-214ENST00000572607 METTL14Q9HCE5 456 aaKnown RBP8.61□□□□□ -1.03
VPS53-214ENST00000572607 TRPV5Q9NQA5 729 aa8.61□□□□□ -1.03
VPS53-214ENST00000572607 HEBP1Q9NRV9 189 aa8.61□□□□□ -1.03
VPS53-214ENST00000572607 TRPM5Q9NZQ8 1165 aa8.61□□□□□ -1.03
VPS53-214ENST00000572607 ARMCX3Q9UH62 379 aaPredicted RBP8.61□□□□□ -1.03
VPS53-214ENST00000572607 MAN1B1Q9UKM7 699 aa8.61□□□□□ -1.03
VPS53-214ENST00000572607 DOCK6Q96HP0 2047 aa8.61□□□□□ -1.03
VPS53-214ENST00000572607 TCHHQ07283 1943 aa8.6□□□□□ -1.03
VPS53-214ENST00000572607 TTC24A2A3L6 582 aaPredicted RBP8.6□□□□□ -1.03
VPS53-214ENST00000572607 FAM170BA6NMN3 283 aa8.6□□□□□ -1.03
VPS53-214ENST00000572607 F8VP50 259 aa8.6□□□□□ -1.03
VPS53-214ENST00000572607 BIN1O00499 593 aa8.6□□□□□ -1.03
VPS53-214ENST00000572607 RTN3O95197 1032 aaPredicted RBP8.6□□□□□ -1.03
VPS53-214ENST00000572607 PRAMEF12O95522 483 aa8.6□□□□□ -1.03
VPS53-214ENST00000572607 FGFR1OPO95684 399 aaKnown RBP8.6□□□□□ -1.03
VPS53-214ENST00000572607 CKMP06732 381 aa8.6□□□□□ -1.03
VPS53-214ENST00000572607 USP17L7P0C7H9 530 aa8.6□□□□□ -1.03
VPS53-214ENST00000572607 GLULP15104 373 aa8.6□□□□□ -1.03
VPS53-214ENST00000572607 PPP3CCP48454 512 aa8.6□□□□□ -1.03
VPS53-214ENST00000572607 KPNA1P52294 538 aaPredicted RBP8.6□□□□□ -1.03
VPS53-214ENST00000572607 NDST1P52848 882 aa8.6□□□□□ -1.03
VPS53-214ENST00000572607 PPP3CAQ08209 521 aa8.6□□□□□ -1.03
VPS53-214ENST00000572607 FCHO2Q0JRZ9 810 aa8.6□□□□□ -1.03
VPS53-214ENST00000572607 CETN1Q12798 172 aa8.6□□□□□ -1.03
VPS53-214ENST00000572607 IFRD2Q12894 506 aaPredicted RBP8.6□□□□□ -1.03
VPS53-214ENST00000572607 C1orf220Q5T0J3 134 aa8.6□□□□□ -1.03
VPS53-214ENST00000572607 TXNDC8Q6A555 127 aa8.6□□□□□ -1.03
VPS53-214ENST00000572607 ANKRD40Q6AI12 368 aa8.6□□□□□ -1.03
VPS53-214ENST00000572607 SPOPLQ6IQ16 392 aa8.6□□□□□ -1.03
VPS53-214ENST00000572607 ACOT1Q86TX2 421 aa8.6□□□□□ -1.03
VPS53-214ENST00000572607 FAM35AQ86V20 835 aa8.6□□□□□ -1.03
VPS53-214ENST00000572607 MON1AQ86VX9 555 aa8.6□□□□□ -1.03
VPS53-214ENST00000572607 MAB21L3Q8N8X9 362 aa8.6□□□□□ -1.03
VPS53-214ENST00000572607 TRIML1Q8N9V2 468 aa8.6□□□□□ -1.03
VPS53-214ENST00000572607 STKLD1Q8NE28 680 aa8.6□□□□□ -1.03
VPS53-214ENST00000572607 FBXL13Q8NEE6 735 aa8.6□□□□□ -1.03
VPS53-214ENST00000572607 PDZD8Q8NEN9 1154 aa8.6□□□□□ -1.03
VPS53-214ENST00000572607 NELFBQ8WX92 580 aa8.6□□□□□ -1.03
VPS53-214ENST00000572607 EXOC4Q96A65 974 aa8.6□□□□□ -1.03
VPS53-214ENST00000572607 EEF2KMTQ96G04 330 aa8.6□□□□□ -1.03
VPS53-214ENST00000572607 SMARCD1Q96GM5 515 aa8.6□□□□□ -1.03
VPS53-214ENST00000572607 CEP63Q96MT8 703 aa8.6□□□□□ -1.03
VPS53-214ENST00000572607 SLITRK1Q96PX8 696 aa8.6□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms