RNA–Protein interactions for RNA: ENST00000563874.5

CLN3-210, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 3,081 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-210ENST00000563874 PSMG1O95456 288 aa13.79□□□□□ -0.2
CLN3-210ENST00000563874 APBA3O96018 575 aa13.79□□□□□ -0.2
CLN3-210ENST00000563874 ENO1P06733 434 aaKnown RBP13.79□□□□□ -0.2
CLN3-210ENST00000563874 SUPT20HL2P0C7V6 817 aa13.79□□□□□ -0.2
CLN3-210ENST00000563874 AMPD1P23109 780 aa13.79□□□□□ -0.2
CLN3-210ENST00000563874 NAMPTP43490 491 aa13.79□□□□□ -0.2
CLN3-210ENST00000563874 SERPINB4P48594 390 aa13.79□□□□□ -0.2
CLN3-210ENST00000563874 FSTL1Q12841 308 aa13.79□□□□□ -0.2
CLN3-210ENST00000563874 TRPC3Q13507 836 aa13.79□□□□□ -0.2
CLN3-210ENST00000563874 SUPT20HL1Q3ZLR7 823 aa13.79□□□□□ -0.2
CLN3-210ENST00000563874 RAB6CQ53S08 254 aa13.79□□□□□ -0.2
CLN3-210ENST00000563874 PPP1R2P3Q6NXS1 205 aa13.79□□□□□ -0.2
CLN3-210ENST00000563874 LRRC74BQ6ZQY2 392 aa13.79□□□□□ -0.2
CLN3-210ENST00000563874 PPM1NQ8N819 430 aa13.79□□□□□ -0.2
CLN3-210ENST00000563874 SLC13A1Q9BZW2 595 aa13.79□□□□□ -0.2
CLN3-210ENST00000563874 RAB6CQ9H0N0 254 aa13.79□□□□□ -0.2
CLN3-210ENST00000563874 POLIQ9UNA4 740 aa13.79□□□□□ -0.2
CLN3-210ENST00000563874 MTO1Q9Y2Z2 717 aaKnown RBP13.79□□□□□ -0.2
CLN3-210ENST00000563874 HNRNPCL1O60812 293 aaKnown RBP13.79□□□□□ -0.2
CLN3-210ENST00000563874 EGFRP00533 1210 aa13.79□□□□□ -0.2
CLN3-210ENST00000563874 KRT7P08729 469 aa13.79□□□□□ -0.2
CLN3-210ENST00000563874 PGM1P36871 562 aa13.79□□□□□ -0.2
CLN3-210ENST00000563874 NEK3P51956 506 aa13.79□□□□□ -0.2
CLN3-210ENST00000563874 CDH8P55286 799 aa13.79□□□□□ -0.2
CLN3-210ENST00000563874 SH3PXD2AQ5TCZ1 1133 aa13.79□□□□□ -0.2
CLN3-210ENST00000563874 DPH6Q7L8W6 267 aa13.79□□□□□ -0.2
CLN3-210ENST00000563874 NIPA2Q8N8Q9 360 aa13.79□□□□□ -0.2
CLN3-210ENST00000563874 FAM136AQ96C01 138 aa13.79□□□□□ -0.2
CLN3-210ENST00000563874 CLPTM1LQ96KA5 538 aa13.79□□□□□ -0.2
CLN3-210ENST00000563874 FAM161BQ96MY7 647 aa13.79□□□□□ -0.2
CLN3-210ENST00000563874 SRPK1Q96SB4 655 aaKnown RBP13.79□□□□□ -0.2
CLN3-210ENST00000563874 CPXM1Q96SM3 734 aa13.79□□□□□ -0.2
CLN3-210ENST00000563874 IQCGQ9H095 443 aaKnown RBP13.79□□□□□ -0.2
CLN3-210ENST00000563874 ZNF302Q9NR11 478 aa13.79□□□□□ -0.2
CLN3-210ENST00000563874 FETUBQ9UGM5 382 aa13.79□□□□□ -0.2
CLN3-210ENST00000563874 TRIM49D1C9J1S8 452 aa13.78□□□□□ -0.2
CLN3-210ENST00000563874 CYB561D2O14569 222 aa13.78□□□□□ -0.2
CLN3-210ENST00000563874 MCF2LO15068 1137 aa13.78□□□□□ -0.2
CLN3-210ENST00000563874 OATP04181 439 aa13.78□□□□□ -0.2
CLN3-210ENST00000563874 SP100P23497 879 aaPredicted RBP13.78□□□□□ -0.2
CLN3-210ENST00000563874 KDSRQ06136 332 aa13.78□□□□□ -0.2
CLN3-210ENST00000563874 SLC34A1Q06495 639 aa13.78□□□□□ -0.2
CLN3-210ENST00000563874 BMPR2Q13873 1038 aa13.78□□□□□ -0.2
CLN3-210ENST00000563874 CAPSQ13938 189 aa13.78□□□□□ -0.2
CLN3-210ENST00000563874 HADHQ16836 314 aaKnown RBP13.78□□□□□ -0.2
CLN3-210ENST00000563874 DARS2Q6PI48 645 aaKnown RBP13.78□□□□□ -0.2
CLN3-210ENST00000563874 POLNQ7Z5Q5 900 aa13.78□□□□□ -0.2
CLN3-210ENST00000563874 PHC3Q8NDX5 983 aa13.78□□□□□ -0.2
CLN3-210ENST00000563874 TSC22D3Q99576 134 aa13.78□□□□□ -0.2
CLN3-210ENST00000563874 TRIM56Q9BRZ2 755 aaKnown RBP13.78□□□□□ -0.2
CLN3-210ENST00000563874 DHX33Q9H6R0 707 aaKnown RBP13.78□□□□□ -0.2
CLN3-210ENST00000563874 PCNTO95613 3336 aa13.78□□□□□ -0.2
CLN3-210ENST00000563874 B2RBV5 119 aa13.78□□□□□ -0.2
CLN3-210ENST00000563874 COPEO14579 308 aa13.78□□□□□ -0.2
CLN3-210ENST00000563874 PLSCR1O15162 318 aa13.78□□□□□ -0.2
CLN3-210ENST00000563874 DHRS4L1P0CG22 281 aa13.78□□□□□ -0.2
CLN3-210ENST00000563874 EIF4BP23588 611 aaKnown RBP13.78□□□□□ -0.2
CLN3-210ENST00000563874 MIPP30301 263 aa13.78□□□□□ -0.2
CLN3-210ENST00000563874 ZNF699Q32M78 642 aa13.78□□□□□ -0.2
CLN3-210ENST00000563874 DNAJC14Q6Y2X3 702 aaPredicted RBP13.78□□□□□ -0.2
CLN3-210ENST00000563874 TREML1Q86YW5 311 aa13.78□□□□□ -0.2
CLN3-210ENST00000563874 TTC13Q8NBP0 860 aa13.78□□□□□ -0.2
CLN3-210ENST00000563874 TEKT4Q8WW24 435 aa13.78□□□□□ -0.2
CLN3-210ENST00000563874 SLC44A1Q8WWI5 657 aa13.78□□□□□ -0.2
CLN3-210ENST00000563874 RPL26L1Q9UNX3 145 aaKnown RBP13.78□□□□□ -0.2
CLN3-210ENST00000563874 KIAA1217Q5T5P2 1943 aa13.78□□□□□ -0.2
CLN3-210ENST00000563874 CXorf49A8MYA2 514 aaPredicted RBP13.77□□□□□ -0.2
CLN3-210ENST00000563874 UGT1A9O60656 530 aa13.77□□□□□ -0.2
CLN3-210ENST00000563874 KRT19P08727 400 aa13.77□□□□□ -0.2
CLN3-210ENST00000563874 SRGAP2CP0DJJ0 459 aa13.77□□□□□ -0.2
CLN3-210ENST00000563874 ARL2P36404 184 aa13.77□□□□□ -0.2
CLN3-210ENST00000563874 TAP1Q03518 808 aa13.77□□□□□ -0.2
CLN3-210ENST00000563874 ZC3H12AQ5D1E8 599 aaKnown RBP13.77□□□□□ -0.2
CLN3-210ENST00000563874 C1orf228Q6PIY5 440 aa13.77□□□□□ -0.2
CLN3-210ENST00000563874 ARID3BQ8IVW6 561 aaPredicted RBP13.77□□□□□ -0.2
CLN3-210ENST00000563874 BRSK2Q8IWQ3 736 aa13.77□□□□□ -0.2
CLN3-210ENST00000563874 KBTBD2Q8IY47 623 aa13.77□□□□□ -0.2
CLN3-210ENST00000563874 THNSL1Q8IYQ7 743 aa13.77□□□□□ -0.2
CLN3-210ENST00000563874 SH3TC2Q8TF17 1288 aa13.77□□□□□ -0.2
CLN3-210ENST00000563874 UGT1A7Q9HAW7 530 aa13.77□□□□□ -0.2
CLN3-210ENST00000563874 UGT1A10Q9HAW8 530 aa13.77□□□□□ -0.2
CLN3-210ENST00000563874 UGT1A8Q9HAW9 530 aa13.77□□□□□ -0.2
CLN3-210ENST00000563874 ARHGEF4Q9NR80 690 aa13.77□□□□□ -0.2
CLN3-210ENST00000563874 PPARGC1AQ9UBK2 798 aaKnown RBP13.77□□□□□ -0.2
CLN3-210ENST00000563874 NDC80O14777 642 aa13.77□□□□□ -0.21
CLN3-210ENST00000563874 PIGRP01833 764 aa13.77□□□□□ -0.21
CLN3-210ENST00000563874 RARBP10826 455 aa13.77□□□□□ -0.21
CLN3-210ENST00000563874 GNAT1P11488 350 aa13.77□□□□□ -0.21
CLN3-210ENST00000563874 YY1P25490 414 aa13.77□□□□□ -0.21
CLN3-210ENST00000563874 FKBP1CQ5VVH2 108 aa13.77□□□□□ -0.21
CLN3-210ENST00000563874 CES4AQ5XG92 561 aa13.77□□□□□ -0.21
CLN3-210ENST00000563874 SH2D5Q6ZV89 423 aa13.77□□□□□ -0.21
CLN3-210ENST00000563874 FAF2Q96CS3 445 aa13.77□□□□□ -0.21
CLN3-210ENST00000563874 ACAP3Q96P50 834 aa13.77□□□□□ -0.21
CLN3-210ENST00000563874 WDR81Q562E7 1941 aa13.77□□□□□ -0.21
CLN3-210ENST00000563874 APOC4-APOC2K7ER74 178 aa13.77□□□□□ -0.21
CLN3-210ENST00000563874 DNAJC6O75061 913 aa13.77□□□□□ -0.21
CLN3-210ENST00000563874 APOC2P02655 101 aa13.77□□□□□ -0.21
CLN3-210ENST00000563874 ERBB2P04626 1255 aa13.77□□□□□ -0.21
CLN3-210ENST00000563874 ASPAP45381 313 aa13.77□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms