RNA–Protein interactions for RNA: ENST00000563400.1

VPS35P1-201, Transcript of VPS35, retromer complex component pseudogene 1, humanhuman

BASIC

Gene VPS35P1, Length 1,518 nt, Biotype unprocessed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35P1-201ENST00000563400 IYDQ6PHW0 289 aa5.63□□□□□ -1.51
VPS35P1-201ENST00000563400 CRTC1Q6UUV9 634 aa5.63□□□□□ -1.51
VPS35P1-201ENST00000563400 PIWIL3Q7Z3Z3 882 aaKnown RBP5.63□□□□□ -1.51
VPS35P1-201ENST00000563400 PPP1R3BQ86XI6 285 aa5.63□□□□□ -1.51
VPS35P1-201ENST00000563400 RBM12BQ8IXT5 1001 aaKnown RBP5.63□□□□□ -1.51
VPS35P1-201ENST00000563400 TBC1D21Q8IYX1 336 aa5.63□□□□□ -1.51
VPS35P1-201ENST00000563400 ZBTB8BQ8NAP8 495 aaPredicted RBP5.63□□□□□ -1.51
VPS35P1-201ENST00000563400 GSDMBQ8TAX9 411 aa5.63□□□□□ -1.51
VPS35P1-201ENST00000563400 CUL5Q93034 780 aa5.63□□□□□ -1.51
VPS35P1-201ENST00000563400 FATE1Q969F0 183 aa5.63□□□□□ -1.51
VPS35P1-201ENST00000563400 CABS1Q96KC9 395 aa5.63□□□□□ -1.51
VPS35P1-201ENST00000563400 SAMD11Q96NU1 681 aa5.63□□□□□ -1.51
VPS35P1-201ENST00000563400 MOGAT1Q96PD6 335 aa5.63□□□□□ -1.51
VPS35P1-201ENST00000563400 TMEM8AQ9HCN3 771 aa5.63□□□□□ -1.51
VPS35P1-201ENST00000563400 EPB41L4AQ9HCS5 686 aaPredicted RBP5.63□□□□□ -1.51
VPS35P1-201ENST00000563400 PDE7BQ9NP56 450 aa5.63□□□□□ -1.51
VPS35P1-201ENST00000563400 KCTD5Q9NXV2 234 aa5.63□□□□□ -1.51
VPS35P1-201ENST00000563400 CHORDC1Q9UHD1 332 aaPredicted RBP5.63□□□□□ -1.51
VPS35P1-201ENST00000563400 HSF4Q9ULV5 492 aa5.63□□□□□ -1.51
VPS35P1-201ENST00000563400 AP4E1Q9UPM8 1137 aa5.63□□□□□ -1.51
VPS35P1-201ENST00000563400 SMC3Q9UQE7 1217 aa5.63□□□□□ -1.51
VPS35P1-201ENST00000563400 TIMM13Q9Y5L4 95 aaPredicted RBP5.63□□□□□ -1.51
VPS35P1-201ENST00000563400 MYPNQ86TC9 1320 aa5.62□□□□□ -1.51
VPS35P1-201ENST00000563400 FAM208AQ9UK61 1670 aaKnown RBP5.62□□□□□ -1.51
VPS35P1-201ENST00000563400 KIF20BQ96Q89 1820 aa5.62□□□□□ -1.51
VPS35P1-201ENST00000563400 TRIM43BA6NCK2 446 aa5.62□□□□□ -1.51
VPS35P1-201ENST00000563400 CLCA1A8K7I4 914 aa5.62□□□□□ -1.51
VPS35P1-201ENST00000563400 BOLA2-SMG1P6H3BVE0 249 aa5.62□□□□□ -1.51
VPS35P1-201ENST00000563400 PES1O00541 588 aaKnown RBP5.62□□□□□ -1.51
VPS35P1-201ENST00000563400 ADAM20O43506 726 aa5.62□□□□□ -1.51
VPS35P1-201ENST00000563400 STAM2O75886 525 aa5.62□□□□□ -1.51
VPS35P1-201ENST00000563400 TSPAN9O75954 239 aa5.62□□□□□ -1.51
VPS35P1-201ENST00000563400 CHGBP05060 677 aa5.62□□□□□ -1.51
VPS35P1-201ENST00000563400 PFKMP08237 780 aa5.62□□□□□ -1.51
VPS35P1-201ENST00000563400 LAMP2P13473 410 aa5.62□□□□□ -1.51
VPS35P1-201ENST00000563400 SYN1P17600 705 aa5.62□□□□□ -1.51
VPS35P1-201ENST00000563400 GAP43P17677 238 aa5.62□□□□□ -1.51
VPS35P1-201ENST00000563400 IL4RP24394 825 aa5.62□□□□□ -1.51
VPS35P1-201ENST00000563400 FPR2P25090 351 aa5.62□□□□□ -1.51
VPS35P1-201ENST00000563400 PRKAR2BP31323 418 aa5.62□□□□□ -1.51
VPS35P1-201ENST00000563400 GGT5P36269 586 aa5.62□□□□□ -1.51
VPS35P1-201ENST00000563400 EIF2DP41214 584 aaKnown RBP5.62□□□□□ -1.51
VPS35P1-201ENST00000563400 AKAP17AQ02040 695 aaKnown RBP5.62□□□□□ -1.51
VPS35P1-201ENST00000563400 KHDRBS1Q07666 443 aaKnown RBP eCLIP5.62□□□□□ -1.51
VPS35P1-201ENST00000563400 AIMP1Q12904 312 aaKnown RBP5.62□□□□□ -1.51
VPS35P1-201ENST00000563400 NMIQ13287 307 aaPredicted RBP5.62□□□□□ -1.51
VPS35P1-201ENST00000563400 NFE2L1Q14494 772 aa5.62□□□□□ -1.51
VPS35P1-201ENST00000563400 NOMO1Q15155 1222 aa5.62□□□□□ -1.51
VPS35P1-201ENST00000563400 TAF7Q15545 349 aaPredicted RBP5.62□□□□□ -1.51
VPS35P1-201ENST00000563400 KYNUQ16719 465 aa5.62□□□□□ -1.51
VPS35P1-201ENST00000563400 ANKDD1AQ495B1 522 aa5.62□□□□□ -1.51
VPS35P1-201ENST00000563400 MUM1L1Q5H9M0 696 aa5.62□□□□□ -1.51
VPS35P1-201ENST00000563400 FIGNQ5HY92 759 aa5.62□□□□□ -1.51
VPS35P1-201ENST00000563400 EEF1DP3Q658K8 133 aa5.62□□□□□ -1.51
VPS35P1-201ENST00000563400 MCTP2Q6DN12 878 aa5.62□□□□□ -1.51
VPS35P1-201ENST00000563400 MFSD5Q6N075 450 aa5.62□□□□□ -1.51
VPS35P1-201ENST00000563400 INTS5Q6P9B9 1019 aaKnown RBP5.62□□□□□ -1.51
VPS35P1-201ENST00000563400 SLC2A7Q6PXP3 512 aa5.62□□□□□ -1.51
VPS35P1-201ENST00000563400 MICU3Q86XE3 530 aa5.62□□□□□ -1.51
VPS35P1-201ENST00000563400 ADSSL1Q8N142 457 aa5.62□□□□□ -1.51
VPS35P1-201ENST00000563400 SCML4Q8N228 414 aa5.62□□□□□ -1.51
VPS35P1-201ENST00000563400 PIGOQ8TEQ8 1089 aa5.62□□□□□ -1.51
VPS35P1-201ENST00000563400 TBC1D5Q92609 795 aa5.62□□□□□ -1.51
VPS35P1-201ENST00000563400 PTP4A1Q93096 173 aa5.62□□□□□ -1.51
VPS35P1-201ENST00000563400 TRIM43Q96BQ3 446 aaPredicted RBP5.62□□□□□ -1.51
VPS35P1-201ENST00000563400 ADI1Q9BV57 179 aa5.62□□□□□ -1.51
VPS35P1-201ENST00000563400 TEX13BQ9BXU2 312 aa5.62□□□□□ -1.51
VPS35P1-201ENST00000563400 OSBPL6Q9BZF3 934 aa5.62□□□□□ -1.51
VPS35P1-201ENST00000563400 ANKRD2Q9GZV1 360 aa5.62□□□□□ -1.51
VPS35P1-201ENST00000563400 TWSG1Q9GZX9 223 aa5.62□□□□□ -1.51
VPS35P1-201ENST00000563400 RABEP2Q9H5N1 569 aa5.62□□□□□ -1.51
VPS35P1-201ENST00000563400 CHODLQ9H9P2 273 aa5.62□□□□□ -1.51
VPS35P1-201ENST00000563400 LIN28AQ9H9Z2 209 aaKnown RBP5.62□□□□□ -1.51
VPS35P1-201ENST00000563400 SMURF2Q9HAU4 748 aa5.62□□□□□ -1.51
VPS35P1-201ENST00000563400 PCMTD2Q9NV79 361 aa5.62□□□□□ -1.51
VPS35P1-201ENST00000563400 NIPSNAP3AQ9UFN0 247 aaPredicted RBP5.62□□□□□ -1.51
VPS35P1-201ENST00000563400 AJAP1Q9UKB5 411 aaPredicted RBP5.62□□□□□ -1.51
VPS35P1-201ENST00000563400 CDY2AQ9Y6F7 541 aa5.62□□□□□ -1.51
VPS35P1-201ENST00000563400 CNTNAP4Q9C0A0 1308 aa5.62□□□□□ -1.51
VPS35P1-201ENST00000563400 BCL9O00512 1426 aa5.61□□□□□ -1.51
VPS35P1-201ENST00000563400 CCDC78A2IDD5 438 aa5.61□□□□□ -1.51
VPS35P1-201ENST00000563400 TMEM110-MUSTN1A8MSY1 372 aa5.61□□□□□ -1.51
VPS35P1-201ENST00000563400 DNPH1O43598 174 aa5.61□□□□□ -1.51
VPS35P1-201ENST00000563400 TSPAN3O60637 253 aa5.61□□□□□ -1.51
VPS35P1-201ENST00000563400 SOCS5O75159 536 aa5.61□□□□□ -1.51
VPS35P1-201ENST00000563400 USP2O75604 605 aaPredicted RBP5.61□□□□□ -1.51
VPS35P1-201ENST00000563400 AFPP02771 609 aaKnown RBP5.61□□□□□ -1.51
VPS35P1-201ENST00000563400 SNRNP70P08621 437 aaKnown RBP5.61□□□□□ -1.51
VPS35P1-201ENST00000563400 QDPRP09417 244 aa5.61□□□□□ -1.51
VPS35P1-201ENST00000563400 GSTM1P09488 218 aa5.61□□□□□ -1.51
VPS35P1-201ENST00000563400 SRGAP2BP0DMP2 458 aa5.61□□□□□ -1.51
VPS35P1-201ENST00000563400 ADH5P11766 374 aa5.61□□□□□ -1.51
VPS35P1-201ENST00000563400 ALADP13716 330 aa5.61□□□□□ -1.51
VPS35P1-201ENST00000563400 DRD2P14416 443 aa5.61□□□□□ -1.51
VPS35P1-201ENST00000563400 IL1R1P14778 569 aa5.61□□□□□ -1.51
VPS35P1-201ENST00000563400 CIITAP33076 1130 aa5.61□□□□□ -1.51
VPS35P1-201ENST00000563400 ARFIP2P53365 341 aa5.61□□□□□ -1.51
VPS35P1-201ENST00000563400 RIPK4P57078 832 aa5.61□□□□□ -1.51
VPS35P1-201ENST00000563400 GNAI1P63096 354 aa5.61□□□□□ -1.51
VPS35P1-201ENST00000563400 SPIRE1Q08AE8 756 aa5.61□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms