RNA–Protein interactions for RNA: ENST00000557348.5

SHMT2-229, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 1,659 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-229ENST00000557348 WHRNQ9P202 907 aa13.26□□□□□ -0.29
SHMT2-229ENST00000557348 NR2E1Q9Y466 385 aa13.26□□□□□ -0.29
SHMT2-229ENST00000557348 CYB561D2O14569 222 aa13.25□□□□□ -0.29
SHMT2-229ENST00000557348 LRCH4O75427 683 aa13.25□□□□□ -0.29
SHMT2-229ENST00000557348 ECHS1P30084 290 aa13.25□□□□□ -0.29
SHMT2-229ENST00000557348 SLC6A3Q01959 620 aa13.25□□□□□ -0.29
SHMT2-229ENST00000557348 OGDHQ02218 1023 aa13.25□□□□□ -0.29
SHMT2-229ENST00000557348 SLC25A11Q02978 314 aaKnown RBP13.25□□□□□ -0.29
SHMT2-229ENST00000557348 SOX4Q06945 474 aaPredicted RBP13.25□□□□□ -0.29
SHMT2-229ENST00000557348 GRIK3Q13003 919 aa13.25□□□□□ -0.29
SHMT2-229ENST00000557348 PTK6Q13882 451 aa13.25□□□□□ -0.29
SHMT2-229ENST00000557348 DSC3Q14574 896 aa13.25□□□□□ -0.29
SHMT2-229ENST00000557348 ZKSCAN8Q15776 578 aaPredicted RBP13.25□□□□□ -0.29
SHMT2-229ENST00000557348 SPOCD1Q6ZMY3 1216 aa13.25□□□□□ -0.29
SHMT2-229ENST00000557348 CPNE8Q86YQ8 564 aa13.25□□□□□ -0.29
SHMT2-229ENST00000557348 CCDC13Q8IYE1 715 aa13.25□□□□□ -0.29
SHMT2-229ENST00000557348 MAB21L3Q8N8X9 362 aa13.25□□□□□ -0.29
SHMT2-229ENST00000557348 CCDC89Q8N998 374 aa13.25□□□□□ -0.29
SHMT2-229ENST00000557348 B3GALNT2Q8NCR0 500 aa13.25□□□□□ -0.29
SHMT2-229ENST00000557348 UBA3Q8TBC4 463 aa13.25□□□□□ -0.29
SHMT2-229ENST00000557348 HNRNPABQ99729 332 aaKnown RBP13.25□□□□□ -0.29
SHMT2-229ENST00000557348 RSAD1Q9HA92 442 aa13.25□□□□□ -0.29
SHMT2-229ENST00000557348 DSEQ9UL01 958 aa13.25□□□□□ -0.29
SHMT2-229ENST00000557348 LRRD1A4D1F6 860 aa13.24□□□□□ -0.29
SHMT2-229ENST00000557348 GMNCA6NCL1 334 aa13.24□□□□□ -0.29
SHMT2-229ENST00000557348 ARL5CA6NH57 179 aa13.24□□□□□ -0.29
SHMT2-229ENST00000557348 C2CD4BA6NLJ0 364 aa13.24□□□□□ -0.29
SHMT2-229ENST00000557348 E5RJQ4 531 aa13.24□□□□□ -0.29
SHMT2-229ENST00000557348 GABRDO14764 452 aa13.24□□□□□ -0.29
SHMT2-229ENST00000557348 INPPL1O15357 1258 aa13.24□□□□□ -0.29
SHMT2-229ENST00000557348 MYCNP04198 464 aaPredicted RBP13.24□□□□□ -0.29
SHMT2-229ENST00000557348 PFKMP08237 780 aa13.24□□□□□ -0.29
SHMT2-229ENST00000557348 ITIH2P19823 946 aa13.24□□□□□ -0.29
SHMT2-229ENST00000557348 PCSK1P29120 753 aa13.24□□□□□ -0.29
SHMT2-229ENST00000557348 SDC4P31431 198 aa13.24□□□□□ -0.29
SHMT2-229ENST00000557348 GJC1P36383 396 aa13.24□□□□□ -0.29
SHMT2-229ENST00000557348 MLH1P40692 756 aa13.24□□□□□ -0.29
SHMT2-229ENST00000557348 EIF3BP55884 814 aaKnown RBP13.24□□□□□ -0.29
SHMT2-229ENST00000557348 LPIN1Q14693 890 aa13.24□□□□□ -0.29
SHMT2-229ENST00000557348 TRIM71Q2Q1W2 868 aaKnown RBP13.24□□□□□ -0.29
SHMT2-229ENST00000557348 OLFML1Q6UWY5 402 aa13.24□□□□□ -0.29
SHMT2-229ENST00000557348 ZNF365Q70YC5 407 aa13.24□□□□□ -0.29
SHMT2-229ENST00000557348 SLC26A9Q7LBE3 791 aa13.24□□□□□ -0.29
SHMT2-229ENST00000557348 TTC30AQ86WT1 665 aa13.24□□□□□ -0.29
SHMT2-229ENST00000557348 MAP7D3Q8IWC1 876 aa13.24□□□□□ -0.29
SHMT2-229ENST00000557348 PARP9Q8IXQ6 854 aa13.24□□□□□ -0.29
SHMT2-229ENST00000557348 SLC43A3Q8NBI5 491 aa13.24□□□□□ -0.29
SHMT2-229ENST00000557348 TRIM51Q9BSJ1 452 aa13.24□□□□□ -0.29
SHMT2-229ENST00000557348 FTHL17Q9BXU8 183 aa13.24□□□□□ -0.29
SHMT2-229ENST00000557348 FOXP3Q9BZS1 431 aa13.24□□□□□ -0.29
SHMT2-229ENST00000557348 DPH5Q9H2P9 285 aa13.24□□□□□ -0.29
SHMT2-229ENST00000557348 TMBIM4Q9HC24 238 aa13.24□□□□□ -0.29
SHMT2-229ENST00000557348 hCG_1818297A0A087WSY0 165 aa13.24□□□□□ -0.29
SHMT2-229ENST00000557348 ZNF487B1APH4 448 aa13.24□□□□□ -0.29
SHMT2-229ENST00000557348 KBTBD13C9JR72 458 aa13.24□□□□□ -0.29
SHMT2-229ENST00000557348 XPO1O14980 1071 aaKnown RBP13.24□□□□□ -0.29
SHMT2-229ENST00000557348 SPTLC1O15269 473 aa13.24□□□□□ -0.29
SHMT2-229ENST00000557348 PRPSAP2O60256 369 aa13.24□□□□□ -0.29
SHMT2-229ENST00000557348 GJB6O95452 261 aa13.24□□□□□ -0.29
SHMT2-229ENST00000557348 INHAP05111 366 aa13.24□□□□□ -0.29
SHMT2-229ENST00000557348 ODC1P11926 461 aa13.24□□□□□ -0.29
SHMT2-229ENST00000557348 PDGFRAP16234 1089 aa13.24□□□□□ -0.29
SHMT2-229ENST00000557348 CD52P31358 61 aa13.24□□□□□ -0.29
SHMT2-229ENST00000557348 CDKN2BP42772 138 aa13.24□□□□□ -0.29
SHMT2-229ENST00000557348 PTPN9P43378 593 aa13.24□□□□□ -0.29
SHMT2-229ENST00000557348 KRT17Q04695 432 aa13.24□□□□□ -0.29
SHMT2-229ENST00000557348 BOLA3Q53S33 107 aa13.24□□□□□ -0.29
SHMT2-229ENST00000557348 EFHC1Q5JVL4 640 aa13.24□□□□□ -0.29
SHMT2-229ENST00000557348 TTC27Q6P3X3 843 aa13.24□□□□□ -0.29
SHMT2-229ENST00000557348 FAM183BPQ6ZVS7 135 aa13.24□□□□□ -0.29
SHMT2-229ENST00000557348 C12orf29Q8N999 325 aa13.24□□□□□ -0.29
SHMT2-229ENST00000557348 JOSD2Q8TAC2 188 aa13.24□□□□□ -0.29
SHMT2-229ENST00000557348 TEKT4Q8WW24 435 aa13.24□□□□□ -0.29
SHMT2-229ENST00000557348 WNT8BQ93098 351 aa13.24□□□□□ -0.29
SHMT2-229ENST00000557348 SNF8Q96H20 258 aa13.24□□□□□ -0.29
SHMT2-229ENST00000557348 CCDC114Q96M63 670 aa13.24□□□□□ -0.29
SHMT2-229ENST00000557348 GAD1Q99259 594 aa13.24□□□□□ -0.29
SHMT2-229ENST00000557348 CXCL16Q9H2A7 254 aa13.24□□□□□ -0.29
SHMT2-229ENST00000557348 PLEKHA4Q9H4M7 779 aa13.24□□□□□ -0.29
SHMT2-229ENST00000557348 AGO3Q9H9G7 860 aaKnown RBP13.24□□□□□ -0.29
SHMT2-229ENST00000557348 FAM49BQ9NUQ9 324 aa13.24□□□□□ -0.29
SHMT2-229ENST00000557348 USP18Q9UMW8 372 aa13.24□□□□□ -0.29
SHMT2-229ENST00000557348 DRG1Q9Y295 367 aaKnown RBP13.24□□□□□ -0.29
SHMT2-229ENST00000557348 TCRBV7S2A1N4TA0A589 114 aa13.23□□□□□ -0.29
SHMT2-229ENST00000557348 CFAP73A6NFT4 308 aa13.23□□□□□ -0.29
SHMT2-229ENST00000557348 ANKRD65E5RJM6 399 aa13.23□□□□□ -0.29
SHMT2-229ENST00000557348 PPFIA2O75334 1257 aa13.23□□□□□ -0.29
SHMT2-229ENST00000557348 EOMESO95936 686 aa13.23□□□□□ -0.29
SHMT2-229ENST00000557348 MYZAPP0CAP1 466 aa13.23□□□□□ -0.29
SHMT2-229ENST00000557348 COL6A1P12109 1028 aa13.23□□□□□ -0.29
SHMT2-229ENST00000557348 GRK4P32298 578 aa13.23□□□□□ -0.29
SHMT2-229ENST00000557348 PLCB3Q01970 1234 aa13.23□□□□□ -0.29
SHMT2-229ENST00000557348 TFDP2Q14188 446 aa13.23□□□□□ -0.29
SHMT2-229ENST00000557348 PDK2Q15119 407 aa13.23□□□□□ -0.29
SHMT2-229ENST00000557348 TAZQ16635 292 aa13.23□□□□□ -0.29
SHMT2-229ENST00000557348 PMF1Q6P1K2 205 aa13.23□□□□□ -0.29
SHMT2-229ENST00000557348 AGMOQ6ZNB7 445 aa13.23□□□□□ -0.29
SHMT2-229ENST00000557348 TMC3Q7Z5M5 1100 aa13.23□□□□□ -0.29
SHMT2-229ENST00000557348 METTL23Q86XA0 190 aa13.23□□□□□ -0.29
SHMT2-229ENST00000557348 APLFQ8IW19 511 aaPredicted RBP13.23□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 45.8 ms