RNA–Protein interactions for RNA: ENST00000566057.5

CLN3-221, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 931 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-221ENST00000566057 WHAMMQ8TF30 809 aa19.51■□□□□ 0.71
CLN3-221ENST00000566057 SMARCD1Q96GM5 515 aa19.51■□□□□ 0.71
CLN3-221ENST00000566057 DHTKD1Q96HY7 919 aaPredicted RBP19.51■□□□□ 0.71
CLN3-221ENST00000566057 SMOQ99835 787 aa19.51■□□□□ 0.71
CLN3-221ENST00000566057 RNF38Q9H0F5 515 aa19.51■□□□□ 0.71
CLN3-221ENST00000566057 CYP3A43Q9HB55 503 aa19.51■□□□□ 0.71
CLN3-221ENST00000566057 FAM49BQ9NUQ9 324 aa19.51■□□□□ 0.71
CLN3-221ENST00000566057 RAB20Q9NX57 234 aa19.51■□□□□ 0.71
CLN3-221ENST00000566057 EHD2Q9NZN4 543 aa19.51■□□□□ 0.71
CLN3-221ENST00000566057 CHMP5Q9NZZ3 219 aa19.51■□□□□ 0.71
CLN3-221ENST00000566057 ATP8B3O60423 1300 aa19.51■□□□□ 0.71
CLN3-221ENST00000566057 BIN1O00499 593 aa19.5■□□□□ 0.71
CLN3-221ENST00000566057 PSMA7O14818 248 aa19.5■□□□□ 0.71
CLN3-221ENST00000566057 LAMTOR5O43504 91 aa19.5■□□□□ 0.71
CLN3-221ENST00000566057 GFRA3O60609 400 aa19.5■□□□□ 0.71
CLN3-221ENST00000566057 CILPO75339 1184 aa19.5■□□□□ 0.71
CLN3-221ENST00000566057 ARSAP15289 507 aa19.5■□□□□ 0.71
CLN3-221ENST00000566057 CD58P19256 250 aa19.5■□□□□ 0.71
CLN3-221ENST00000566057 YWHAQP27348 245 aa19.5■□□□□ 0.71
CLN3-221ENST00000566057 MXI1P50539 228 aa19.5■□□□□ 0.71
CLN3-221ENST00000566057 RUNX3Q13761 415 aa19.5■□□□□ 0.71
CLN3-221ENST00000566057 MORC3Q14149 939 aa19.5■□□□□ 0.71
CLN3-221ENST00000566057 MTF1Q14872 753 aa19.5■□□□□ 0.71
CLN3-221ENST00000566057 DCAF17Q5H9S7 520 aaPredicted RBP19.5■□□□□ 0.71
CLN3-221ENST00000566057 TCERG1LQ5VWI1 586 aa19.5■□□□□ 0.71
CLN3-221ENST00000566057 ASCL5Q7RTU5 278 aa19.5■□□□□ 0.71
CLN3-221ENST00000566057 FBXL13Q8NEE6 735 aa19.5■□□□□ 0.71
CLN3-221ENST00000566057 SH3RF2Q8TEC5 729 aa19.5■□□□□ 0.71
CLN3-221ENST00000566057 CHFRQ96EP1 664 aa19.5■□□□□ 0.71
CLN3-221ENST00000566057 MSANTD3Q96H12 275 aa19.5■□□□□ 0.71
CLN3-221ENST00000566057 DUSP9Q99956 384 aaKnown RBP19.5■□□□□ 0.71
CLN3-221ENST00000566057 CHRDQ9H2X0 955 aa19.5■□□□□ 0.71
CLN3-221ENST00000566057 DMAP1Q9NPF5 467 aaPredicted RBP19.5■□□□□ 0.71
CLN3-221ENST00000566057 KRT82Q9NSB4 513 aa19.5■□□□□ 0.71
CLN3-221ENST00000566057 RBM12Q9NTZ6 932 aaKnown RBP19.5■□□□□ 0.71
CLN3-221ENST00000566057 IL37Q9NZH6 218 aa19.5■□□□□ 0.71
CLN3-221ENST00000566057 R4GN57 208 aa19.5■□□□□ 0.71
CLN3-221ENST00000566057 GVINP1Q7Z2Y8 2422 aa19.5■□□□□ 0.71
CLN3-221ENST00000566057 STX10O60499 249 aa19.49■□□□□ 0.71
CLN3-221ENST00000566057 RTN3O95197 1032 aaPredicted RBP19.49■□□□□ 0.71
CLN3-221ENST00000566057 ABL1P00519 1130 aa19.49■□□□□ 0.71
CLN3-221ENST00000566057 ADORA2BP29275 332 aa19.49■□□□□ 0.71
CLN3-221ENST00000566057 PPP3CCP48454 512 aa19.49■□□□□ 0.71
CLN3-221ENST00000566057 MAP3K7CLP57077 242 aa19.49■□□□□ 0.71
CLN3-221ENST00000566057 CSTF1Q05048 431 aaKnown RBP19.49■□□□□ 0.71
CLN3-221ENST00000566057 USP4Q13107 963 aa19.49■□□□□ 0.71
CLN3-221ENST00000566057 STIM1Q13586 685 aa19.49■□□□□ 0.71
CLN3-221ENST00000566057 PON2Q15165 354 aa19.49■□□□□ 0.71
CLN3-221ENST00000566057 KLHL10Q6JEL2 608 aa19.49■□□□□ 0.71
CLN3-221ENST00000566057 CC2D1AQ6P1N0 951 aaPredicted RBP19.49■□□□□ 0.71
CLN3-221ENST00000566057 CCDC150Q8NCX0 1101 aa19.49■□□□□ 0.71
CLN3-221ENST00000566057 TATDN2Q93075 761 aa19.49■□□□□ 0.71
CLN3-221ENST00000566057 SLITRK1Q96PX8 696 aa19.49■□□□□ 0.71
CLN3-221ENST00000566057 NT5C1AQ9BXI3 368 aa19.49■□□□□ 0.71
CLN3-221ENST00000566057 CSNK1G1Q9HCP0 422 aa19.49■□□□□ 0.71
CLN3-221ENST00000566057 ARMCX3Q9UH62 379 aaPredicted RBP19.49■□□□□ 0.71
CLN3-221ENST00000566057 CHORDC1Q9UHD1 332 aaPredicted RBP19.49■□□□□ 0.71
CLN3-221ENST00000566057 ARHGAP26Q9UNA1 814 aa19.49■□□□□ 0.71
CLN3-221ENST00000566057 SPTBN4Q9H254 2564 aa19.48■□□□□ 0.71
CLN3-221ENST00000566057 PRR23AA6NEV1 266 aa19.48■□□□□ 0.71
CLN3-221ENST00000566057 OAS1P00973 400 aaKnown RBP19.48■□□□□ 0.71
CLN3-221ENST00000566057 SLC5A3P53794 718 aa19.48■□□□□ 0.71
CLN3-221ENST00000566057 GAS6Q14393 721 aa19.48■□□□□ 0.71
CLN3-221ENST00000566057 TTI2Q6NXR4 508 aa19.48■□□□□ 0.71
CLN3-221ENST00000566057 C1orf228Q6PIY5 440 aa19.48■□□□□ 0.71
CLN3-221ENST00000566057 TSSK4Q6SA08 328 aa19.48■□□□□ 0.71
CLN3-221ENST00000566057 FBXO32Q969P5 355 aa19.48■□□□□ 0.71
CLN3-221ENST00000566057 SLC35C1Q96A29 364 aa19.48■□□□□ 0.71
CLN3-221ENST00000566057 CYFIP2Q96F07 1278 aa19.48■□□□□ 0.71
CLN3-221ENST00000566057 HNRNPABQ99729 332 aaKnown RBP19.48■□□□□ 0.71
CLN3-221ENST00000566057 ARID3AQ99856 593 aa19.48■□□□□ 0.71
CLN3-221ENST00000566057 LINC00597Q9H2U6 94 aa19.48■□□□□ 0.71
CLN3-221ENST00000566057 DUS2Q9NX74 493 aaKnown RBP19.48■□□□□ 0.71
CLN3-221ENST00000566057 FBXO4Q9UKT5 387 aa19.48■□□□□ 0.71
CLN3-221ENST00000566057 COQ4Q9Y3A0 265 aa19.48■□□□□ 0.71
CLN3-221ENST00000566057 WNT6Q9Y6F9 365 aa19.48■□□□□ 0.71
CLN3-221ENST00000566057 LEFTY2O00292 366 aa19.47■□□□□ 0.71
CLN3-221ENST00000566057 OLFM2O95897 454 aa19.47■□□□□ 0.71
CLN3-221ENST00000566057 TCF3P15923 654 aa19.47■□□□□ 0.71
CLN3-221ENST00000566057 PFKLP17858 780 aa19.47■□□□□ 0.71
CLN3-221ENST00000566057 PGFP49763 221 aa19.47■□□□□ 0.71
CLN3-221ENST00000566057 UBE2HP62256 183 aa19.47■□□□□ 0.71
CLN3-221ENST00000566057 SLC7A9P82251 487 aa19.47■□□□□ 0.71
CLN3-221ENST00000566057 PDGFRLQ15198 375 aa19.47■□□□□ 0.71
CLN3-221ENST00000566057 ZNF394Q53GI3 561 aa19.47■□□□□ 0.71
CLN3-221ENST00000566057 FILIP1Q7Z7B0 1213 aa19.47■□□□□ 0.71
CLN3-221ENST00000566057 OSCP1Q8WVF1 389 aa19.47■□□□□ 0.71
CLN3-221ENST00000566057 NELFBQ8WX92 580 aa19.47■□□□□ 0.71
CLN3-221ENST00000566057 NKD2Q969F2 451 aaPredicted RBP19.47■□□□□ 0.71
CLN3-221ENST00000566057 CISHQ9NSE2 258 aa19.47■□□□□ 0.71
CLN3-221ENST00000566057 OTOGLQ3ZCN5 2332 aa19.47■□□□□ 0.71
CLN3-221ENST00000566057 FAM92AA1XBS5 289 aa19.46■□□□□ 0.71
CLN3-221ENST00000566057 PDE6CP51160 858 aa19.46■□□□□ 0.71
CLN3-221ENST00000566057 CCINQ13939 588 aa19.46■□□□□ 0.71
CLN3-221ENST00000566057 CAMK4Q16566 473 aa19.46■□□□□ 0.71
CLN3-221ENST00000566057 EML3Q32P44 896 aa19.46■□□□□ 0.71
CLN3-221ENST00000566057 ZNF528Q3MIS6 628 aa19.46■□□□□ 0.71
CLN3-221ENST00000566057 NAIF1Q69YI7 327 aaPredicted RBP19.46■□□□□ 0.71
CLN3-221ENST00000566057 MAMSTRQ6ZN01 415 aa19.46■□□□□ 0.71
CLN3-221ENST00000566057 Q6ZS52 159 aa19.46■□□□□ 0.71
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms