RNA–Protein interactions for RNA: ENST00000570510.6

VPS53-207, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 570 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-207ENST00000570510 PDIA5Q14554 519 aa11.87□□□□□ -0.51
VPS53-207ENST00000570510 C10orf76Q5T2E6 689 aa11.87□□□□□ -0.51
VPS53-207ENST00000570510 IL27RAQ6UWB1 636 aa11.87□□□□□ -0.51
VPS53-207ENST00000570510 C1orf186Q6ZWK4 172 aa11.87□□□□□ -0.51
VPS53-207ENST00000570510 MARCH9Q86YJ5 346 aa11.87□□□□□ -0.51
VPS53-207ENST00000570510 CHPFQ8IZ52 775 aa11.87□□□□□ -0.51
VPS53-207ENST00000570510 ZNF843Q8N446 348 aa11.87□□□□□ -0.51
VPS53-207ENST00000570510 NAT16Q8N8M0 369 aa11.87□□□□□ -0.51
VPS53-207ENST00000570510 KCNV2Q8TDN2 545 aa11.87□□□□□ -0.51
VPS53-207ENST00000570510 GTF3C6Q969F1 213 aa11.87□□□□□ -0.51
VPS53-207ENST00000570510 ERLEC1Q96DZ1 483 aa11.87□□□□□ -0.51
VPS53-207ENST00000570510 ZNF419Q96HQ0 510 aaPredicted RBP11.87□□□□□ -0.51
VPS53-207ENST00000570510 FCRL3Q96P31 734 aaPredicted RBP11.87□□□□□ -0.51
VPS53-207ENST00000570510 SMPD4Q9NXE4 827 aa11.87□□□□□ -0.51
VPS53-207ENST00000570510 DDX43Q9NXZ2 648 aaKnown RBP11.87□□□□□ -0.51
VPS53-207ENST00000570510 EHD2Q9NZN4 543 aa11.87□□□□□ -0.51
VPS53-207ENST00000570510 GCNT4Q9P109 453 aa11.87□□□□□ -0.51
VPS53-207ENST00000570510 TBC1D14Q9P2M4 693 aa11.87□□□□□ -0.51
VPS53-207ENST00000570510 DEC1Q9P2X7 70 aa11.87□□□□□ -0.51
VPS53-207ENST00000570510 GTF3C4Q9UKN8 822 aa11.87□□□□□ -0.51
VPS53-207ENST00000570510 FLRT2O43155 660 aa11.86□□□□□ -0.51
VPS53-207ENST00000570510 CTDNEP1O95476 244 aa11.86□□□□□ -0.51
VPS53-207ENST00000570510 PFKLP17858 780 aa11.86□□□□□ -0.51
VPS53-207ENST00000570510 GUCY2CP25092 1073 aa11.86□□□□□ -0.51
VPS53-207ENST00000570510 ANXA13P27216 316 aa11.86□□□□□ -0.51
VPS53-207ENST00000570510 ITPKBP27987 946 aa11.86□□□□□ -0.51
VPS53-207ENST00000570510 PNPLA4P41247 253 aa11.86□□□□□ -0.51
VPS53-207ENST00000570510 HMGN5P82970 282 aaKnown RBP11.86□□□□□ -0.51
VPS53-207ENST00000570510 GAD2Q05329 585 aa11.86□□□□□ -0.51
VPS53-207ENST00000570510 MAPK7Q13164 816 aa11.86□□□□□ -0.51
VPS53-207ENST00000570510 TTC38Q5R3I4 469 aa11.86□□□□□ -0.51
VPS53-207ENST00000570510 KIAA1324Q6UXG2 1013 aaKnown RBP11.86□□□□□ -0.51
VPS53-207ENST00000570510 DDX42Q86XP3 938 aaKnown RBP eCLIP11.86□□□□□ -0.51
VPS53-207ENST00000570510 LEO1Q8WVC0 666 aaPredicted RBP11.86□□□□□ -0.51
VPS53-207ENST00000570510 ACBD6Q9BR61 282 aa11.86□□□□□ -0.51
VPS53-207ENST00000570510 HAPLN2Q9GZV7 340 aa11.86□□□□□ -0.51
VPS53-207ENST00000570510 ASB7Q9H672 318 aa11.86□□□□□ -0.51
VPS53-207ENST00000570510 CFAP97Q9P2B7 532 aa11.86□□□□□ -0.51
VPS53-207ENST00000570510 R3HCC1Q9Y3T6 440 aaKnown RBP11.86□□□□□ -0.51
VPS53-207ENST00000570510 C2CD2Q9Y426 696 aa11.86□□□□□ -0.51
VPS53-207ENST00000570510 PCDHB6Q9Y5E3 794 aa11.86□□□□□ -0.51
VPS53-207ENST00000570510 CPQQ9Y646 472 aa11.86□□□□□ -0.51
VPS53-207ENST00000570510 A0A0A0MRY4 1105 aa11.85□□□□□ -0.51
VPS53-207ENST00000570510 E9PAM4 449 aa11.85□□□□□ -0.51
VPS53-207ENST00000570510 CILPO75339 1184 aa11.85□□□□□ -0.51
VPS53-207ENST00000570510 FDPSP14324 419 aaKnown RBP11.85□□□□□ -0.51
VPS53-207ENST00000570510 ACAT1P24752 427 aaKnown RBP11.85□□□□□ -0.51
VPS53-207ENST00000570510 GRIK1P39086 918 aa11.85□□□□□ -0.51
VPS53-207ENST00000570510 ACOT2P49753 483 aa11.85□□□□□ -0.51
VPS53-207ENST00000570510 GUCY1B3Q02153 619 aa11.85□□□□□ -0.51
VPS53-207ENST00000570510 SEMG2Q02383 582 aa11.85□□□□□ -0.51
VPS53-207ENST00000570510 CFHR1Q03591 330 aa11.85□□□□□ -0.51
VPS53-207ENST00000570510 MESP2Q0VG99 397 aa11.85□□□□□ -0.51
VPS53-207ENST00000570510 GAB4Q2WGN9 574 aa11.85□□□□□ -0.51
VPS53-207ENST00000570510 ANO4Q32M45 955 aa11.85□□□□□ -0.51
VPS53-207ENST00000570510 TAF1BQ53T94 588 aaPredicted RBP11.85□□□□□ -0.51
VPS53-207ENST00000570510 C6orf118Q5T5N4 469 aa11.85□□□□□ -0.51
VPS53-207ENST00000570510 RHBDF2Q6PJF5 856 aa11.85□□□□□ -0.51
VPS53-207ENST00000570510 C4orf50Q6ZRC1 276 aa11.85□□□□□ -0.51
VPS53-207ENST00000570510 C12orf40Q86WS4 652 aa11.85□□□□□ -0.51
VPS53-207ENST00000570510 ZCCHC9Q8N567 271 aaKnown RBP11.85□□□□□ -0.51
VPS53-207ENST00000570510 KIAA1958Q8N8K9 716 aa11.85□□□□□ -0.51
VPS53-207ENST00000570510 BAP1Q92560 729 aa11.85□□□□□ -0.51
VPS53-207ENST00000570510 NXPE2Q96DL1 559 aa11.85□□□□□ -0.51
VPS53-207ENST00000570510 CPSF3Q9UKF6 684 aaKnown RBP11.85□□□□□ -0.51
VPS53-207ENST00000570510 NOL7Q9UMY1 257 aaKnown RBP11.85□□□□□ -0.51
VPS53-207ENST00000570510 KIF3AQ9Y496 699 aa11.85□□□□□ -0.51
VPS53-207ENST00000570510 AK5Q9Y6K8 562 aa11.85□□□□□ -0.51
VPS53-207ENST00000570510 MYO16Q9Y6X6 1858 aa11.85□□□□□ -0.51
VPS53-207ENST00000570510 NAV2Q8IVL1 2488 aa11.84□□□□□ -0.51
VPS53-207ENST00000570510 KIAA1549LQ6ZVL6 1849 aa11.84□□□□□ -0.51
VPS53-207ENST00000570510 TNRC6BQ9UPQ9 1833 aaKnown RBP11.84□□□□□ -0.51
VPS53-207ENST00000570510 K7ENM7 598 aa11.84□□□□□ -0.51
VPS53-207ENST00000570510 PLK4O00444 970 aa11.84□□□□□ -0.51
VPS53-207ENST00000570510 ADRB2P07550 413 aa11.84□□□□□ -0.51
VPS53-207ENST00000570510 ZNF883P0CG24 379 aa11.84□□□□□ -0.51
VPS53-207ENST00000570510 MBL2P11226 248 aaPredicted RBP11.84□□□□□ -0.51
VPS53-207ENST00000570510 NDUFV2P19404 249 aa11.84□□□□□ -0.51
VPS53-207ENST00000570510 PCSK1P29120 753 aa11.84□□□□□ -0.51
VPS53-207ENST00000570510 CD6P30203 668 aa11.84□□□□□ -0.51
VPS53-207ENST00000570510 HNF1BP35680 557 aa11.84□□□□□ -0.51
VPS53-207ENST00000570510 PPP3CCP48454 512 aa11.84□□□□□ -0.51
VPS53-207ENST00000570510 ME3Q16798 604 aa11.84□□□□□ -0.51
VPS53-207ENST00000570510 HLA-BQ31612 363 aa11.84□□□□□ -0.51
VPS53-207ENST00000570510 CFAP221Q4G0U5 840 aa11.84□□□□□ -0.51
VPS53-207ENST00000570510 INTS6LQ5JSJ4 861 aaKnown RBP11.84□□□□□ -0.51
VPS53-207ENST00000570510 LY6G5CQ5SRR4 150 aa11.84□□□□□ -0.51
VPS53-207ENST00000570510 ADALQ6DHV7 355 aa11.84□□□□□ -0.51
VPS53-207ENST00000570510 DENND5BQ6ZUT9 1274 aa11.84□□□□□ -0.51
VPS53-207ENST00000570510 GPR155Q7Z3F1 870 aa11.84□□□□□ -0.51
VPS53-207ENST00000570510 TMEM86AQ8N2M4 240 aa11.84□□□□□ -0.51
VPS53-207ENST00000570510 PDCL2Q8N4E4 241 aa11.84□□□□□ -0.51
VPS53-207ENST00000570510 NECAB1Q8N987 351 aa11.84□□□□□ -0.51
VPS53-207ENST00000570510 IPO4Q8TEX9 1081 aaKnown RBP11.84□□□□□ -0.51
VPS53-207ENST00000570510 SCFD1Q8WVM8 642 aa11.84□□□□□ -0.51
VPS53-207ENST00000570510 FUBP3Q96I24 572 aaKnown RBP eCLIP11.84□□□□□ -0.51
VPS53-207ENST00000570510 CDK5RAP3Q96JB5 506 aa11.84□□□□□ -0.51
VPS53-207ENST00000570510 CCSER1Q9C0I3 900 aa11.84□□□□□ -0.51
VPS53-207ENST00000570510 PRORYQ9H606 182 aa11.84□□□□□ -0.51
VPS53-207ENST00000570510 CLMPQ9H6B4 373 aa11.84□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms