RNA–Protein interactions for RNA: ENST00000564593.1

LINC00560-201, long intergenic non-protein coding RNA 560, humanhuman

TSL 1 (best) BASIC

Gene LINC00560, Length 1,599 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00560-201ENST00000564593 FZD1Q9UP38 647 aa5.51□□□□□ -1.53
LINC00560-201ENST00000564593 FER1L4A9Z1Z3 1794 aa5.51□□□□□ -1.53
LINC00560-201ENST00000564593 SYT5O00445 386 aa5.5□□□□□ -1.53
LINC00560-201ENST00000564593 PPM1DO15297 605 aa5.5□□□□□ -1.53
LINC00560-201ENST00000564593 CCNT2O60583 730 aaKnown RBP5.5□□□□□ -1.53
LINC00560-201ENST00000564593 LPXNO60711 386 aa5.5□□□□□ -1.53
LINC00560-201ENST00000564593 HGFP14210 728 aa5.5□□□□□ -1.53
LINC00560-201ENST00000564593 PECAM1P16284 738 aaPredicted RBP5.5□□□□□ -1.53
LINC00560-201ENST00000564593 SERPINF1P36955 418 aa5.5□□□□□ -1.53
LINC00560-201ENST00000564593 PGDP52209 483 aa5.5□□□□□ -1.53
LINC00560-201ENST00000564593 HNRNPMP52272 730 aaKnown RBP eCLIP5.5□□□□□ -1.53
LINC00560-201ENST00000564593 ADAM17P78536 824 aa5.5□□□□□ -1.53
LINC00560-201ENST00000564593 SLC5A9Q2M3M2 681 aa5.5□□□□□ -1.53
LINC00560-201ENST00000564593 TMEM95Q3KNT9 176 aa5.5□□□□□ -1.53
LINC00560-201ENST00000564593 HSP90AB4PQ58FF6 505 aa5.5□□□□□ -1.53
LINC00560-201ENST00000564593 DEPDC1Q5TB30 811 aa5.5□□□□□ -1.53
LINC00560-201ENST00000564593 GPR149Q86SP6 731 aa5.5□□□□□ -1.53
LINC00560-201ENST00000564593 ZNF354CQ86Y25 554 aa5.5□□□□□ -1.53
LINC00560-201ENST00000564593 SSH3Q8TE77 659 aa5.5□□□□□ -1.53
LINC00560-201ENST00000564593 STYXQ8WUJ0 223 aa5.5□□□□□ -1.53
LINC00560-201ENST00000564593 OSCP1Q8WVF1 389 aa5.5□□□□□ -1.53
LINC00560-201ENST00000564593 ATRIPQ8WXE1 791 aa5.5□□□□□ -1.53
LINC00560-201ENST00000564593 ATG4AQ8WYN0 398 aa5.5□□□□□ -1.53
LINC00560-201ENST00000564593 FUBP1Q96AE4 644 aaKnown RBP5.5□□□□□ -1.53
LINC00560-201ENST00000564593 ZBTB45Q96K62 511 aaPredicted RBP5.5□□□□□ -1.53
LINC00560-201ENST00000564593 PRPF18Q99633 342 aaKnown RBP5.5□□□□□ -1.53
LINC00560-201ENST00000564593 MAGEH1Q9H213 219 aa5.5□□□□□ -1.53
LINC00560-201ENST00000564593 TMEM8AQ9HCN3 771 aa5.5□□□□□ -1.53
LINC00560-201ENST00000564593 GRHPRQ9UBQ7 328 aa5.5□□□□□ -1.53
LINC00560-201ENST00000564593 PCDHGB3Q9Y5G1 929 aa5.5□□□□□ -1.53
LINC00560-201ENST00000564593 CENPVL1A0A0U1RR11 272 aa5.5□□□□□ -1.53
LINC00560-201ENST00000564593 ACKR2O00590 384 aa5.5□□□□□ -1.53
LINC00560-201ENST00000564593 TRIM38O00635 465 aa5.5□□□□□ -1.53
LINC00560-201ENST00000564593 TLR5O60602 858 aa5.5□□□□□ -1.53
LINC00560-201ENST00000564593 TNFRSF6BO95407 300 aa5.5□□□□□ -1.53
LINC00560-201ENST00000564593 PEX11BO96011 259 aa5.5□□□□□ -1.53
LINC00560-201ENST00000564593 SRGNP10124 158 aa5.5□□□□□ -1.53
LINC00560-201ENST00000564593 MST1P26927 711 aa5.5□□□□□ -1.53
LINC00560-201ENST00000564593 UQCRC1P31930 480 aa5.5□□□□□ -1.53
LINC00560-201ENST00000564593 PTGS2P35354 604 aa5.5□□□□□ -1.53
LINC00560-201ENST00000564593 BCAT1P54687 386 aa5.5□□□□□ -1.53
LINC00560-201ENST00000564593 SP2Q02086 613 aa5.5□□□□□ -1.53
LINC00560-201ENST00000564593 NSUN2Q08J23 767 aaKnown RBP eCLIP5.5□□□□□ -1.53
LINC00560-201ENST00000564593 SF3B3Q15393 1217 aaKnown RBP5.5□□□□□ -1.53
LINC00560-201ENST00000564593 LDHAL6AQ6ZMR3 332 aa5.5□□□□□ -1.53
LINC00560-201ENST00000564593 SMAP1Q8IYB5 467 aaPredicted RBP5.5□□□□□ -1.53
LINC00560-201ENST00000564593 ABRAQ8N0Z2 381 aa5.5□□□□□ -1.53
LINC00560-201ENST00000564593 LPIN2Q92539 896 aa5.5□□□□□ -1.53
LINC00560-201ENST00000564593 HAS1Q92839 578 aa5.5□□□□□ -1.53
LINC00560-201ENST00000564593 HIST1H2AAQ96QV6 131 aa5.5□□□□□ -1.53
LINC00560-201ENST00000564593 ZCWPW1Q9H0M4 648 aa5.5□□□□□ -1.53
LINC00560-201ENST00000564593 NRDE2Q9H7Z3 1164 aa5.5□□□□□ -1.53
LINC00560-201ENST00000564593 ANKFY1Q9P2R3 1169 aa5.5□□□□□ -1.53
LINC00560-201ENST00000564593 TESQ9UGI8 421 aaKnown RBP5.5□□□□□ -1.53
LINC00560-201ENST00000564593 SNX14Q9Y5W7 946 aa5.5□□□□□ -1.53
LINC00560-201ENST00000564593 PDHA1P08559 390 aa5.49□□□□□ -1.53
LINC00560-201ENST00000564593 SRGAP2BP0DMP2 458 aa5.49□□□□□ -1.53
LINC00560-201ENST00000564593 EPHA3P29320 983 aa5.49□□□□□ -1.53
LINC00560-201ENST00000564593 SLC5A2P31639 672 aa5.49□□□□□ -1.53
LINC00560-201ENST00000564593 GATMP50440 423 aa5.49□□□□□ -1.53
LINC00560-201ENST00000564593 RENBPP51606 427 aa5.49□□□□□ -1.53
LINC00560-201ENST00000564593 ITIH3Q06033 890 aa5.49□□□□□ -1.53
LINC00560-201ENST00000564593 SCAPQ12770 1279 aa5.49□□□□□ -1.53
LINC00560-201ENST00000564593 GPS1Q13098 491 aa5.49□□□□□ -1.53
LINC00560-201ENST00000564593 GATAD2AQ86YP4 633 aa5.49□□□□□ -1.53
LINC00560-201ENST00000564593 ARHGEF19Q8IW93 802 aa5.49□□□□□ -1.53
LINC00560-201ENST00000564593 IZUMO1Q8IYV9 350 aa5.49□□□□□ -1.53
LINC00560-201ENST00000564593 TOR1AIP2Q8NFQ8 470 aa5.49□□□□□ -1.53
LINC00560-201ENST00000564593 CACTINQ8WUQ7 758 aaKnown RBP5.49□□□□□ -1.53
LINC00560-201ENST00000564593 TRAPPC12Q8WVT3 735 aa5.49□□□□□ -1.53
LINC00560-201ENST00000564593 GRAMD1AQ96CP6 724 aa5.49□□□□□ -1.53
LINC00560-201ENST00000564593 C17orf80Q9BSJ5 609 aa5.49□□□□□ -1.53
LINC00560-201ENST00000564593 SORBS1Q9BX66 1292 aaKnown RBP5.49□□□□□ -1.53
LINC00560-201ENST00000564593 CASS4Q9NQ75 786 aa5.49□□□□□ -1.53
LINC00560-201ENST00000564593 SLC2A4RGQ9NR83 387 aa5.49□□□□□ -1.53
LINC00560-201ENST00000564593 SCAF8Q9UPN6 1271 aaKnown RBP5.49□□□□□ -1.53
LINC00560-201ENST00000564593 CCDC189A1A4V9 331 aa5.48□□□□□ -1.53
LINC00560-201ENST00000564593 NPHP1O15259 732 aa5.48□□□□□ -1.53
LINC00560-201ENST00000564593 ASNA1O43681 348 aa5.48□□□□□ -1.53
LINC00560-201ENST00000564593 SNX2O60749 519 aa5.48□□□□□ -1.53
LINC00560-201ENST00000564593 GLP2RO95838 553 aa5.48□□□□□ -1.53
LINC00560-201ENST00000564593 ITGA5P08648 1049 aa5.48□□□□□ -1.53
LINC00560-201ENST00000564593 ARP10275 920 aa5.48□□□□□ -1.53
LINC00560-201ENST00000564593 ITGAMP11215 1152 aa5.48□□□□□ -1.53
LINC00560-201ENST00000564593 NTSR1P30989 418 aa5.48□□□□□ -1.53
LINC00560-201ENST00000564593 DGCR2P98153 550 aa5.48□□□□□ -1.53
LINC00560-201ENST00000564593 FOXO1Q12778 655 aa5.48□□□□□ -1.53
LINC00560-201ENST00000564593 BIRC3Q13489 604 aa5.48□□□□□ -1.53
LINC00560-201ENST00000564593 PRKG1Q13976 671 aa5.48□□□□□ -1.53
LINC00560-201ENST00000564593 LY6KQ17RY6 165 aa5.48□□□□□ -1.53
LINC00560-201ENST00000564593 DTX2Q86UW9 622 aa5.48□□□□□ -1.53
LINC00560-201ENST00000564593 LNX2Q8N448 690 aa5.48□□□□□ -1.53
LINC00560-201ENST00000564593 MYCBPAPQ8TBZ2 947 aa5.48□□□□□ -1.53
LINC00560-201ENST00000564593 ABHD5Q8WTS1 349 aa5.48□□□□□ -1.53
LINC00560-201ENST00000564593 LENG9Q96B70 501 aa5.48□□□□□ -1.53
LINC00560-201ENST00000564593 TBC1D20Q96BZ9 403 aa5.48□□□□□ -1.53
LINC00560-201ENST00000564593 ZDHHC12Q96GR4 267 aa5.48□□□□□ -1.53
LINC00560-201ENST00000564593 GPR20Q99678 358 aa5.48□□□□□ -1.53
LINC00560-201ENST00000564593 TMEM120AQ9BXJ8 343 aa5.48□□□□□ -1.53
LINC00560-201ENST00000564593 CA14Q9ULX7 337 aa5.48□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms