RNA–Protein interactions for RNA: ENST00000564468.5

CLK3-216, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 929 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-216ENST00000564468 AFPP02771 609 aaKnown RBP14.19□□□□□ -0.14
CLK3-216ENST00000564468 CKMP06732 381 aa14.19□□□□□ -0.14
CLK3-216ENST00000564468 CCDC130P13994 396 aa14.19□□□□□ -0.14
CLK3-216ENST00000564468 HDCP19113 662 aa14.19□□□□□ -0.14
CLK3-216ENST00000564468 ERCC5P28715 1186 aaPredicted RBP14.19□□□□□ -0.14
CLK3-216ENST00000564468 ID4P47928 161 aa14.19□□□□□ -0.14
CLK3-216ENST00000564468 ORC1Q13415 861 aa14.19□□□□□ -0.14
CLK3-216ENST00000564468 CUL2Q13617 745 aa14.19□□□□□ -0.14
CLK3-216ENST00000564468 CWF19L1Q69YN2 538 aaKnown RBP14.19□□□□□ -0.14
CLK3-216ENST00000564468 ZNF852Q6ZMS4 543 aa14.19□□□□□ -0.14
CLK3-216ENST00000564468 TPRG1Q6ZUI0 275 aa14.19□□□□□ -0.14
CLK3-216ENST00000564468 FAM114A1Q8IWE2 563 aa14.19□□□□□ -0.14
CLK3-216ENST00000564468 C12orf29Q8N999 325 aa14.19□□□□□ -0.14
CLK3-216ENST00000564468 WHAMMQ8TF30 809 aa14.19□□□□□ -0.14
CLK3-216ENST00000564468 TATDN2Q93075 761 aa14.19□□□□□ -0.14
CLK3-216ENST00000564468 FBXO32Q969P5 355 aa14.19□□□□□ -0.14
CLK3-216ENST00000564468 TMEM176AQ96HP8 235 aa14.19□□□□□ -0.14
CLK3-216ENST00000564468 HEXIM2Q96MH2 286 aaKnown RBP14.19□□□□□ -0.14
CLK3-216ENST00000564468 KCNK16Q96T55 309 aa14.19□□□□□ -0.14
CLK3-216ENST00000564468 FBXO44Q9H4M3 255 aa14.19□□□□□ -0.14
CLK3-216ENST00000564468 PNPLA8Q9NP80 782 aa14.19□□□□□ -0.14
CLK3-216ENST00000564468 SIT1Q9Y3P8 196 aa14.19□□□□□ -0.14
CLK3-216ENST00000564468 CACNA1AO00555 2505 aa14.19□□□□□ -0.14
CLK3-216ENST00000564468 LRRN2O75325 713 aa14.18□□□□□ -0.14
CLK3-216ENST00000564468 PRAMEF12O95522 483 aa14.18□□□□□ -0.14
CLK3-216ENST00000564468 MBD3O95983 291 aa14.18□□□□□ -0.14
CLK3-216ENST00000564468 ADORA2BP29275 332 aa14.18□□□□□ -0.14
CLK3-216ENST00000564468 MAGEA9P43362 315 aa14.18□□□□□ -0.14
CLK3-216ENST00000564468 CACNA2D1P54289 1103 aa14.18□□□□□ -0.14
CLK3-216ENST00000564468 SLC8A3P57103 927 aa14.18□□□□□ -0.14
CLK3-216ENST00000564468 USP46P62068 366 aa14.18□□□□□ -0.14
CLK3-216ENST00000564468 IFRD2Q12894 506 aaPredicted RBP14.18□□□□□ -0.14
CLK3-216ENST00000564468 TAF10Q12962 218 aa14.18□□□□□ -0.14
CLK3-216ENST00000564468 ZNF394Q53GI3 561 aa14.18□□□□□ -0.14
CLK3-216ENST00000564468 CC2D1AQ6P1N0 951 aaPredicted RBP14.18□□□□□ -0.14
CLK3-216ENST00000564468 CREBRFQ8IUR6 639 aa14.18□□□□□ -0.14
CLK3-216ENST00000564468 GPIHBP1Q8IV16 184 aa14.18□□□□□ -0.14
CLK3-216ENST00000564468 TMEM105Q8N8V8 129 aa14.18□□□□□ -0.14
CLK3-216ENST00000564468 PJA1Q8NG27 643 aa14.18□□□□□ -0.14
CLK3-216ENST00000564468 USP13Q92995 863 aaPredicted RBP14.18□□□□□ -0.14
CLK3-216ENST00000564468 TWNKQ96RR1 684 aa14.18□□□□□ -0.14
CLK3-216ENST00000564468 DDX23Q9BUQ8 820 aaKnown RBP14.18□□□□□ -0.14
CLK3-216ENST00000564468 C8orf33Q9H7E9 229 aaPredicted RBP14.18□□□□□ -0.14
CLK3-216ENST00000564468 HEBP1Q9NRV9 189 aa14.18□□□□□ -0.14
CLK3-216ENST00000564468 COL4A2P08572 1712 aa14.18□□□□□ -0.14
CLK3-216ENST00000564468 GVINP1Q7Z2Y8 2422 aa14.17□□□□□ -0.14
CLK3-216ENST00000564468 NCANO14594 1321 aa14.17□□□□□ -0.14
CLK3-216ENST00000564468 CACNA1IQ9P0X4 2223 aa14.17□□□□□ -0.14
CLK3-216ENST00000564468 ZNF840PA6NDX5 716 aa14.17□□□□□ -0.14
CLK3-216ENST00000564468 TNFRSF10BO14763 440 aa14.17□□□□□ -0.14
CLK3-216ENST00000564468 ABL1P00519 1130 aa14.17□□□□□ -0.14
CLK3-216ENST00000564468 PRKCSHP14314 528 aaPredicted RBP14.17□□□□□ -0.14
CLK3-216ENST00000564468 TCF3P15923 654 aa14.17□□□□□ -0.14
CLK3-216ENST00000564468 KPNA1P52294 538 aaPredicted RBP14.17□□□□□ -0.14
CLK3-216ENST00000564468 SLC5A3P53794 718 aa14.17□□□□□ -0.14
CLK3-216ENST00000564468 MAP3K7CLP57077 242 aa14.17□□□□□ -0.14
CLK3-216ENST00000564468 LRMPQ12912 555 aa14.17□□□□□ -0.14
CLK3-216ENST00000564468 UBXN2BQ14CS0 331 aa14.17□□□□□ -0.14
CLK3-216ENST00000564468 ARL14EPQ8N8R7 260 aaPredicted RBP14.17□□□□□ -0.14
CLK3-216ENST00000564468 EHBP1Q8NDI1 1231 aa14.17□□□□□ -0.14
CLK3-216ENST00000564468 RSPRY1Q96DX4 576 aa14.17□□□□□ -0.14
CLK3-216ENST00000564468 CNOT6LQ96LI5 555 aaKnown RBP14.17□□□□□ -0.14
CLK3-216ENST00000564468 FAM81BQ96LP2 452 aa14.17□□□□□ -0.14
CLK3-216ENST00000564468 SMOQ99835 787 aa14.17□□□□□ -0.14
CLK3-216ENST00000564468 DUSP16Q9BY84 665 aa14.17□□□□□ -0.14
CLK3-216ENST00000564468 LTB4R2Q9NPC1 389 aa14.17□□□□□ -0.14
CLK3-216ENST00000564468 TMEM30AQ9NV96 361 aa14.17□□□□□ -0.14
CLK3-216ENST00000564468 IL37Q9NZH6 218 aa14.17□□□□□ -0.14
CLK3-216ENST00000564468 GCNT4Q9P109 453 aa14.17□□□□□ -0.14
CLK3-216ENST00000564468 KIAA1257Q9ULG3 409 aa14.17□□□□□ -0.14
CLK3-216ENST00000564468 DCHS1Q96JQ0 3298 aa14.16□□□□□ -0.14
CLK3-216ENST00000564468 FAM92AA1XBS5 289 aa14.16□□□□□ -0.14
CLK3-216ENST00000564468 C2orf78A6NCI8 922 aa14.16□□□□□ -0.14
CLK3-216ENST00000564468 ARNTLO00327 626 aa14.16□□□□□ -0.14
CLK3-216ENST00000564468 PI15O43692 258 aa14.16□□□□□ -0.14
CLK3-216ENST00000564468 MTIF2P46199 727 aaKnown RBP14.16□□□□□ -0.14
CLK3-216ENST00000564468 RAD23BP54727 409 aa14.16□□□□□ -0.14
CLK3-216ENST00000564468 AMPD2Q01433 879 aa14.16□□□□□ -0.14
CLK3-216ENST00000564468 PDGFRLQ15198 375 aa14.16□□□□□ -0.14
CLK3-216ENST00000564468 PPP1R26Q5T8A7 1209 aaPredicted RBP14.16□□□□□ -0.14
CLK3-216ENST00000564468 SNX30Q5VWJ9 437 aa14.16□□□□□ -0.14
CLK3-216ENST00000564468 ARHGAP17Q68EM7 881 aa14.16□□□□□ -0.14
CLK3-216ENST00000564468 CLEC20AQ6ZU45 233 aa14.16□□□□□ -0.14
CLK3-216ENST00000564468 DDX42Q86XP3 938 aaKnown RBP eCLIP14.16□□□□□ -0.14
CLK3-216ENST00000564468 CCDC105Q8IYK2 499 aa14.16□□□□□ -0.14
CLK3-216ENST00000564468 PPM1KQ8N3J5 372 aa14.16□□□□□ -0.14
CLK3-216ENST00000564468 KIAA1958Q8N8K9 716 aa14.16□□□□□ -0.14
CLK3-216ENST00000564468 SLC4A11Q8NBS3 891 aa14.16□□□□□ -0.14
CLK3-216ENST00000564468 ZMIZ2Q8NF64 920 aa14.16□□□□□ -0.14
CLK3-216ENST00000564468 CYP2S1Q96SQ9 504 aa14.16□□□□□ -0.14
CLK3-216ENST00000564468 ARID3AQ99856 593 aa14.16□□□□□ -0.14
CLK3-216ENST00000564468 UBXN6Q9BZV1 441 aa14.16□□□□□ -0.14
CLK3-216ENST00000564468 SMG9Q9H0W8 520 aaKnown RBP14.16□□□□□ -0.14
CLK3-216ENST00000564468 THAP9Q9H5L6 903 aa14.16□□□□□ -0.14
CLK3-216ENST00000564468 TLR8Q9NR97 1041 aaKnown RBP14.16□□□□□ -0.14
CLK3-216ENST00000564468 GKN1Q9NS71 199 aa14.16□□□□□ -0.14
CLK3-216ENST00000564468 ARHGAP26Q9UNA1 814 aa14.16□□□□□ -0.14
CLK3-216ENST00000564468 PIAS3Q9Y6X2 628 aa14.16□□□□□ -0.14
CLK3-216ENST00000564468 FAM170BA6NMN3 283 aa14.15□□□□□ -0.14
CLK3-216ENST00000564468 BEST1O76090 585 aa14.15□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms