RNA–Protein interactions for RNA: ENST00000568642.5

VPS35-209, Transcript of VPS35, retromer complex component, humanhuman

TSL 3

Gene VPS35, Length 447 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-209ENST00000568642 PHF7Q9BWX1 381 aaPredicted RBP3.28□□□□□ -1.88
VPS35-209ENST00000568642 ANO3Q9BYT9 981 aa3.28□□□□□ -1.88
VPS35-209ENST00000568642 GPR63Q9BZJ6 419 aa3.28□□□□□ -1.88
VPS35-209ENST00000568642 PRDM14Q9GZV8 571 aa3.28□□□□□ -1.88
VPS35-209ENST00000568642 NDST4Q9H3R1 872 aa3.28□□□□□ -1.88
VPS35-209ENST00000568642 ARMT1Q9H993 441 aa3.28□□□□□ -1.88
VPS35-209ENST00000568642 IL21RQ9HBE5 538 aa3.28□□□□□ -1.88
VPS35-209ENST00000568642 PRDM8Q9NQV8 689 aa3.28□□□□□ -1.88
VPS35-209ENST00000568642 PICK1Q9NRD5 415 aa3.28□□□□□ -1.88
VPS35-209ENST00000568642 TOMM22Q9NS69 142 aa3.28□□□□□ -1.88
VPS35-209ENST00000568642 RRP7BPQ9NSQ0 103 aa3.28□□□□□ -1.88
VPS35-209ENST00000568642 MCM9Q9NXL9 1143 aa3.28□□□□□ -1.88
VPS35-209ENST00000568642 KCTD5Q9NXV2 234 aa3.28□□□□□ -1.88
VPS35-209ENST00000568642 USP36Q9P275 1121 aaKnown RBP3.28□□□□□ -1.88
VPS35-209ENST00000568642 MSRAQ9UJ68 235 aa3.28□□□□□ -1.88
VPS35-209ENST00000568642 RPS6KA6Q9UK32 745 aa3.28□□□□□ -1.88
VPS35-209ENST00000568642 ZMYND8Q9ULU4 1186 aaPredicted RBP3.28□□□□□ -1.88
VPS35-209ENST00000568642 ANGEL1Q9UNK9 670 aaKnown RBP3.28□□□□□ -1.88
VPS35-209ENST00000568642 SMG5Q9UPR3 1016 aaKnown RBP3.28□□□□□ -1.88
VPS35-209ENST00000568642 USP15Q9Y4E8 981 aaPredicted RBP3.28□□□□□ -1.88
VPS35-209ENST00000568642 ADGRB1O14514 1584 aa3.28□□□□□ -1.88
VPS35-209ENST00000568642 MYO9AB2RTY4 2548 aa3.28□□□□□ -1.88
VPS35-209ENST00000568642 ATRNL1Q5VV63 1379 aa3.27□□□□□ -1.89
VPS35-209ENST00000568642 MYPNQ86TC9 1320 aa3.27□□□□□ -1.89
VPS35-209ENST00000568642 ANKRD31Q8N7Z5 1873 aa3.27□□□□□ -1.89
VPS35-209ENST00000568642 A0A0B4J203 849 aa3.27□□□□□ -1.89
VPS35-209ENST00000568642 A0A1W2PPL8 197 aa3.27□□□□□ -1.89
VPS35-209ENST00000568642 A8MXE2 369 aa3.27□□□□□ -1.89
VPS35-209ENST00000568642 PIP5K1BO14986 540 aa3.27□□□□□ -1.89
VPS35-209ENST00000568642 FANCGO15287 622 aa3.27□□□□□ -1.89
VPS35-209ENST00000568642 DHX15O43143 795 aaKnown RBP3.27□□□□□ -1.89
VPS35-209ENST00000568642 ASAP2O43150 1006 aa3.27□□□□□ -1.89
VPS35-209ENST00000568642 KCNQ3O43525 872 aa3.27□□□□□ -1.89
VPS35-209ENST00000568642 TSPAN3O60637 253 aa3.27□□□□□ -1.89
VPS35-209ENST00000568642 KINO60870 393 aaKnown RBP3.27□□□□□ -1.89
VPS35-209ENST00000568642 BEST1O76090 585 aa3.27□□□□□ -1.89
VPS35-209ENST00000568642 FARP2O94887 1054 aaPredicted RBP3.27□□□□□ -1.89
VPS35-209ENST00000568642 TK1P04183 234 aa3.27□□□□□ -1.89
VPS35-209ENST00000568642 CHGBP05060 677 aa3.27□□□□□ -1.89
VPS35-209ENST00000568642 GJB1P08034 283 aa3.27□□□□□ -1.89
VPS35-209ENST00000568642 SNRNP70P08621 437 aaKnown RBP3.27□□□□□ -1.89
VPS35-209ENST00000568642 QDPRP09417 244 aa3.27□□□□□ -1.89
VPS35-209ENST00000568642 CSH1P0DML2 217 aa3.27□□□□□ -1.89
VPS35-209ENST00000568642 CSH2P0DML3 217 aa3.27□□□□□ -1.89
VPS35-209ENST00000568642 CYP2A6P11509 494 aaPredicted RBP3.27□□□□□ -1.89
VPS35-209ENST00000568642 DESP17661 470 aa3.27□□□□□ -1.89
VPS35-209ENST00000568642 MAOBP27338 520 aa3.27□□□□□ -1.89
VPS35-209ENST00000568642 ADSLP30566 484 aaPredicted RBP3.27□□□□□ -1.89
VPS35-209ENST00000568642 HOXA11P31270 313 aaPredicted RBP3.27□□□□□ -1.89
VPS35-209ENST00000568642 TLX1P31314 330 aaPredicted RBP3.27□□□□□ -1.89
VPS35-209ENST00000568642 THBS2P35442 1172 aa3.27□□□□□ -1.89
VPS35-209ENST00000568642 ATP6V1E1P36543 226 aa3.27□□□□□ -1.89
VPS35-209ENST00000568642 EPS15P42566 896 aa3.27□□□□□ -1.89
VPS35-209ENST00000568642 SLC12A3P55017 1021 aa3.27□□□□□ -1.89
VPS35-209ENST00000568642 MRPS35P82673 323 aaKnown RBP3.27□□□□□ -1.89
VPS35-209ENST00000568642 RBP5P82980 135 aa3.27□□□□□ -1.89
VPS35-209ENST00000568642 IRF9Q00978 393 aa3.27□□□□□ -1.89
VPS35-209ENST00000568642 ACTN3Q08043 901 aaPredicted RBP3.27□□□□□ -1.89
VPS35-209ENST00000568642 LRRC74AQ0VAA2 488 aa3.27□□□□□ -1.89
VPS35-209ENST00000568642 FGL2Q14314 439 aa3.27□□□□□ -1.89
VPS35-209ENST00000568642 TNIP1Q15025 636 aa3.27□□□□□ -1.89
VPS35-209ENST00000568642 BAK1Q16611 211 aa3.27□□□□□ -1.89
VPS35-209ENST00000568642 MAN2A1Q16706 1144 aa3.27□□□□□ -1.89
VPS35-209ENST00000568642 MSMPQ1L6U9 139 aa3.27□□□□□ -1.89
VPS35-209ENST00000568642 DPY19L1Q2PZI1 675 aa3.27□□□□□ -1.89
VPS35-209ENST00000568642 ANKDD1AQ495B1 522 aa3.27□□□□□ -1.89
VPS35-209ENST00000568642 CATSPEREQ5SY80 951 aa3.27□□□□□ -1.89
VPS35-209ENST00000568642 PRAMEF13Q5VWM6 474 aa3.27□□□□□ -1.89
VPS35-209ENST00000568642 NAA16Q6N069 864 aaPredicted RBP3.27□□□□□ -1.89
VPS35-209ENST00000568642 C16orf87Q6PH81 154 aa3.27□□□□□ -1.89
VPS35-209ENST00000568642 FIP1L1Q6UN15 594 aaKnown RBP3.27□□□□□ -1.89
VPS35-209ENST00000568642 LCNL1Q6ZST4 164 aa3.27□□□□□ -1.89
VPS35-209ENST00000568642 KIAA0408Q6ZU52 694 aa3.27□□□□□ -1.89
VPS35-209ENST00000568642 USP49Q70CQ1 688 aa3.27□□□□□ -1.89
VPS35-209ENST00000568642 RASAL3Q86YV0 1011 aa3.27□□□□□ -1.89
VPS35-209ENST00000568642 HID1Q8IV36 788 aa3.27□□□□□ -1.89
VPS35-209ENST00000568642 SLC44A2Q8IWA5 706 aaPredicted RBP3.27□□□□□ -1.89
VPS35-209ENST00000568642 SUGP2Q8IX01 1082 aaKnown RBP eCLIP3.27□□□□□ -1.89
VPS35-209ENST00000568642 RPAP2Q8IXW5 612 aaPredicted RBP3.27□□□□□ -1.89
VPS35-209ENST00000568642 CCDC170Q8IYT3 715 aa3.27□□□□□ -1.89
VPS35-209ENST00000568642 ANKRD35Q8N283 1001 aa3.27□□□□□ -1.89
VPS35-209ENST00000568642 ZBTB44Q8NCP5 570 aa3.27□□□□□ -1.89
VPS35-209ENST00000568642 SPATA18Q8TC71 538 aa3.27□□□□□ -1.89
VPS35-209ENST00000568642 UTP15Q8TED0 518 aaKnown RBP3.27□□□□□ -1.89
VPS35-209ENST00000568642 DENND1AQ8TEH3 1009 aa3.27□□□□□ -1.89
VPS35-209ENST00000568642 USP6NLQ92738 828 aa3.27□□□□□ -1.89
VPS35-209ENST00000568642 HOXB13Q92826 284 aaPredicted RBP3.27□□□□□ -1.89
VPS35-209ENST00000568642 FOXRED1Q96CU9 486 aaPredicted RBP3.27□□□□□ -1.89
VPS35-209ENST00000568642 ERO1AQ96HE7 468 aa3.27□□□□□ -1.89
VPS35-209ENST00000568642 MRGPRX4Q96LA9 322 aa3.27□□□□□ -1.89
VPS35-209ENST00000568642 KREMEN1Q96MU8 473 aa3.27□□□□□ -1.89
VPS35-209ENST00000568642 ZNF830Q96NB3 372 aaPredicted RBP3.27□□□□□ -1.89
VPS35-209ENST00000568642 SAMD11Q96NU1 681 aa3.27□□□□□ -1.89
VPS35-209ENST00000568642 AGAP2Q99490 1192 aa3.27□□□□□ -1.89
VPS35-209ENST00000568642 METTL22Q9BUU2 404 aaPredicted RBP3.27□□□□□ -1.89
VPS35-209ENST00000568642 TEX13BQ9BXU2 312 aa3.27□□□□□ -1.89
VPS35-209ENST00000568642 TTYH1Q9H313 450 aaPredicted RBP3.27□□□□□ -1.89
VPS35-209ENST00000568642 R3HDMLQ9H3Y0 253 aa3.27□□□□□ -1.89
VPS35-209ENST00000568642 ABHD16BQ9H3Z7 469 aa3.27□□□□□ -1.89
VPS35-209ENST00000568642 DNAJC18Q9H819 358 aa3.27□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms