RNA–Protein interactions for RNA: ENST00000559834.1

HDDC3-204, Transcript of HD domain containing 3, humanhuman

TSL 2

Gene HDDC3, Length 1,076 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-204ENST00000559834 USP28Q96RU2 1077 aa9.77□□□□□ -0.85
HDDC3-204ENST00000559834 FGFBP2Q9BYJ0 223 aa9.77□□□□□ -0.85
HDDC3-204ENST00000559834 ELOVL4Q9GZR5 314 aa9.77□□□□□ -0.85
HDDC3-204ENST00000559834 POLMQ9NP87 494 aaPredicted RBP9.77□□□□□ -0.85
HDDC3-204ENST00000559834 KBTBD4Q9NVX7 518 aa9.77□□□□□ -0.85
HDDC3-204ENST00000559834 SMPD4Q9NXE4 827 aa9.77□□□□□ -0.85
HDDC3-204ENST00000559834 CPQQ9Y646 472 aa9.77□□□□□ -0.85
HDDC3-204ENST00000559834 A0A087X0B3 334 aa9.76□□□□□ -0.85
HDDC3-204ENST00000559834 E2F8A0AVK6 867 aa9.76□□□□□ -0.85
HDDC3-204ENST00000559834 A8MXQ7 604 aa9.76□□□□□ -0.85
HDDC3-204ENST00000559834 ZBTB24O43167 697 aaPredicted RBP9.76□□□□□ -0.85
HDDC3-204ENST00000559834 PHACTR2O75167 634 aa9.76□□□□□ -0.85
HDDC3-204ENST00000559834 RTN3O95197 1032 aaPredicted RBP9.76□□□□□ -0.85
HDDC3-204ENST00000559834 KAT7O95251 611 aa9.76□□□□□ -0.85
HDDC3-204ENST00000559834 OLFM2O95897 454 aa9.76□□□□□ -0.85
HDDC3-204ENST00000559834 CYP17A1P05093 508 aa9.76□□□□□ -0.85
HDDC3-204ENST00000559834 CEACAM1P13688 526 aa9.76□□□□□ -0.85
HDDC3-204ENST00000559834 ATICP31939 592 aa9.76□□□□□ -0.85
HDDC3-204ENST00000559834 GRIA2P42262 883 aa9.76□□□□□ -0.85
HDDC3-204ENST00000559834 DPP6P42658 865 aa9.76□□□□□ -0.85
HDDC3-204ENST00000559834 TNFRSF4P43489 277 aa9.76□□□□□ -0.85
HDDC3-204ENST00000559834 NASPP49321 788 aaPredicted RBP9.76□□□□□ -0.85
HDDC3-204ENST00000559834 DHPSP49366 369 aaPredicted RBP9.76□□□□□ -0.85
HDDC3-204ENST00000559834 ASIC1P78348 528 aa9.76□□□□□ -0.85
HDDC3-204ENST00000559834 ZXDBP98169 803 aa9.76□□□□□ -0.85
HDDC3-204ENST00000559834 LMAN2Q12907 356 aa9.76□□□□□ -0.85
HDDC3-204ENST00000559834 PSMD6Q15008 389 aa9.76□□□□□ -0.85
HDDC3-204ENST00000559834 SPDYCQ5MJ68 293 aa9.76□□□□□ -0.85
HDDC3-204ENST00000559834 BTBD8Q5XKL5 378 aa9.76□□□□□ -0.85
HDDC3-204ENST00000559834 RHBDF2Q6PJF5 856 aa9.76□□□□□ -0.85
HDDC3-204ENST00000559834 CYP2U1Q7Z449 544 aa9.76□□□□□ -0.85
HDDC3-204ENST00000559834 NUP93Q8N1F7 819 aa9.76□□□□□ -0.85
HDDC3-204ENST00000559834 XXYLT1Q8NBI6 393 aa9.76□□□□□ -0.85
HDDC3-204ENST00000559834 MDGA1Q8NFP4 955 aa9.76□□□□□ -0.85
HDDC3-204ENST00000559834 KCNV2Q8TDN2 545 aa9.76□□□□□ -0.85
HDDC3-204ENST00000559834 WHAMMQ8TF30 809 aa9.76□□□□□ -0.85
HDDC3-204ENST00000559834 OVCA2Q8WZ82 227 aa9.76□□□□□ -0.85
HDDC3-204ENST00000559834 SYAP1Q96A49 352 aaPredicted RBP9.76□□□□□ -0.85
HDDC3-204ENST00000559834 CCDC127Q96BQ5 260 aa9.76□□□□□ -0.85
HDDC3-204ENST00000559834 SPACA7Q96KW9 195 aa9.76□□□□□ -0.85
HDDC3-204ENST00000559834 ZNF396Q96N95 335 aaPredicted RBP9.76□□□□□ -0.85
HDDC3-204ENST00000559834 MRPL45Q9BRJ2 306 aaKnown RBP9.76□□□□□ -0.85
HDDC3-204ENST00000559834 TPSD1Q9BZJ3 242 aa9.76□□□□□ -0.85
HDDC3-204ENST00000559834 TRIM9Q9C026 710 aa9.76□□□□□ -0.85
HDDC3-204ENST00000559834 TMEM9BQ9NQ34 198 aa9.76□□□□□ -0.85
HDDC3-204ENST00000559834 AGPAT3Q9NRZ7 376 aa9.76□□□□□ -0.85
HDDC3-204ENST00000559834 CFAP97Q9P2B7 532 aa9.76□□□□□ -0.85
HDDC3-204ENST00000559834 CGNQ9P2M7 1197 aaKnown RBP9.76□□□□□ -0.85
HDDC3-204ENST00000559834 CIZ1Q9ULV3 898 aaPredicted RBP9.76□□□□□ -0.85
HDDC3-204ENST00000559834 ATP8B3O60423 1300 aa9.76□□□□□ -0.85
HDDC3-204ENST00000559834 PTPRJQ12913 1337 aa9.76□□□□□ -0.85
HDDC3-204ENST00000559834 EPG5Q9HCE0 2579 aa9.75□□□□□ -0.85
HDDC3-204ENST00000559834 LNP1A1A4G5 178 aa9.75□□□□□ -0.85
HDDC3-204ENST00000559834 TBC1D3BA6NDS4 549 aa9.75□□□□□ -0.85
HDDC3-204ENST00000559834 TNFRSF10BO14763 440 aa9.75□□□□□ -0.85
HDDC3-204ENST00000559834 SPTLC2O15270 562 aa9.75□□□□□ -0.85
HDDC3-204ENST00000559834 PPP6R2O75170 966 aa9.75□□□□□ -0.85
HDDC3-204ENST00000559834 KLF8O95600 359 aaPredicted RBP9.75□□□□□ -0.85
HDDC3-204ENST00000559834 STAU1O95793 577 aaKnown RBP9.75□□□□□ -0.85
HDDC3-204ENST00000559834 OAS1P00973 400 aaKnown RBP9.75□□□□□ -0.85
HDDC3-204ENST00000559834 ADH5P11766 374 aa9.75□□□□□ -0.85
HDDC3-204ENST00000559834 CSRP1P21291 193 aaKnown RBP9.75□□□□□ -0.85
HDDC3-204ENST00000559834 TIE1P35590 1138 aa9.75□□□□□ -0.85
HDDC3-204ENST00000559834 SLC6A11P48066 632 aa9.75□□□□□ -0.85
HDDC3-204ENST00000559834 AP3M2P53677 418 aa9.75□□□□□ -0.85
HDDC3-204ENST00000559834 IRX4P78413 519 aa9.75□□□□□ -0.85
HDDC3-204ENST00000559834 GAD2Q05329 585 aa9.75□□□□□ -0.85
HDDC3-204ENST00000559834 CYP24A1Q07973 514 aa9.75□□□□□ -0.85
HDDC3-204ENST00000559834 IFRD2Q12894 506 aaPredicted RBP9.75□□□□□ -0.85
HDDC3-204ENST00000559834 GAB4Q2WGN9 574 aa9.75□□□□□ -0.85
HDDC3-204ENST00000559834 FAM26FQ5R3K3 315 aa9.75□□□□□ -0.85
HDDC3-204ENST00000559834 HECTD3Q5T447 861 aa9.75□□□□□ -0.85
HDDC3-204ENST00000559834 SH3PXD2AQ5TCZ1 1133 aa9.75□□□□□ -0.85
HDDC3-204ENST00000559834 CNNM4Q6P4Q7 775 aa9.75□□□□□ -0.85
HDDC3-204ENST00000559834 TRMT11Q7Z4G4 463 aaKnown RBP9.75□□□□□ -0.85
HDDC3-204ENST00000559834 PGBD3Q8N328 593 aa9.75□□□□□ -0.85
HDDC3-204ENST00000559834 ALLCQ8N6M5 410 aa9.75□□□□□ -0.85
HDDC3-204ENST00000559834 IL17RCQ8NAC3 791 aa9.75□□□□□ -0.85
HDDC3-204ENST00000559834 TXNDC5Q8NBS9 432 aaKnown RBP9.75□□□□□ -0.85
HDDC3-204ENST00000559834 LINC00301Q8NCQ3 95 aa9.75□□□□□ -0.85
HDDC3-204ENST00000559834 B3GALNT2Q8NCR0 500 aa9.75□□□□□ -0.85
HDDC3-204ENST00000559834 OLIG1Q8TAK6 271 aa9.75□□□□□ -0.85
HDDC3-204ENST00000559834 PIGKQ92643 395 aa9.75□□□□□ -0.85
HDDC3-204ENST00000559834 HPS3Q969F9 1004 aa9.75□□□□□ -0.85
HDDC3-204ENST00000559834 FBXO32Q969P5 355 aa9.75□□□□□ -0.85
HDDC3-204ENST00000559834 DHX58Q96C10 678 aa9.75□□□□□ -0.85
HDDC3-204ENST00000559834 TNIP3Q96KP6 325 aa9.75□□□□□ -0.85
HDDC3-204ENST00000559834 CGRRF1Q99675 332 aa9.75□□□□□ -0.85
HDDC3-204ENST00000559834 C7orf25Q9BPX7 421 aa9.75□□□□□ -0.85
HDDC3-204ENST00000559834 NUSAP1Q9BXS6 441 aaKnown RBP9.75□□□□□ -0.85
HDDC3-204ENST00000559834 ARHGEF4Q9NR80 690 aa9.75□□□□□ -0.85
HDDC3-204ENST00000559834 COMMD8Q9NX08 183 aa9.75□□□□□ -0.85
HDDC3-204ENST00000559834 BCCIPQ9P287 314 aaKnown RBP eCLIP9.75□□□□□ -0.85
HDDC3-204ENST00000559834 NXF1Q9UBU9 619 aaKnown RBP9.75□□□□□ -0.85
HDDC3-204ENST00000559834 CHORDC1Q9UHD1 332 aaPredicted RBP9.75□□□□□ -0.85
HDDC3-204ENST00000559834 EVLQ9UI08 416 aaPredicted RBP9.75□□□□□ -0.85
HDDC3-204ENST00000559834 MTMR6Q9Y217 621 aa9.75□□□□□ -0.85
HDDC3-204ENST00000559834 SH3BP1Q9Y3L3 701 aa9.75□□□□□ -0.85
HDDC3-204ENST00000559834 ABCA7Q8IZY2 2146 aa9.74□□□□□ -0.85
HDDC3-204ENST00000559834 FRYLO94915 3013 aa9.74□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 129.2 ms