RNA–Protein interactions for RNA: ENST00000564399.1

VPS4A-203, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 5

Gene VPS4A, Length 471 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-203ENST00000564399 ZNF217O75362 1048 aa7.84□□□□□ -1.15
VPS4A-203ENST00000564399 PIGRP01833 764 aa7.84□□□□□ -1.15
VPS4A-203ENST00000564399 PRB1P04280 392 aa7.84□□□□□ -1.15
VPS4A-203ENST00000564399 KRT18P05783 430 aaKnown RBP7.84□□□□□ -1.15
VPS4A-203ENST00000564399 ADH5P11766 374 aa7.84□□□□□ -1.15
VPS4A-203ENST00000564399 HOXB2P14652 356 aa7.84□□□□□ -1.15
VPS4A-203ENST00000564399 GNSP15586 552 aa7.84□□□□□ -1.15
VPS4A-203ENST00000564399 GABRG2P18507 467 aa7.84□□□□□ -1.15
VPS4A-203ENST00000564399 ANXA13P27216 316 aa7.84□□□□□ -1.15
VPS4A-203ENST00000564399 PCSK1P29120 753 aa7.84□□□□□ -1.15
VPS4A-203ENST00000564399 EIF2DP41214 584 aaKnown RBP7.84□□□□□ -1.15
VPS4A-203ENST00000564399 PNPLA4P41247 253 aa7.84□□□□□ -1.15
VPS4A-203ENST00000564399 WASP42768 502 aa7.84□□□□□ -1.15
VPS4A-203ENST00000564399 ZXDBP98169 803 aa7.84□□□□□ -1.15
VPS4A-203ENST00000564399 TFAMQ00059 246 aaKnown RBP7.84□□□□□ -1.15
VPS4A-203ENST00000564399 DHX8Q14562 1220 aaKnown RBP7.84□□□□□ -1.15
VPS4A-203ENST00000564399 CCDC142Q17RM4 750 aa7.84□□□□□ -1.15
VPS4A-203ENST00000564399 CFAP221Q4G0U5 840 aa7.84□□□□□ -1.15
VPS4A-203ENST00000564399 SYCP2LQ5T4T6 812 aa7.84□□□□□ -1.15
VPS4A-203ENST00000564399 BTBD8Q5XKL5 378 aa7.84□□□□□ -1.15
VPS4A-203ENST00000564399 SLC39A4Q6P5W5 647 aa7.84□□□□□ -1.15
VPS4A-203ENST00000564399 RHBDF2Q6PJF5 856 aa7.84□□□□□ -1.15
VPS4A-203ENST00000564399 NUDT18Q6ZVK8 323 aa7.84□□□□□ -1.15
VPS4A-203ENST00000564399 TRMT11Q7Z4G4 463 aaKnown RBP7.84□□□□□ -1.15
VPS4A-203ENST00000564399 SLCO6A1Q86UG4 719 aa7.84□□□□□ -1.15
VPS4A-203ENST00000564399 C12orf40Q86WS4 652 aa7.84□□□□□ -1.15
VPS4A-203ENST00000564399 SLC41A1Q8IVJ1 513 aa7.84□□□□□ -1.15
VPS4A-203ENST00000564399 TMEM86AQ8N2M4 240 aa7.84□□□□□ -1.15
VPS4A-203ENST00000564399 NAT16Q8N8M0 369 aa7.84□□□□□ -1.15
VPS4A-203ENST00000564399 CFAP97Q9P2B7 532 aa7.84□□□□□ -1.15
VPS4A-203ENST00000564399 AGO2Q9UKV8 859 aaKnown RBP7.84□□□□□ -1.15
VPS4A-203ENST00000564399 L1RE1Q9UN81 338 aa7.84□□□□□ -1.15
VPS4A-203ENST00000564399 AGAP1Q9UPQ3 857 aa7.84□□□□□ -1.15
VPS4A-203ENST00000564399 CPQQ9Y646 472 aa7.84□□□□□ -1.15
VPS4A-203ENST00000564399 ZNF462Q96JM2 2506 aa7.84□□□□□ -1.15
VPS4A-203ENST00000564399 LOC400499M0QZD8 3231 aa7.84□□□□□ -1.16
VPS4A-203ENST00000564399 WDFY3Q8IZQ1 3526 aa7.83□□□□□ -1.16
VPS4A-203ENST00000564399 A0A0A0MRY4 1105 aa7.83□□□□□ -1.16
VPS4A-203ENST00000564399 TRABD2BA6NFA1 517 aa7.83□□□□□ -1.16
VPS4A-203ENST00000564399 GOLGA8CPA6NN73 597 aa7.83□□□□□ -1.16
VPS4A-203ENST00000564399 TISP43B9A030 160 aa7.83□□□□□ -1.16
VPS4A-203ENST00000564399 ANKRD63C9JTQ0 380 aa7.83□□□□□ -1.16
VPS4A-203ENST00000564399 LAD1O00515 517 aa7.83□□□□□ -1.16
VPS4A-203ENST00000564399 TRAK2O60296 914 aa7.83□□□□□ -1.16
VPS4A-203ENST00000564399 GJB3O75712 270 aa7.83□□□□□ -1.16
VPS4A-203ENST00000564399 IL18RAPO95256 599 aa7.83□□□□□ -1.16
VPS4A-203ENST00000564399 MBL2P11226 248 aaPredicted RBP7.83□□□□□ -1.16
VPS4A-203ENST00000564399 CHRM1P11229 460 aaPredicted RBP7.83□□□□□ -1.16
VPS4A-203ENST00000564399 PFKLP17858 780 aa7.83□□□□□ -1.16
VPS4A-203ENST00000564399 SCP2P22307 547 aa7.83□□□□□ -1.16
VPS4A-203ENST00000564399 MAOBP27338 520 aa7.83□□□□□ -1.16
VPS4A-203ENST00000564399 POLR2BP30876 1174 aaKnown RBP7.83□□□□□ -1.16
VPS4A-203ENST00000564399 NTSR1P30989 418 aa7.83□□□□□ -1.16
VPS4A-203ENST00000564399 GRIK1P39086 918 aa7.83□□□□□ -1.16
VPS4A-203ENST00000564399 PRPHP41219 470 aa7.83□□□□□ -1.16
VPS4A-203ENST00000564399 MAGEA11P43364 429 aa7.83□□□□□ -1.16
VPS4A-203ENST00000564399 LHX1P48742 406 aa7.83□□□□□ -1.16
VPS4A-203ENST00000564399 NEK4P51957 841 aa7.83□□□□□ -1.16
VPS4A-203ENST00000564399 SLC12A3P55017 1021 aa7.83□□□□□ -1.16
VPS4A-203ENST00000564399 SLC7A9P82251 487 aa7.83□□□□□ -1.16
VPS4A-203ENST00000564399 GAD2Q05329 585 aa7.83□□□□□ -1.16
VPS4A-203ENST00000564399 NUMA1Q14980 2115 aa7.83□□□□□ -1.16
VPS4A-203ENST00000564399 IL17AQ16552 155 aa7.83□□□□□ -1.16
VPS4A-203ENST00000564399 PREPLQ4J6C6 727 aaPredicted RBP7.83□□□□□ -1.16
VPS4A-203ENST00000564399 ARSHQ5FYA8 562 aa7.83□□□□□ -1.16
VPS4A-203ENST00000564399 WDR45BQ5MNZ6 344 aa7.83□□□□□ -1.16
VPS4A-203ENST00000564399 LY6G5CQ5SRR4 150 aa7.83□□□□□ -1.16
VPS4A-203ENST00000564399 C10orf76Q5T2E6 689 aa7.83□□□□□ -1.16
VPS4A-203ENST00000564399 SLFN12LQ6IEE8 588 aa7.83□□□□□ -1.16
VPS4A-203ENST00000564399 SDE2Q6IQ49 451 aa7.83□□□□□ -1.16
VPS4A-203ENST00000564399 C4orf50Q6ZRC1 276 aa7.83□□□□□ -1.16
VPS4A-203ENST00000564399 DENND5BQ6ZUT9 1274 aa7.83□□□□□ -1.16
VPS4A-203ENST00000564399 GPBP1Q86WP2 473 aa7.83□□□□□ -1.16
VPS4A-203ENST00000564399 FAM184AQ8NB25 1140 aa7.83□□□□□ -1.16
VPS4A-203ENST00000564399 FBXO18Q8NFZ0 1043 aa7.83□□□□□ -1.16
VPS4A-203ENST00000564399 SLC39A7Q92504 469 aa7.83□□□□□ -1.16
VPS4A-203ENST00000564399 FOXJ1Q92949 421 aa7.83□□□□□ -1.16
VPS4A-203ENST00000564399 CRELD1Q96HD1 420 aa7.83□□□□□ -1.16
VPS4A-203ENST00000564399 FUBP3Q96I24 572 aaKnown RBP eCLIP7.83□□□□□ -1.16
VPS4A-203ENST00000564399 DCBLD2Q96PD2 775 aa7.83□□□□□ -1.16
VPS4A-203ENST00000564399 UBL7Q96S82 380 aaPredicted RBP7.83□□□□□ -1.16
VPS4A-203ENST00000564399 PKMYT1Q99640 499 aa7.83□□□□□ -1.16
VPS4A-203ENST00000564399 REEP2Q9BRK0 252 aa7.83□□□□□ -1.16
VPS4A-203ENST00000564399 RNF38Q9H0F5 515 aa7.83□□□□□ -1.16
VPS4A-203ENST00000564399 PRDM16Q9HAZ2 1276 aa7.83□□□□□ -1.16
VPS4A-203ENST00000564399 PARVGQ9HBI0 331 aa7.83□□□□□ -1.16
VPS4A-203ENST00000564399 EHD2Q9NZN4 543 aa7.83□□□□□ -1.16
VPS4A-203ENST00000564399 TBC1D14Q9P2M4 693 aa7.83□□□□□ -1.16
VPS4A-203ENST00000564399 DEC1Q9P2X7 70 aa7.83□□□□□ -1.16
VPS4A-203ENST00000564399 MAGEC2Q9UBF1 373 aaPredicted RBP7.83□□□□□ -1.16
VPS4A-203ENST00000564399 ODF2LQ9ULJ1 636 aa7.83□□□□□ -1.16
VPS4A-203ENST00000564399 SNX9Q9Y5X1 595 aa7.83□□□□□ -1.16
VPS4A-203ENST00000564399 COL6A6A6NMZ7 2263 aa7.83□□□□□ -1.16
VPS4A-203ENST00000564399 LAMA5O15230 3695 aa7.82□□□□□ -1.16
VPS4A-203ENST00000564399 ZNF840PA6NDX5 716 aa7.82□□□□□ -1.16
VPS4A-203ENST00000564399 MEI4A8MW99 385 aa7.82□□□□□ -1.16
VPS4A-203ENST00000564399 HCRTO43612 131 aa7.82□□□□□ -1.16
VPS4A-203ENST00000564399 ATP2C2O75185 946 aa7.82□□□□□ -1.16
VPS4A-203ENST00000564399 TBCAO75347 108 aaKnown RBP7.82□□□□□ -1.16
VPS4A-203ENST00000564399 TULP3O75386 442 aa7.82□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 40.6 ms