RNA–Protein interactions for RNA: ENST00000569243.5

UBR1-209, Transcript of ubiquitin protein ligase E3 component n-recognin 1, human

TSL 3

Gene UBR1, Length 702 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
UBR1-209	ENST00000569243	SIRT6	Q8N6T7	355 aa		4.24	□□□□□ -1.73
UBR1-209	ENST00000569243	PCSK9	Q8NBP7	692 aa	Known RBP	4.24	□□□□□ -1.73
UBR1-209	ENST00000569243	ACRBP	Q8NEB7	543 aa		4.24	□□□□□ -1.73
UBR1-209	ENST00000569243	C16orf52	Q8NHV5	167 aa		4.24	□□□□□ -1.73
UBR1-209	ENST00000569243	ZC3H10	Q96K80	434 aa	Known RBP	4.24	□□□□□ -1.73
UBR1-209	ENST00000569243	CGRRF1	Q99675	332 aa		4.24	□□□□□ -1.73
UBR1-209	ENST00000569243	SMAD5	Q99717	465 aa	Known RBP	4.24	□□□□□ -1.73
UBR1-209	ENST00000569243	DPCD	Q9BVM2	203 aa	Predicted RBP	4.24	□□□□□ -1.73
UBR1-209	ENST00000569243	DPH1	Q9BZG8	443 aa		4.24	□□□□□ -1.73
UBR1-209	ENST00000569243	CIPC	Q9C0C6	399 aa		4.24	□□□□□ -1.73
UBR1-209	ENST00000569243	XPNPEP3	Q9NQH7	507 aa		4.24	□□□□□ -1.73
UBR1-209	ENST00000569243	TYW1	Q9NV66	732 aa	Known RBP	4.24	□□□□□ -1.73
UBR1-209	ENST00000569243	AMFR	Q9UKV5	643 aa		4.24	□□□□□ -1.73
UBR1-209	ENST00000569243	SCAF8	Q9UPN6	1271 aa	Known RBP	4.24	□□□□□ -1.73
UBR1-209	ENST00000569243	hCG_1984214	I3L0E3	225 aa		4.23	□□□□□ -1.73
UBR1-209	ENST00000569243	FCHO1	O14526	889 aa		4.23	□□□□□ -1.73
UBR1-209	ENST00000569243	EXOC3	O60645	756 aa		4.23	□□□□□ -1.73
UBR1-209	ENST00000569243	RENBP	P51606	427 aa		4.23	□□□□□ -1.73
UBR1-209	ENST00000569243	NEK2	P51955	445 aa		4.23	□□□□□ -1.73
UBR1-209	ENST00000569243	RAB1A	P62820	205 aa		4.23	□□□□□ -1.73
UBR1-209	ENST00000569243	CYP1B1	Q16678	543 aa		4.23	□□□□□ -1.73
UBR1-209	ENST00000569243	PTPRO	Q16827	1216 aa		4.23	□□□□□ -1.73
UBR1-209	ENST00000569243	BRDT	Q58F21	947 aa	Predicted RBP	4.23	□□□□□ -1.73
UBR1-209	ENST00000569243	L1TD1	Q5T7N2	865 aa	Known RBP	4.23	□□□□□ -1.73
UBR1-209	ENST00000569243	DEF8	Q6ZN54	512 aa		4.23	□□□□□ -1.73
UBR1-209	ENST00000569243	BCDIN3D	Q7Z5W3	292 aa	Known RBP	4.23	□□□□□ -1.73
UBR1-209	ENST00000569243	CNGA4	Q8IV77	575 aa		4.23	□□□□□ -1.73
UBR1-209	ENST00000569243	PLBD2	Q8NHP8	589 aa		4.23	□□□□□ -1.73
UBR1-209	ENST00000569243	GADD45GIP1	Q8TAE8	222 aa	Predicted RBP	4.23	□□□□□ -1.73
UBR1-209	ENST00000569243	MARK4	Q96L34	752 aa		4.23	□□□□□ -1.73
UBR1-209	ENST00000569243	TRIM54	Q9BYV2	358 aa		4.23	□□□□□ -1.73
UBR1-209	ENST00000569243	SLC12A5	Q9H2X9	1139 aa		4.23	□□□□□ -1.73
UBR1-209	ENST00000569243	TRIM36	Q9NQ86	728 aa		4.23	□□□□□ -1.73
UBR1-209	ENST00000569243	PDGFC	Q9NRA1	345 aa		4.23	□□□□□ -1.73
UBR1-209	ENST00000569243	ZSCAN32	Q9NX65	697 aa		4.23	□□□□□ -1.73
UBR1-209	ENST00000569243	RGS17	Q9UGC6	210 aa	Predicted RBP	4.23	□□□□□ -1.73
UBR1-209	ENST00000569243	PNMA8B	Q9ULN7	279 aa	Predicted RBP	4.23	□□□□□ -1.73
UBR1-209	ENST00000569243	PROCR	Q9UNN8	238 aa		4.23	□□□□□ -1.73
UBR1-209	ENST00000569243	MRPS17	Q9Y2R5	130 aa	Known RBP	4.23	□□□□□ -1.73
UBR1-209	ENST00000569243	AFG3L2	Q9Y4W6	797 aa		4.23	□□□□□ -1.73
UBR1-209	ENST00000569243	IGF2BP2	Q9Y6M1	599 aa	Known RBP eCLIP	4.23	□□□□□ -1.73
UBR1-209	ENST00000569243	PSMD9	O00233	223 aa		4.22	□□□□□ -1.73
UBR1-209	ENST00000569243	DSCR3	O14972	297 aa		4.22	□□□□□ -1.73
UBR1-209	ENST00000569243	ABLIM3	O94929	683 aa		4.22	□□□□□ -1.73
UBR1-209	ENST00000569243	FGA	P02671	866 aa		4.22	□□□□□ -1.73
UBR1-209	ENST00000569243	ARHGAP25	P42331	645 aa		4.22	□□□□□ -1.73
UBR1-209	ENST00000569243	SUMO2	P61956	95 aa	Known RBP	4.22	□□□□□ -1.73
UBR1-209	ENST00000569243	SRSF1	Q07955	248 aa	Known RBP eCLIP	4.22	□□□□□ -1.73
UBR1-209	ENST00000569243	CCNI	Q14094	377 aa		4.22	□□□□□ -1.73
UBR1-209	ENST00000569243	RABEP1	Q15276	862 aa		4.22	□□□□□ -1.73
UBR1-209	ENST00000569243	FAM187B	Q17R55	369 aa		4.22	□□□□□ -1.73
UBR1-209	ENST00000569243	RNASE12	Q5GAN4	147 aa	Known RBP	4.22	□□□□□ -1.73
UBR1-209	ENST00000569243	CERCAM	Q5T4B2	595 aa		4.22	□□□□□ -1.73
UBR1-209	ENST00000569243	DEPDC1	Q5TB30	811 aa		4.22	□□□□□ -1.73
UBR1-209	ENST00000569243	DENND2C	Q68D51	928 aa		4.22	□□□□□ -1.73
UBR1-209	ENST00000569243	SERPINA13P	Q6UXR4	307 aa		4.22	□□□□□ -1.73
UBR1-209	ENST00000569243	ZNF783	Q6ZMS7	281 aa		4.22	□□□□□ -1.73
UBR1-209	ENST00000569243	ZNF280B	Q86YH2	543 aa		4.22	□□□□□ -1.73
UBR1-209	ENST00000569243	NANOGP1	Q8N7R0	232 aa		4.22	□□□□□ -1.73
UBR1-209	ENST00000569243	DNAJC5G	Q8N7S2	189 aa		4.22	□□□□□ -1.73
UBR1-209	ENST00000569243	AIFM3	Q96NN9	605 aa		4.22	□□□□□ -1.73
UBR1-209	ENST00000569243	NOP58	Q9Y2X3	529 aa	Known RBP	4.22	□□□□□ -1.73
UBR1-209	ENST00000569243	OBSCN	Q5VST9	7968 aa		4.22	□□□□□ -1.73
UBR1-209	ENST00000569243	TTC3	P53804	2025 aa		4.21	□□□□□ -1.74
UBR1-209	ENST00000569243	E2F8	A0AVK6	867 aa		4.21	□□□□□ -1.74
UBR1-209	ENST00000569243	TMEM232	C9JQI7	657 aa		4.21	□□□□□ -1.74
UBR1-209	ENST00000569243	MT-CO3	P00414	261 aa		4.21	□□□□□ -1.74
UBR1-209	ENST00000569243	IBSP	P21815	317 aa	Predicted RBP	4.21	□□□□□ -1.74
UBR1-209	ENST00000569243	GK	P32189	559 aa		4.21	□□□□□ -1.74
UBR1-209	ENST00000569243	BCAT1	P54687	386 aa		4.21	□□□□□ -1.74
UBR1-209	ENST00000569243	E2F1	Q01094	437 aa		4.21	□□□□□ -1.74
UBR1-209	ENST00000569243	KRT17	Q04695	432 aa		4.21	□□□□□ -1.74
UBR1-209	ENST00000569243	ZIK1	Q3SY52	487 aa	Predicted RBP	4.21	□□□□□ -1.74
UBR1-209	ENST00000569243		Q4G0T1	1027 aa		4.21	□□□□□ -1.74
UBR1-209	ENST00000569243	C10orf25	Q5T742	122 aa		4.21	□□□□□ -1.74
UBR1-209	ENST00000569243	UBE2Q1	Q7Z7E8	422 aa		4.21	□□□□□ -1.74
UBR1-209	ENST00000569243	DENND1C	Q8IV53	801 aa		4.21	□□□□□ -1.74
UBR1-209	ENST00000569243	GRAMD1C	Q8IYS0	662 aa		4.21	□□□□□ -1.74
UBR1-209	ENST00000569243	SLC15A4	Q8N697	577 aa		4.21	□□□□□ -1.74
UBR1-209	ENST00000569243	OR6B3	Q8NGW1	331 aa		4.21	□□□□□ -1.74
UBR1-209	ENST00000569243	DIS3L	Q8TF46	1054 aa	Known RBP	4.21	□□□□□ -1.74
UBR1-209	ENST00000569243	CUL5	Q93034	780 aa		4.21	□□□□□ -1.74
UBR1-209	ENST00000569243	VCPIP1	Q96JH7	1222 aa		4.21	□□□□□ -1.74
UBR1-209	ENST00000569243	CCDC17	Q96LX7	622 aa		4.21	□□□□□ -1.74
UBR1-209	ENST00000569243	CAMKK2	Q96RR4	588 aa		4.21	□□□□□ -1.74
UBR1-209	ENST00000569243	PRR25	Q96S07	402 aa		4.21	□□□□□ -1.74
UBR1-209	ENST00000569243	TRNAU1AP	Q9NX07	287 aa	Known RBP	4.21	□□□□□ -1.74
UBR1-209	ENST00000569243	PI4KB	Q9UBF8	816 aa		4.21	□□□□□ -1.74
UBR1-209	ENST00000569243	SNX14	Q9Y5W7	946 aa		4.21	□□□□□ -1.74
UBR1-209	ENST00000569243	LY6G6E	A0A0G2JKS1	128 aa		4.2	□□□□□ -1.74
UBR1-209	ENST00000569243	KRT86	O43790	486 aa		4.2	□□□□□ -1.74
UBR1-209	ENST00000569243	PMPCB	O75439	489 aa		4.2	□□□□□ -1.74
UBR1-209	ENST00000569243	PDE8B	O95263	885 aa		4.2	□□□□□ -1.74
UBR1-209	ENST00000569243	PF4V1	P10720	104 aa		4.2	□□□□□ -1.74
UBR1-209	ENST00000569243	MT3	P25713	68 aa		4.2	□□□□□ -1.74
UBR1-209	ENST00000569243	ADORA2A	P29274	412 aa		4.2	□□□□□ -1.74
UBR1-209	ENST00000569243	PRKAR1B	P31321	381 aa		4.2	□□□□□ -1.74
UBR1-209	ENST00000569243	KRT81	Q14533	505 aa		4.2	□□□□□ -1.74
UBR1-209	ENST00000569243	PLA1A	Q53H76	456 aa		4.2	□□□□□ -1.74
UBR1-209	ENST00000569243	LINC01465	Q8N7H1	131 aa		4.2	□□□□□ -1.74

Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms