RNA–Protein interactions for RNA: ENST00000558285.5

USP3-208, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best) BASIC

Gene USP3, Length 1,742 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-208ENST00000558285 ASPAP45381 313 aa9.17□□□□□ -0.94
USP3-208ENST00000558285 IFNAR2P48551 515 aa9.17□□□□□ -0.94
USP3-208ENST00000558285 PPP3CAQ08209 521 aa9.17□□□□□ -0.94
USP3-208ENST00000558285 FCHO2Q0JRZ9 810 aa9.17□□□□□ -0.94
USP3-208ENST00000558285 UBXN2BQ14CS0 331 aa9.17□□□□□ -0.94
USP3-208ENST00000558285 CAMK4Q16566 473 aa9.17□□□□□ -0.94
USP3-208ENST00000558285 TPRG1Q6ZUI0 275 aa9.17□□□□□ -0.94
USP3-208ENST00000558285 NUDT18Q6ZVK8 323 aa9.17□□□□□ -0.94
USP3-208ENST00000558285 GAREM2Q75VX8 874 aa9.17□□□□□ -0.94
USP3-208ENST00000558285 ACOT1Q86TX2 421 aa9.17□□□□□ -0.94
USP3-208ENST00000558285 FAM35AQ86V20 835 aa9.17□□□□□ -0.94
USP3-208ENST00000558285 PARP9Q8IXQ6 854 aa9.17□□□□□ -0.94
USP3-208ENST00000558285 TTC9BQ8N6N2 239 aa9.17□□□□□ -0.94
USP3-208ENST00000558285 MAB21L3Q8N8X9 362 aa9.17□□□□□ -0.94
USP3-208ENST00000558285 ATP2A3Q93084 1043 aa9.17□□□□□ -0.94
USP3-208ENST00000558285 FBXO32Q969P5 355 aa9.17□□□□□ -0.94
USP3-208ENST00000558285 JAKMIP2Q96AA8 810 aa9.17□□□□□ -0.94
USP3-208ENST00000558285 CYFIP2Q96F07 1278 aa9.17□□□□□ -0.94
USP3-208ENST00000558285 TTLL2Q9BWV7 592 aa9.17□□□□□ -0.94
USP3-208ENST00000558285 TLR8Q9NR97 1041 aaKnown RBP9.17□□□□□ -0.94
USP3-208ENST00000558285 TMLHEQ9NVH6 421 aa9.17□□□□□ -0.94
USP3-208ENST00000558285 CALCOCO1Q9P1Z2 691 aa9.17□□□□□ -0.94
USP3-208ENST00000558285 COQ4Q9Y3A0 265 aa9.17□□□□□ -0.94
USP3-208ENST00000558285 ATP2C2O75185 946 aa9.17□□□□□ -0.94
USP3-208ENST00000558285 CILPO75339 1184 aa9.17□□□□□ -0.94
USP3-208ENST00000558285 F11P03951 625 aa9.17□□□□□ -0.94
USP3-208ENST00000558285 RALAP11233 206 aa9.17□□□□□ -0.94
USP3-208ENST00000558285 HMGA1P17096 107 aaKnown RBP9.17□□□□□ -0.94
USP3-208ENST00000558285 GJA1P17302 382 aa9.17□□□□□ -0.94
USP3-208ENST00000558285 CD58P19256 250 aa9.17□□□□□ -0.94
USP3-208ENST00000558285 BRD2P25440 801 aaKnown RBP9.17□□□□□ -0.94
USP3-208ENST00000558285 ERCC5P28715 1186 aaPredicted RBP9.17□□□□□ -0.94
USP3-208ENST00000558285 PLA2G5P39877 138 aa9.17□□□□□ -0.94
USP3-208ENST00000558285 FMO5P49326 533 aa9.17□□□□□ -0.94
USP3-208ENST00000558285 TUBP50607 506 aa9.17□□□□□ -0.94
USP3-208ENST00000558285 SNX16P57768 344 aa9.17□□□□□ -0.94
USP3-208ENST00000558285 CYP4F8P98187 520 aa9.17□□□□□ -0.94
USP3-208ENST00000558285 CUL2Q13617 745 aa9.17□□□□□ -0.94
USP3-208ENST00000558285 GRM2Q14416 872 aa9.17□□□□□ -0.94
USP3-208ENST00000558285 ITPRIPL2Q3MIP1 535 aa9.17□□□□□ -0.94
USP3-208ENST00000558285 ZSCAN23Q3MJ62 389 aa9.17□□□□□ -0.94
USP3-208ENST00000558285 DGKKQ5KSL6 1271 aa9.17□□□□□ -0.94
USP3-208ENST00000558285 HECTD3Q5T447 861 aa9.17□□□□□ -0.94
USP3-208ENST00000558285 ISM2Q6H9L7 571 aa9.17□□□□□ -0.94
USP3-208ENST00000558285 VITQ6UXI7 678 aa9.17□□□□□ -0.94
USP3-208ENST00000558285 CCDC105Q8IYK2 499 aa9.17□□□□□ -0.94
USP3-208ENST00000558285 TMEM130Q8N3G9 435 aa9.17□□□□□ -0.94
USP3-208ENST00000558285 SYNPOQ8N3V7 929 aa9.17□□□□□ -0.94
USP3-208ENST00000558285 PLEKHO2Q8TD55 490 aa9.17□□□□□ -0.94
USP3-208ENST00000558285 SLC2A14Q8TDB8 520 aa9.17□□□□□ -0.94
USP3-208ENST00000558285 ANKRD7Q92527 254 aa9.17□□□□□ -0.94
USP3-208ENST00000558285 GOLGA1Q92805 767 aa9.17□□□□□ -0.94
USP3-208ENST00000558285 CCDC97Q96F63 343 aaPredicted RBP9.17□□□□□ -0.94
USP3-208ENST00000558285 TMEM176AQ96HP8 235 aa9.17□□□□□ -0.94
USP3-208ENST00000558285 ZNF830Q96NB3 372 aaPredicted RBP9.17□□□□□ -0.94
USP3-208ENST00000558285 HNRNPABQ99729 332 aaKnown RBP9.17□□□□□ -0.94
USP3-208ENST00000558285 SRRTQ9BXP5 876 aaKnown RBP9.17□□□□□ -0.94
USP3-208ENST00000558285 NAT10Q9H0A0 1025 aaKnown RBP9.17□□□□□ -0.94
USP3-208ENST00000558285 ZNF334Q9HCZ1 680 aaPredicted RBP9.17□□□□□ -0.94
USP3-208ENST00000558285 SPTLC3Q9NUV7 552 aa9.17□□□□□ -0.94
USP3-208ENST00000558285 TBC1D14Q9P2M4 693 aa9.17□□□□□ -0.94
USP3-208ENST00000558285 PIAS3Q9Y6X2 628 aa9.17□□□□□ -0.94
USP3-208ENST00000558285 TSC2P49815 1807 aa9.16□□□□□ -0.94
USP3-208ENST00000558285 PPP1R3GB7ZBB8 358 aa9.16□□□□□ -0.94
USP3-208ENST00000558285 ATG13O75143 517 aa9.16□□□□□ -0.94
USP3-208ENST00000558285 NFATC1O95644 943 aa9.16□□□□□ -0.94
USP3-208ENST00000558285 TPM3P06753 285 aa9.16□□□□□ -0.94
USP3-208ENST00000558285 TCF3P15923 654 aa9.16□□□□□ -0.94
USP3-208ENST00000558285 VIPR2P41587 438 aa9.16□□□□□ -0.94
USP3-208ENST00000558285 MTIF2P46199 727 aaKnown RBP9.16□□□□□ -0.94
USP3-208ENST00000558285 RAP1GAPP47736 663 aa9.16□□□□□ -0.94
USP3-208ENST00000558285 CDH8P55286 799 aa9.16□□□□□ -0.94
USP3-208ENST00000558285 MARSP56192 900 aaKnown RBP9.16□□□□□ -0.94
USP3-208ENST00000558285 CBX1P83916 185 aa9.16□□□□□ -0.94
USP3-208ENST00000558285 E2F5Q15329 346 aa9.16□□□□□ -0.94
USP3-208ENST00000558285 SGO2Q562F6 1265 aa9.16□□□□□ -0.94
USP3-208ENST00000558285 TTI2Q6NXR4 508 aa9.16□□□□□ -0.94
USP3-208ENST00000558285 LRSAM1Q6UWE0 723 aa9.16□□□□□ -0.94
USP3-208ENST00000558285 DTWD2Q8NBA8 298 aa9.16□□□□□ -0.94
USP3-208ENST00000558285 PJA1Q8NG27 643 aa9.16□□□□□ -0.94
USP3-208ENST00000558285 FAM3CQ92520 227 aa9.16□□□□□ -0.94
USP3-208ENST00000558285 ATOH1Q92858 354 aaPredicted RBP9.16□□□□□ -0.94
USP3-208ENST00000558285 SLC35C1Q96A29 364 aa9.16□□□□□ -0.94
USP3-208ENST00000558285 OTUB2Q96DC9 234 aa9.16□□□□□ -0.94
USP3-208ENST00000558285 ZSWIM3Q96MP5 696 aa9.16□□□□□ -0.94
USP3-208ENST00000558285 TRIM62Q9BVG3 475 aa9.16□□□□□ -0.94
USP3-208ENST00000558285 SLC46A2Q9BY10 475 aa9.16□□□□□ -0.94
USP3-208ENST00000558285 B3GNT5Q9BYG0 378 aa9.16□□□□□ -0.94
USP3-208ENST00000558285 UBXN6Q9BZV1 441 aa9.16□□□□□ -0.94
USP3-208ENST00000558285 ZNF518BQ9C0D4 1074 aa9.16□□□□□ -0.94
USP3-208ENST00000558285 SEMA4AQ9H3S1 761 aa9.16□□□□□ -0.94
USP3-208ENST00000558285 IL21Q9HBE4 155 aa9.16□□□□□ -0.94
USP3-208ENST00000558285 CISHQ9NSE2 258 aa9.16□□□□□ -0.94
USP3-208ENST00000558285 LSM7Q9UK45 103 aaKnown RBP9.16□□□□□ -0.94
USP3-208ENST00000558285 ARHGAP26Q9UNA1 814 aa9.16□□□□□ -0.94
USP3-208ENST00000558285 UNC80Q8N2C7 3258 aa9.16□□□□□ -0.94
USP3-208ENST00000558285 TRIM49BA6NDI0 452 aa9.15□□□□□ -0.94
USP3-208ENST00000558285 FAM170BA6NMN3 283 aa9.15□□□□□ -0.94
USP3-208ENST00000558285 GPR37O15354 613 aa9.15□□□□□ -0.94
USP3-208ENST00000558285 LAMTOR5O43504 91 aa9.15□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms