RNA–Protein interactions for RNA: ENST00000556689.5

SHMT2-223, Transcript of serine hydroxymethyltransferase 2, human

TSL 3

Gene SHMT2, Length 768 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SHMT2-223	ENST00000556689	MBD1	Q9UIS9	605 aa	Predicted RBP	13.52	□□□□□ -0.25
SHMT2-223	ENST00000556689	MSRB2	Q9Y3D2	182 aa		13.52	□□□□□ -0.25
SHMT2-223	ENST00000556689	CPQ	Q9Y646	472 aa		13.52	□□□□□ -0.25
SHMT2-223	ENST00000556689	DENND4C	Q5VZ89	1909 aa		13.52	□□□□□ -0.25
SHMT2-223	ENST00000556689	UPK3BL1	B0FP48	263 aa		13.51	□□□□□ -0.25
SHMT2-223	ENST00000556689	UPK3BL2	E5RIL1	263 aa		13.51	□□□□□ -0.25
SHMT2-223	ENST00000556689	TRIM66	O15016	1216 aa		13.51	□□□□□ -0.25
SHMT2-223	ENST00000556689	KIR2DL1	P43626	348 aa	Predicted RBP	13.51	□□□□□ -0.25
SHMT2-223	ENST00000556689	ATXN3	P54252	364 aa	Predicted RBP	13.51	□□□□□ -0.25
SHMT2-223	ENST00000556689	NOP14	P78316	857 aa	Known RBP	13.51	□□□□□ -0.25
SHMT2-223	ENST00000556689	REST	Q13127	1097 aa		13.51	□□□□□ -0.25
SHMT2-223	ENST00000556689	SEMA3B	Q13214	749 aa		13.51	□□□□□ -0.25
SHMT2-223	ENST00000556689	DUOXA2	Q1HG44	320 aa		13.51	□□□□□ -0.25
SHMT2-223	ENST00000556689	MAP7D1	Q3KQU3	841 aa		13.51	□□□□□ -0.25
SHMT2-223	ENST00000556689	TDRD10	Q5VZ19	366 aa	Known RBP	13.51	□□□□□ -0.25
SHMT2-223	ENST00000556689	LYSMD4	Q5XG99	296 aa		13.51	□□□□□ -0.25
SHMT2-223	ENST00000556689	LARP1B	Q659C4	914 aa	Known RBP	13.51	□□□□□ -0.25
SHMT2-223	ENST00000556689	USP49	Q70CQ1	688 aa		13.51	□□□□□ -0.25
SHMT2-223	ENST00000556689	SV2B	Q7L1I2	683 aa		13.51	□□□□□ -0.25
SHMT2-223	ENST00000556689	PIP4P1	Q86T03	277 aa		13.51	□□□□□ -0.25
SHMT2-223	ENST00000556689	HDDC3	Q8N4P3	179 aa		13.51	□□□□□ -0.25
SHMT2-223	ENST00000556689	CEP76	Q8TAP6	659 aa		13.51	□□□□□ -0.25
SHMT2-223	ENST00000556689	MYCBPAP	Q8TBZ2	947 aa		13.51	□□□□□ -0.25
SHMT2-223	ENST00000556689	KBTBD7	Q8WVZ9	684 aa		13.51	□□□□□ -0.25
SHMT2-223	ENST00000556689	HMGB4	Q8WW32	186 aa		13.51	□□□□□ -0.25
SHMT2-223	ENST00000556689	DNAJC19	Q96DA6	116 aa		13.51	□□□□□ -0.25
SHMT2-223	ENST00000556689	TMX3	Q96JJ7	454 aa		13.51	□□□□□ -0.25
SHMT2-223	ENST00000556689	FAM84A	Q96KN4	292 aa		13.51	□□□□□ -0.25
SHMT2-223	ENST00000556689	CBWD1	Q9BRT8	395 aa		13.51	□□□□□ -0.25
SHMT2-223	ENST00000556689	CRTAC1	Q9NQ79	661 aa		13.51	□□□□□ -0.25
SHMT2-223	ENST00000556689	ARHGEF4	Q9NR80	690 aa		13.51	□□□□□ -0.25
SHMT2-223	ENST00000556689	INTS13	Q9NVM9	706 aa		13.51	□□□□□ -0.25
SHMT2-223	ENST00000556689	SMPD4	Q9NXE4	827 aa		13.51	□□□□□ -0.25
SHMT2-223	ENST00000556689	STK17A	Q9UEE5	414 aa		13.51	□□□□□ -0.25
SHMT2-223	ENST00000556689	PILRB	Q9UKJ0	227 aa		13.51	□□□□□ -0.25
SHMT2-223	ENST00000556689	WDFY3	Q8IZQ1	3526 aa		13.5	□□□□□ -0.25
SHMT2-223	ENST00000556689	SPAAR	A0A1B0GVQ0	90 aa		13.5	□□□□□ -0.25
SHMT2-223	ENST00000556689	PALM2-AKAP2	B1ALY0	433 aa	Predicted RBP	13.5	□□□□□ -0.25
SHMT2-223	ENST00000556689	ADAM23	O75077	832 aa		13.5	□□□□□ -0.25
SHMT2-223	ENST00000556689	ADH1C	P00326	375 aa		13.5	□□□□□ -0.25
SHMT2-223	ENST00000556689	TNNC2	P02585	160 aa		13.5	□□□□□ -0.25
SHMT2-223	ENST00000556689	CFI	P05156	583 aa		13.5	□□□□□ -0.25
SHMT2-223	ENST00000556689	WARS	P23381	471 aa	Known RBP	13.5	□□□□□ -0.25
SHMT2-223	ENST00000556689	ITPKA	P23677	461 aa		13.5	□□□□□ -0.25
SHMT2-223	ENST00000556689	HOXD12	P35452	270 aa		13.5	□□□□□ -0.25
SHMT2-223	ENST00000556689	GNL1	P36915	607 aa	Predicted RBP	13.5	□□□□□ -0.25
SHMT2-223	ENST00000556689	SIM1	P81133	766 aa	Predicted RBP	13.5	□□□□□ -0.25
SHMT2-223	ENST00000556689	RING1	Q06587	406 aa		13.5	□□□□□ -0.25
SHMT2-223	ENST00000556689	MESP2	Q0VG99	397 aa		13.5	□□□□□ -0.25
SHMT2-223	ENST00000556689	TAF10	Q12962	218 aa		13.5	□□□□□ -0.25
SHMT2-223	ENST00000556689	ALCAM	Q13740	583 aa		13.5	□□□□□ -0.25
SHMT2-223	ENST00000556689	ACAP1	Q15027	740 aa		13.5	□□□□□ -0.25
SHMT2-223	ENST00000556689	DUOXA1	Q1HG43	343 aa		13.5	□□□□□ -0.25
SHMT2-223	ENST00000556689	RRAGB	Q5VZM2	374 aa		13.5	□□□□□ -0.25
SHMT2-223	ENST00000556689	HS2ST1	Q7LGA3	356 aa		13.5	□□□□□ -0.25
SHMT2-223	ENST00000556689	BRAP	Q7Z569	592 aa		13.5	□□□□□ -0.25
SHMT2-223	ENST00000556689	DDX42	Q86XP3	938 aa	Known RBP eCLIP	13.5	□□□□□ -0.25
SHMT2-223	ENST00000556689	GPD1L	Q8N335	351 aa		13.5	□□□□□ -0.25
SHMT2-223	ENST00000556689	KCNV2	Q8TDN2	545 aa		13.5	□□□□□ -0.25
SHMT2-223	ENST00000556689	PCED1B	Q96HM7	432 aa		13.5	□□□□□ -0.25
SHMT2-223	ENST00000556689	C8orf48	Q96LL4	319 aa		13.5	□□□□□ -0.25
SHMT2-223	ENST00000556689	MMS19	Q96T76	1030 aa		13.5	□□□□□ -0.25
SHMT2-223	ENST00000556689	OLFML3	Q9NRN5	406 aa		13.5	□□□□□ -0.25
SHMT2-223	ENST00000556689	CFAP97	Q9P2B7	532 aa		13.5	□□□□□ -0.25
SHMT2-223	ENST00000556689	TBC1D14	Q9P2M4	693 aa		13.5	□□□□□ -0.25
SHMT2-223	ENST00000556689	SLC6A14	Q9UN76	642 aa		13.5	□□□□□ -0.25
SHMT2-223	ENST00000556689	SMC3	Q9UQE7	1217 aa		13.5	□□□□□ -0.25
SHMT2-223	ENST00000556689	CEP295	Q9C0D2	2601 aa		13.49	□□□□□ -0.25
SHMT2-223	ENST00000556689	THADA	Q6YHU6	1953 aa		13.49	□□□□□ -0.25
SHMT2-223	ENST00000556689	TCHH	Q07283	1943 aa		13.49	□□□□□ -0.25
SHMT2-223	ENST00000556689	TCRBV21S2A2	A0A5A6	115 aa		13.49	□□□□□ -0.25
SHMT2-223	ENST00000556689	TBC1D3B	A6NDS4	549 aa		13.49	□□□□□ -0.25
SHMT2-223	ENST00000556689	ZNF233	A6NK53	670 aa		13.49	□□□□□ -0.25
SHMT2-223	ENST00000556689		F8VP50	259 aa		13.49	□□□□□ -0.25
SHMT2-223	ENST00000556689		H0Y626	953 aa		13.49	□□□□□ -0.25
SHMT2-223	ENST00000556689	SCAMP3	O14828	347 aa	Known RBP	13.49	□□□□□ -0.25
SHMT2-223	ENST00000556689	KIAA0391	O15091	583 aa	Known RBP	13.49	□□□□□ -0.25
SHMT2-223	ENST00000556689	AP5Z1	O43299	807 aa		13.49	□□□□□ -0.25
SHMT2-223	ENST00000556689	TRIM16	O95361	564 aa		13.49	□□□□□ -0.25
SHMT2-223	ENST00000556689	OLFM2	O95897	454 aa		13.49	□□□□□ -0.25
SHMT2-223	ENST00000556689	OAS1	P00973	400 aa	Known RBP	13.49	□□□□□ -0.25
SHMT2-223	ENST00000556689	MBL2	P11226	248 aa	Predicted RBP	13.49	□□□□□ -0.25
SHMT2-223	ENST00000556689	CHRM1	P11229	460 aa	Predicted RBP	13.49	□□□□□ -0.25
SHMT2-223	ENST00000556689	ADH5	P11766	374 aa		13.49	□□□□□ -0.25
SHMT2-223	ENST00000556689	IDE	P14735	1019 aa		13.49	□□□□□ -0.25
SHMT2-223	ENST00000556689	CASP5	P51878	434 aa		13.49	□□□□□ -0.25
SHMT2-223	ENST00000556689	GAD2	Q05329	585 aa		13.49	□□□□□ -0.25
SHMT2-223	ENST00000556689	GFPT1	Q06210	699 aa	Predicted RBP	13.49	□□□□□ -0.25
SHMT2-223	ENST00000556689	RABEP1	Q15276	862 aa		13.49	□□□□□ -0.25
SHMT2-223	ENST00000556689	SURF1	Q15526	300 aa		13.49	□□□□□ -0.25
SHMT2-223	ENST00000556689	PREPL	Q4J6C6	727 aa	Predicted RBP	13.49	□□□□□ -0.25
SHMT2-223	ENST00000556689	PEAR1	Q5VY43	1037 aa	Predicted RBP	13.49	□□□□□ -0.25
SHMT2-223	ENST00000556689	SLC36A4	Q6YBV0	504 aa		13.49	□□□□□ -0.25
SHMT2-223	ENST00000556689	NUDT18	Q6ZVK8	323 aa		13.49	□□□□□ -0.25
SHMT2-223	ENST00000556689	C12orf40	Q86WS4	652 aa		13.49	□□□□□ -0.25
SHMT2-223	ENST00000556689	OR5B17	Q8NGF7	314 aa		13.49	□□□□□ -0.25
SHMT2-223	ENST00000556689	SLITRK1	Q96PX8	696 aa		13.49	□□□□□ -0.25
SHMT2-223	ENST00000556689	GTPBP2	Q9BX10	602 aa	Known RBP	13.49	□□□□□ -0.25
SHMT2-223	ENST00000556689	SNX25	Q9H3E2	840 aa		13.49	□□□□□ -0.25
SHMT2-223	ENST00000556689	KLK13	Q9UKR3	277 aa		13.49	□□□□□ -0.25

Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms