RNA–Protein interactions for RNA: ENST00000569430.6

CLN3-238, Transcript of CLN3, battenin, human

APPRIS P1 TSL 5 BASIC

Gene CLN3, Length 3,867 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLN3-238	ENST00000569430	ACBD5	Q5T8D3	534 aa	Predicted RBP	11.86	□□□□□ -0.51
CLN3-238	ENST00000569430	C10orf82	Q8WW14	230 aa		11.86	□□□□□ -0.51
CLN3-238	ENST00000569430	USP13	Q92995	863 aa	Predicted RBP	11.86	□□□□□ -0.51
CLN3-238	ENST00000569430	MRPL1	Q9BYD6	325 aa	Known RBP	11.86	□□□□□ -0.51
CLN3-238	ENST00000569430	FBXO40	Q9UH90	709 aa		11.86	□□□□□ -0.51
CLN3-238	ENST00000569430	LGALS13	Q9UHV8	139 aa		11.86	□□□□□ -0.51
CLN3-238	ENST00000569430	ARHGAP26	Q9UNA1	814 aa		11.86	□□□□□ -0.51
CLN3-238	ENST00000569430	FAM155B	O75949	473 aa		11.85	□□□□□ -0.51
CLN3-238	ENST00000569430	CIITA	P33076	1130 aa		11.85	□□□□□ -0.51
CLN3-238	ENST00000569430	CCNF	P41002	786 aa		11.85	□□□□□ -0.51
CLN3-238	ENST00000569430	CLK2	P49760	499 aa	Known RBP	11.85	□□□□□ -0.51
CLN3-238	ENST00000569430	TBL3	Q12788	808 aa	Known RBP	11.85	□□□□□ -0.51
CLN3-238	ENST00000569430	BAAT	Q14032	418 aa	Predicted RBP	11.85	□□□□□ -0.51
CLN3-238	ENST00000569430	CYP1B1	Q16678	543 aa		11.85	□□□□□ -0.51
CLN3-238	ENST00000569430	FASTKD1	Q53R41	847 aa	Known RBP	11.85	□□□□□ -0.51
CLN3-238	ENST00000569430	CIAPIN1	Q6FI81	312 aa		11.85	□□□□□ -0.51
CLN3-238	ENST00000569430	GRAMD4	Q6IC98	578 aa		11.85	□□□□□ -0.51
CLN3-238	ENST00000569430	HHIPL2	Q6UWX4	724 aa		11.85	□□□□□ -0.51
CLN3-238	ENST00000569430	SEPT12	Q8IYM1	358 aa		11.85	□□□□□ -0.51
CLN3-238	ENST00000569430	KCTD17	Q8N5Z5	321 aa		11.85	□□□□□ -0.51
CLN3-238	ENST00000569430	CXorf38	Q8TB03	319 aa		11.85	□□□□□ -0.51
CLN3-238	ENST00000569430	SLITRK1	Q96PX8	696 aa		11.85	□□□□□ -0.51
CLN3-238	ENST00000569430	MRPL46	Q9H2W6	279 aa	Known RBP	11.85	□□□□□ -0.51
CLN3-238	ENST00000569430	AAAS	Q9NRG9	546 aa		11.85	□□□□□ -0.51
CLN3-238	ENST00000569430	NOCT	Q9UK39	431 aa	Known RBP	11.85	□□□□□ -0.51
CLN3-238	ENST00000569430	LAMB4	A4D0S4	1761 aa		11.85	□□□□□ -0.51
CLN3-238	ENST00000569430	PARP4	Q9UKK3	1724 aa	Known RBP	11.85	□□□□□ -0.51
CLN3-238	ENST00000569430	APOL1	O14791	398 aa		11.85	□□□□□ -0.51
CLN3-238	ENST00000569430	EXTL3	O43909	919 aa		11.85	□□□□□ -0.51
CLN3-238	ENST00000569430	ECE2	O60344	883 aa		11.85	□□□□□ -0.51
CLN3-238	ENST00000569430	MCF2	P10911	925 aa		11.85	□□□□□ -0.51
CLN3-238	ENST00000569430	ALAD	P13716	330 aa		11.85	□□□□□ -0.51
CLN3-238	ENST00000569430	RAB27A	P51159	221 aa		11.85	□□□□□ -0.51
CLN3-238	ENST00000569430	TAP1	Q03518	808 aa		11.85	□□□□□ -0.51
CLN3-238	ENST00000569430	ACAP1	Q15027	740 aa		11.85	□□□□□ -0.51
CLN3-238	ENST00000569430	ALLC	Q8N6M5	410 aa		11.85	□□□□□ -0.51
CLN3-238	ENST00000569430	OR6Y1	Q8NGX8	325 aa		11.85	□□□□□ -0.51
CLN3-238	ENST00000569430	TMC2	Q8TDI7	906 aa		11.85	□□□□□ -0.51
CLN3-238	ENST00000569430	RNF146	Q9NTX7	359 aa		11.85	□□□□□ -0.51
CLN3-238	ENST00000569430	GALNT8	Q9NY28	637 aa		11.85	□□□□□ -0.51
CLN3-238	ENST00000569430	PAK5	Q9P286	719 aa		11.85	□□□□□ -0.51
CLN3-238	ENST00000569430	FEM1B	Q9UK73	627 aa		11.85	□□□□□ -0.51
CLN3-238	ENST00000569430	NUP98	P52948	1817 aa		11.85	□□□□□ -0.51
CLN3-238	ENST00000569430	MYH14	Q7Z406	1995 aa	Known RBP	11.85	□□□□□ -0.51
CLN3-238	ENST00000569430	CYB561D2	O14569	222 aa		11.85	□□□□□ -0.51
CLN3-238	ENST00000569430	SNHG28	P0DPA3	235 aa		11.85	□□□□□ -0.51
CLN3-238	ENST00000569430	POLD1	P28340	1107 aa		11.85	□□□□□ -0.51
CLN3-238	ENST00000569430	TUB	P50607	506 aa		11.85	□□□□□ -0.51
CLN3-238	ENST00000569430	SNX16	P57768	344 aa		11.85	□□□□□ -0.51
CLN3-238	ENST00000569430	RPS6	P62753	249 aa	Known RBP	11.85	□□□□□ -0.51
CLN3-238	ENST00000569430	GCNT1	Q02742	428 aa		11.85	□□□□□ -0.51
CLN3-238	ENST00000569430	PRPSAP1	Q14558	356 aa		11.85	□□□□□ -0.51
CLN3-238	ENST00000569430	OASL	Q15646	514 aa	Known RBP	11.85	□□□□□ -0.51
CLN3-238	ENST00000569430	ZNF568	Q3ZCX4	644 aa		11.85	□□□□□ -0.51
CLN3-238	ENST00000569430	SLC9A9	Q8IVB4	645 aa		11.85	□□□□□ -0.51
CLN3-238	ENST00000569430	PGBD4	Q96DM1	585 aa		11.85	□□□□□ -0.51
CLN3-238	ENST00000569430	TXLNGY	Q9BZA5	131 aa		11.85	□□□□□ -0.51
CLN3-238	ENST00000569430	MTMR12	Q9C0I1	747 aa		11.85	□□□□□ -0.51
CLN3-238	ENST00000569430	KLHL8	Q9P2G9	620 aa	Predicted RBP	11.85	□□□□□ -0.51
CLN3-238	ENST00000569430	DUOX1	Q9NRD9	1551 aa		11.85	□□□□□ -0.51
CLN3-238	ENST00000569430	SPATA31A5	Q5VU36	1347 aa		11.84	□□□□□ -0.51
CLN3-238	ENST00000569430	SPATA31A7	Q8IWB4	1347 aa		11.84	□□□□□ -0.51
CLN3-238	ENST00000569430	PRPF4	O43172	522 aa	Known RBP eCLIP	11.84	□□□□□ -0.51
CLN3-238	ENST00000569430	TPST1	O60507	370 aa		11.84	□□□□□ -0.51
CLN3-238	ENST00000569430	SPAG6	O75602	509 aa		11.84	□□□□□ -0.51
CLN3-238	ENST00000569430	ASNS	P08243	561 aa		11.84	□□□□□ -0.51
CLN3-238	ENST00000569430	IL1R1	P14778	569 aa		11.84	□□□□□ -0.51
CLN3-238	ENST00000569430	OCRL	Q01968	901 aa		11.84	□□□□□ -0.51
CLN3-238	ENST00000569430	LIN52	Q52LA3	116 aa		11.84	□□□□□ -0.51
CLN3-238	ENST00000569430	RNF135	Q8IUD6	432 aa		11.84	□□□□□ -0.51
CLN3-238	ENST00000569430	SULF1	Q8IWU6	871 aa		11.84	□□□□□ -0.51
CLN3-238	ENST00000569430	FAM163A	Q96GL9	167 aa	Predicted RBP	11.84	□□□□□ -0.51
CLN3-238	ENST00000569430	RPF1	Q9H9Y2	349 aa	Known RBP	11.84	□□□□□ -0.51
CLN3-238	ENST00000569430	RSAD1	Q9HA92	442 aa		11.84	□□□□□ -0.51
CLN3-238	ENST00000569430	AURKC	Q9UQB9	309 aa		11.84	□□□□□ -0.51
CLN3-238	ENST00000569430	ABLIM1	O14639	778 aa		11.84	□□□□□ -0.51
CLN3-238	ENST00000569430	APOE	P02649	317 aa		11.84	□□□□□ -0.51
CLN3-238	ENST00000569430	PML	P29590	882 aa		11.84	□□□□□ -0.51
CLN3-238	ENST00000569430	STIP1	P31948	543 aa	Known RBP	11.84	□□□□□ -0.51
CLN3-238	ENST00000569430	NLRP11	P59045	1033 aa	Known RBP	11.84	□□□□□ -0.51
CLN3-238	ENST00000569430	PRKCE	Q02156	737 aa		11.84	□□□□□ -0.51
CLN3-238	ENST00000569430	POU5F1B	Q06416	359 aa		11.84	□□□□□ -0.51
CLN3-238	ENST00000569430	ITGA9	Q13797	1035 aa		11.84	□□□□□ -0.51
CLN3-238	ENST00000569430	ANKRD22	Q5VYY1	191 aa		11.84	□□□□□ -0.51
CLN3-238	ENST00000569430	SP8	Q8IXZ3	490 aa		11.84	□□□□□ -0.51
CLN3-238	ENST00000569430	ZNF398	Q8TD17	642 aa		11.84	□□□□□ -0.51
CLN3-238	ENST00000569430	HAUS8	Q9BT25	410 aa		11.84	□□□□□ -0.51
CLN3-238	ENST00000569430	PHACTR1	Q9C0D0	580 aa		11.84	□□□□□ -0.51
CLN3-238	ENST00000569430	UPF3A	Q9H1J1	476 aa	Known RBP	11.84	□□□□□ -0.51
CLN3-238	ENST00000569430	ACSS3	Q9H6R3	686 aa		11.84	□□□□□ -0.51
CLN3-238	ENST00000569430	IL1RAPL1	Q9NZN1	696 aa		11.84	□□□□□ -0.51
CLN3-238	ENST00000569430	KPNA7	A9QM74	516 aa		11.84	□□□□□ -0.51
CLN3-238	ENST00000569430	GMNN	O75496	209 aa		11.84	□□□□□ -0.51
CLN3-238	ENST00000569430	GPC3	P51654	580 aa		11.84	□□□□□ -0.51
CLN3-238	ENST00000569430	RTP1	P59025	263 aa		11.84	□□□□□ -0.51
CLN3-238	ENST00000569430	MYL6	P60660	151 aa		11.84	□□□□□ -0.51
CLN3-238	ENST00000569430	ACTR2	P61160	394 aa		11.84	□□□□□ -0.51
CLN3-238	ENST00000569430	SLC44A4	Q53GD3	710 aa		11.84	□□□□□ -0.51
CLN3-238	ENST00000569430	MTHFD1L	Q6UB35	978 aa		11.84	□□□□□ -0.51
CLN3-238	ENST00000569430	NPNT	Q6UXI9	565 aa		11.84	□□□□□ -0.51

Retrieved 100 of 20,778 RNA–protein pairs in 74.4 ms