RNA–Protein interactions for RNA: ENST00000571805.5

VPS53-211, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,356 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-211ENST00000571805 GPC2Q8N158 579 aa23.82■■□□□ 1.4
VPS53-211ENST00000571805 UBA3Q8TBC4 463 aa23.82■■□□□ 1.4
VPS53-211ENST00000571805 L3MBTL3Q96JM7 780 aaPredicted RBP23.82■■□□□ 1.4
VPS53-211ENST00000571805 RAB6CQ9H0N0 254 aa23.82■■□□□ 1.4
VPS53-211ENST00000571805 EBF2Q9HAK2 575 aa23.82■■□□□ 1.4
VPS53-211ENST00000571805 ETNK1Q9HBU6 452 aa23.82■■□□□ 1.4
VPS53-211ENST00000571805 TXLNGQ9NUQ3 528 aa23.82■■□□□ 1.4
VPS53-211ENST00000571805 STK38LQ9Y2H1 464 aa23.82■■□□□ 1.4
VPS53-211ENST00000571805 L3MBTL1Q9Y468 752 aa23.82■■□□□ 1.4
VPS53-211ENST00000571805 MCF2P10911 925 aa23.81■■□□□ 1.4
VPS53-211ENST00000571805 IBSPP21815 317 aaPredicted RBP23.81■■□□□ 1.4
VPS53-211ENST00000571805 ADRA1DP25100 572 aa23.81■■□□□ 1.4
VPS53-211ENST00000571805 NOMO1Q15155 1222 aa23.81■■□□□ 1.4
VPS53-211ENST00000571805 BANPQ8N9N5 519 aa23.81■■□□□ 1.4
VPS53-211ENST00000571805 HEXIM2Q96MH2 286 aaKnown RBP23.81■■□□□ 1.4
VPS53-211ENST00000571805 LRRC37BQ96QE4 947 aa23.81■■□□□ 1.4
VPS53-211ENST00000571805 RBPJLQ9UBG7 517 aa23.81■■□□□ 1.4
VPS53-211ENST00000571805 CYP3A5P20815 502 aa23.81■■□□□ 1.4
VPS53-211ENST00000571805 BASP1P80723 227 aaKnown RBP23.81■■□□□ 1.4
VPS53-211ENST00000571805 RNASELQ05823 741 aaKnown RBP23.81■■□□□ 1.4
VPS53-211ENST00000571805 SLC10A6Q3KNW5 377 aa23.81■■□□□ 1.4
VPS53-211ENST00000571805 UTP4Q969X6 686 aaKnown RBP23.81■■□□□ 1.4
VPS53-211ENST00000571805 STAMBPL1Q96FJ0 436 aa23.81■■□□□ 1.4
VPS53-211ENST00000571805 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP23.8■■□□□ 1.4
VPS53-211ENST00000571805 C2CD4BA6NLJ0 364 aa23.8■■□□□ 1.4
VPS53-211ENST00000571805 TXNP10599 105 aaKnown RBP23.8■■□□□ 1.4
VPS53-211ENST00000571805 STIP1P31948 543 aaKnown RBP23.8■■□□□ 1.4
VPS53-211ENST00000571805 ACCSLQ4AC99 568 aa23.8■■□□□ 1.4
VPS53-211ENST00000571805 TCP10LQ8TDR4 215 aa23.8■■□□□ 1.4
VPS53-211ENST00000571805 CNPY3Q9BT09 278 aa23.8■■□□□ 1.4
VPS53-211ENST00000571805 PDZD7Q9H5P4 517 aa23.8■■□□□ 1.4
VPS53-211ENST00000571805 ASB7Q9H672 318 aa23.8■■□□□ 1.4
VPS53-211ENST00000571805 PDGFCQ9NRA1 345 aa23.8■■□□□ 1.4
VPS53-211ENST00000571805 DCTN3O75935 186 aa23.8■■□□□ 1.4
VPS53-211ENST00000571805 ATP5HO75947 161 aa23.8■■□□□ 1.4
VPS53-211ENST00000571805 GPD1P21695 349 aa23.8■■□□□ 1.4
VPS53-211ENST00000571805 ROR1Q01973 937 aa23.8■■□□□ 1.4
VPS53-211ENST00000571805 TNFAIP2Q03169 654 aa23.8■■□□□ 1.4
VPS53-211ENST00000571805 POU5F1BQ06416 359 aa23.8■■□□□ 1.4
VPS53-211ENST00000571805 VSIG1Q86XK7 387 aa23.8■■□□□ 1.4
VPS53-211ENST00000571805 HPDLQ96IR7 371 aa23.8■■□□□ 1.4
VPS53-211ENST00000571805 STAU2Q9NUL3 570 aaKnown RBP eCLIP23.8■■□□□ 1.4
VPS53-211ENST00000571805 CHMP2BQ9UQN3 213 aa23.8■■□□□ 1.4
VPS53-211ENST00000571805 ALDH3A1P30838 453 aa23.79■■□□□ 1.4
VPS53-211ENST00000571805 ELK3P41970 407 aa23.79■■□□□ 1.4
VPS53-211ENST00000571805 PHKA2P46019 1235 aa23.79■■□□□ 1.4
VPS53-211ENST00000571805 CDH6P55285 790 aa23.79■■□□□ 1.4
VPS53-211ENST00000571805 TLDC1Q6P9B6 456 aa23.79■■□□□ 1.4
VPS53-211ENST00000571805 DARS2Q6PI48 645 aaKnown RBP23.79■■□□□ 1.4
VPS53-211ENST00000571805 RXFP2Q8WXD0 754 aa23.79■■□□□ 1.4
VPS53-211ENST00000571805 OTUD5Q96G74 571 aa23.79■■□□□ 1.4
VPS53-211ENST00000571805 PIWIL1Q96J94 861 aaKnown RBP23.79■■□□□ 1.4
VPS53-211ENST00000571805 LRMDAQ9H2I8 198 aa23.79■■□□□ 1.4
VPS53-211ENST00000571805 ELP3Q9H9T3 547 aa23.79■■□□□ 1.4
VPS53-211ENST00000571805 A0A087WZ62 844 aa23.79■■□□□ 1.4
VPS53-211ENST00000571805 TM9SF1O15321 606 aa23.79■■□□□ 1.4
VPS53-211ENST00000571805 T-ENOLP0DO92 83 aa23.79■■□□□ 1.4
VPS53-211ENST00000571805 GBP2P32456 591 aaPredicted RBP23.79■■□□□ 1.4
VPS53-211ENST00000571805 INCA1Q0VD86 236 aa23.79■■□□□ 1.4
VPS53-211ENST00000571805 KCNJ11Q14654 390 aa23.79■■□□□ 1.4
VPS53-211ENST00000571805 ILDR2Q71H61 639 aa23.79■■□□□ 1.4
VPS53-211ENST00000571805 ZC3H18Q86VM9 953 aaKnown RBP23.79■■□□□ 1.4
VPS53-211ENST00000571805 ALKBH8Q96BT7 664 aaKnown RBP23.79■■□□□ 1.4
VPS53-211ENST00000571805 CPB2Q96IY4 423 aa23.79■■□□□ 1.4
VPS53-211ENST00000571805 CYTH2Q99418 400 aa23.79■■□□□ 1.4
VPS53-211ENST00000571805 FDXACB1Q9BRP7 624 aaPredicted RBP23.79■■□□□ 1.4
VPS53-211ENST00000571805 C12orf65Q9H3J6 166 aaKnown RBP23.79■■□□□ 1.4
VPS53-211ENST00000571805 BARX2Q9UMQ3 279 aaPredicted RBP23.79■■□□□ 1.4
VPS53-211ENST00000571805 ZSWIM8A7E2V4 1837 aa23.79■■□□□ 1.4
VPS53-211ENST00000571805 GOLGA8RI6L899 631 aa23.78■■□□□ 1.4
VPS53-211ENST00000571805 P4HA1P13674 534 aa23.78■■□□□ 1.4
VPS53-211ENST00000571805 CCND1P24385 295 aa23.78■■□□□ 1.4
VPS53-211ENST00000571805 IGBP1P78318 339 aa23.78■■□□□ 1.4
VPS53-211ENST00000571805 KCTD2Q14681 263 aa23.78■■□□□ 1.4
VPS53-211ENST00000571805 C15orf59Q2T9L4 293 aaPredicted RBP23.78■■□□□ 1.4
VPS53-211ENST00000571805 IFNLR1Q8IU57 520 aaPredicted RBP23.78■■□□□ 1.4
VPS53-211ENST00000571805 MMP19Q99542 508 aa23.78■■□□□ 1.4
VPS53-211ENST00000571805 KLF6Q99612 283 aaPredicted RBP23.78■■□□□ 1.4
VPS53-211ENST00000571805 USP29Q9HBJ7 922 aa23.78■■□□□ 1.4
VPS53-211ENST00000571805 ERAP1Q9NZ08 941 aa23.78■■□□□ 1.4
VPS53-211ENST00000571805 SLC17A7Q9P2U7 560 aa23.78■■□□□ 1.4
VPS53-211ENST00000571805 TEX264Q9Y6I9 313 aa23.78■■□□□ 1.4
VPS53-211ENST00000571805 PIK3R2O00459 728 aa23.78■■□□□ 1.4
VPS53-211ENST00000571805 PFKMP08237 780 aa23.78■■□□□ 1.4
VPS53-211ENST00000571805 INSRRP14616 1297 aa23.78■■□□□ 1.4
VPS53-211ENST00000571805 PDGFRAP16234 1089 aa23.78■■□□□ 1.4
VPS53-211ENST00000571805 NDST1P52848 882 aa23.78■■□□□ 1.4
VPS53-211ENST00000571805 CBLBQ13191 982 aa23.78■■□□□ 1.4
VPS53-211ENST00000571805 PARP6Q2NL67 630 aa23.78■■□□□ 1.4
VPS53-211ENST00000571805 LCLAT1Q6UWP7 414 aa23.78■■□□□ 1.4
VPS53-211ENST00000571805 FAM183BPQ6ZVS7 135 aa23.78■■□□□ 1.4
VPS53-211ENST00000571805 DPH6Q7L8W6 267 aa23.78■■□□□ 1.4
VPS53-211ENST00000571805 LINC01465Q8N7H1 131 aa23.78■■□□□ 1.4
VPS53-211ENST00000571805 E5RJQ4 531 aa23.77■■□□□ 1.4
VPS53-211ENST00000571805 ATP2A2P16615 1042 aaKnown RBP23.77■■□□□ 1.4
VPS53-211ENST00000571805 TARSP26639 723 aaKnown RBP23.77■■□□□ 1.4
VPS53-211ENST00000571805 PLEKHG4Q58EX7 1191 aa23.77■■□□□ 1.4
VPS53-211ENST00000571805 FAM47CQ5HY64 1035 aa23.77■■□□□ 1.4
VPS53-211ENST00000571805 PLCD3Q8N3E9 789 aa23.77■■□□□ 1.4
VPS53-211ENST00000571805 RNF157Q96PX1 679 aa23.77■■□□□ 1.4
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms