RNA–Protein interactions for RNA: ENST00000568497.6

CLN3-235, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 758 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-235ENST00000568497 ATF2P15336 505 aa14.8□□□□□ -0.04
CLN3-235ENST00000568497 CD58P19256 250 aa14.8□□□□□ -0.04
CLN3-235ENST00000568497 VIPR2P41587 438 aa14.8□□□□□ -0.04
CLN3-235ENST00000568497 SOX9P48436 509 aa14.8□□□□□ -0.04
CLN3-235ENST00000568497 MXI1P50539 228 aa14.8□□□□□ -0.04
CLN3-235ENST00000568497 CACNA2D1P54289 1103 aa14.8□□□□□ -0.04
CLN3-235ENST00000568497 LRRC63Q05C16 580 aa14.8□□□□□ -0.04
CLN3-235ENST00000568497 DDR2Q16832 855 aa14.8□□□□□ -0.04
CLN3-235ENST00000568497 MGAT5BQ3V5L5 792 aa14.8□□□□□ -0.04
CLN3-235ENST00000568497 MDH1BQ5I0G3 518 aa14.8□□□□□ -0.04
CLN3-235ENST00000568497 DGKKQ5KSL6 1271 aa14.8□□□□□ -0.04
CLN3-235ENST00000568497 PLA2G2CQ5R387 149 aa14.8□□□□□ -0.04
CLN3-235ENST00000568497 PDZD4Q76G19 769 aaPredicted RBP14.8□□□□□ -0.04
CLN3-235ENST00000568497 IRF2BP1Q8IU81 584 aa14.8□□□□□ -0.04
CLN3-235ENST00000568497 THEM5Q8N1Q8 247 aa14.8□□□□□ -0.04
CLN3-235ENST00000568497 TOP6BLQ8N6T0 577 aa14.8□□□□□ -0.04
CLN3-235ENST00000568497 SMARCD2Q92925 531 aa14.8□□□□□ -0.04
CLN3-235ENST00000568497 KAT5Q92993 513 aa14.8□□□□□ -0.04
CLN3-235ENST00000568497 MYLPFQ96A32 169 aa14.8□□□□□ -0.04
CLN3-235ENST00000568497 PKMYT1Q99640 499 aa14.8□□□□□ -0.04
CLN3-235ENST00000568497 SYT15Q9BQS2 421 aa14.8□□□□□ -0.04
CLN3-235ENST00000568497 GCN1Q92616 2671 aaKnown RBP14.79□□□□□ -0.04
CLN3-235ENST00000568497 ARHGEF37A1IGU5 675 aa14.79□□□□□ -0.04
CLN3-235ENST00000568497 ZNF197O14709 1029 aa14.79□□□□□ -0.04
CLN3-235ENST00000568497 GABRDO14764 452 aa14.79□□□□□ -0.04
CLN3-235ENST00000568497 MYL4P12829 197 aa14.79□□□□□ -0.04
CLN3-235ENST00000568497 ATF6P18850 670 aa14.79□□□□□ -0.04
CLN3-235ENST00000568497 GNL1P36915 607 aaPredicted RBP14.79□□□□□ -0.04
CLN3-235ENST00000568497 ASPAP45381 313 aa14.79□□□□□ -0.04
CLN3-235ENST00000568497 NOP14P78316 857 aaKnown RBP14.79□□□□□ -0.04
CLN3-235ENST00000568497 GPR17Q13304 367 aa14.79□□□□□ -0.04
CLN3-235ENST00000568497 ZNF667Q5HYK9 610 aa14.79□□□□□ -0.04
CLN3-235ENST00000568497 INTS6LQ5JSJ4 861 aaKnown RBP14.79□□□□□ -0.04
CLN3-235ENST00000568497 STXBP5Q5T5C0 1151 aa14.79□□□□□ -0.04
CLN3-235ENST00000568497 DPH6Q7L8W6 267 aa14.79□□□□□ -0.04
CLN3-235ENST00000568497 LIMS2Q7Z4I7 341 aa14.79□□□□□ -0.04
CLN3-235ENST00000568497 TMEM174Q8WUU8 243 aa14.79□□□□□ -0.04
CLN3-235ENST00000568497 SLC35C1Q96A29 364 aa14.79□□□□□ -0.04
CLN3-235ENST00000568497 SNX25Q9H3E2 840 aa14.79□□□□□ -0.04
CLN3-235ENST00000568497 SLITRK6Q9H5Y7 841 aa14.79□□□□□ -0.04
CLN3-235ENST00000568497 TMEM8AQ9HCN3 771 aa14.79□□□□□ -0.04
CLN3-235ENST00000568497 SAMSN1Q9NSI8 373 aaKnown RBP14.79□□□□□ -0.04
CLN3-235ENST00000568497 TMEM30AQ9NV96 361 aa14.79□□□□□ -0.04
CLN3-235ENST00000568497 ARMCX3Q9UH62 379 aaPredicted RBP14.79□□□□□ -0.04
CLN3-235ENST00000568497 MAPK13O15264 365 aa14.78□□□□□ -0.04
CLN3-235ENST00000568497 SLC16A3O15427 465 aaKnown RBP14.78□□□□□ -0.04
CLN3-235ENST00000568497 ASS1P00966 412 aaKnown RBP14.78□□□□□ -0.04
CLN3-235ENST00000568497 CCDC130P13994 396 aa14.78□□□□□ -0.04
CLN3-235ENST00000568497 WARSP23381 471 aaKnown RBP14.78□□□□□ -0.04
CLN3-235ENST00000568497 CYP27A1Q02318 531 aa14.78□□□□□ -0.04
CLN3-235ENST00000568497 CREB5Q02930 508 aa14.78□□□□□ -0.04
CLN3-235ENST00000568497 PLD1Q13393 1074 aa14.78□□□□□ -0.04
CLN3-235ENST00000568497 ZNF394Q53GI3 561 aa14.78□□□□□ -0.04
CLN3-235ENST00000568497 CYP4A22Q5TCH4 519 aa14.78□□□□□ -0.04
CLN3-235ENST00000568497 FILIP1Q7Z7B0 1213 aa14.78□□□□□ -0.04
CLN3-235ENST00000568497 ACOT1Q86TX2 421 aa14.78□□□□□ -0.04
CLN3-235ENST00000568497 SCN4BQ8IWT1 228 aa14.78□□□□□ -0.04
CLN3-235ENST00000568497 TCEAL8Q8IYN2 117 aa14.78□□□□□ -0.04
CLN3-235ENST00000568497 TRIML1Q8N9V2 468 aa14.78□□□□□ -0.04
CLN3-235ENST00000568497 TTC8Q8TAM2 541 aa14.78□□□□□ -0.04
CLN3-235ENST00000568497 SYAP1Q96A49 352 aaPredicted RBP14.78□□□□□ -0.04
CLN3-235ENST00000568497 CNOT6LQ96LI5 555 aaKnown RBP14.78□□□□□ -0.04
CLN3-235ENST00000568497 ZSWIM3Q96MP5 696 aa14.78□□□□□ -0.04
CLN3-235ENST00000568497 MKNK1Q9BUB5 465 aa14.78□□□□□ -0.04
CLN3-235ENST00000568497 C8orf33Q9H7E9 229 aaPredicted RBP14.78□□□□□ -0.04
CLN3-235ENST00000568497 FAM49BQ9NUQ9 324 aa14.78□□□□□ -0.04
CLN3-235ENST00000568497 RWDD2AQ9UIY3 292 aa14.78□□□□□ -0.04
CLN3-235ENST00000568497 DSEQ9UL01 958 aa14.78□□□□□ -0.04
CLN3-235ENST00000568497 WDFY3Q8IZQ1 3526 aa14.78□□□□□ -0.04
CLN3-235ENST00000568497 FLNBO75369 2602 aaKnown RBP14.78□□□□□ -0.04
CLN3-235ENST00000568497 EIF4E1BA6NMX2 242 aaKnown RBP14.77□□□□□ -0.05
CLN3-235ENST00000568497 A8MXQ7 604 aa14.77□□□□□ -0.05
CLN3-235ENST00000568497 ARNTLO00327 626 aa14.77□□□□□ -0.05
CLN3-235ENST00000568497 HYAL3O43820 417 aaPredicted RBP14.77□□□□□ -0.05
CLN3-235ENST00000568497 MOSPD3O75425 235 aa14.77□□□□□ -0.05
CLN3-235ENST00000568497 CEACAM1P13688 526 aa14.77□□□□□ -0.05
CLN3-235ENST00000568497 BDNFP23560 247 aa14.77□□□□□ -0.05
CLN3-235ENST00000568497 NDST1P52848 882 aa14.77□□□□□ -0.05
CLN3-235ENST00000568497 MYL7Q01449 175 aa14.77□□□□□ -0.05
CLN3-235ENST00000568497 TSPY1Q01534 308 aa14.77□□□□□ -0.05
CLN3-235ENST00000568497 PON2Q15165 354 aa14.77□□□□□ -0.05
CLN3-235ENST00000568497 SOWAHCQ53LP3 525 aaPredicted RBP14.77□□□□□ -0.05
CLN3-235ENST00000568497 WDR44Q5JSH3 913 aa14.77□□□□□ -0.05
CLN3-235ENST00000568497 CCDC183Q5T5S1 534 aa14.77□□□□□ -0.05
CLN3-235ENST00000568497 TPGS2Q68CL5 300 aa14.77□□□□□ -0.05
CLN3-235ENST00000568497 KRT39Q6A163 491 aa14.77□□□□□ -0.05
CLN3-235ENST00000568497 GJB7Q6PEY0 223 aa14.77□□□□□ -0.05
CLN3-235ENST00000568497 C19orf48Q6RUI8 117 aa14.77□□□□□ -0.05
CLN3-235ENST00000568497 MFSD6LQ8IWD5 586 aa14.77□□□□□ -0.05
CLN3-235ENST00000568497 ELMOD1Q8N336 334 aa14.77□□□□□ -0.05
CLN3-235ENST00000568497 C12orf29Q8N999 325 aa14.77□□□□□ -0.05
CLN3-235ENST00000568497 ZSCAN18Q8TBC5 510 aaPredicted RBP14.77□□□□□ -0.05
CLN3-235ENST00000568497 JAKMIP2Q96AA8 810 aa14.77□□□□□ -0.05
CLN3-235ENST00000568497 CEP63Q96MT8 703 aa14.77□□□□□ -0.05
CLN3-235ENST00000568497 CRACR2AQ9BSW2 395 aa14.77□□□□□ -0.05
CLN3-235ENST00000568497 B3GNT5Q9BYG0 378 aa14.77□□□□□ -0.05
CLN3-235ENST00000568497 ZNF518BQ9C0D4 1074 aa14.77□□□□□ -0.05
CLN3-235ENST00000568497 ELOVL4Q9GZR5 314 aa14.77□□□□□ -0.05
CLN3-235ENST00000568497 TRPV4Q9HBA0 871 aa14.77□□□□□ -0.05
CLN3-235ENST00000568497 DSPP15924 2871 aaKnown RBP14.77□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms