RNA–Protein interactions for RNA: ENST00000555550.1

SCFD1-216, Transcript of sec1 family domain containing 1, humanhuman

TSL 4

Gene SCFD1, Length 541 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-216ENST00000555550 PLEKHG6Q3KR16 790 aa4.73□□□□□ -1.65
SCFD1-216ENST00000555550 DEPDC1Q5TB30 811 aa4.73□□□□□ -1.65
SCFD1-216ENST00000555550 KIAA1161Q6NSJ0 714 aa4.73□□□□□ -1.65
SCFD1-216ENST00000555550 NPNTQ6UXI9 565 aa4.73□□□□□ -1.65
SCFD1-216ENST00000555550 ZNF804AQ7Z570 1209 aa4.73□□□□□ -1.65
SCFD1-216ENST00000555550 SLC15A3Q8IY34 581 aa4.73□□□□□ -1.65
SCFD1-216ENST00000555550 RAVER1Q8IY67 606 aaKnown RBP4.73□□□□□ -1.65
SCFD1-216ENST00000555550 KBTBD7Q8WVZ9 684 aa4.73□□□□□ -1.65
SCFD1-216ENST00000555550 GLG1Q92896 1179 aa4.73□□□□□ -1.65
SCFD1-216ENST00000555550 R3HDM4Q96D70 268 aa4.73□□□□□ -1.65
SCFD1-216ENST00000555550 RITA1Q96K30 269 aa4.73□□□□□ -1.65
SCFD1-216ENST00000555550 B3GNT5Q9BYG0 378 aa4.73□□□□□ -1.65
SCFD1-216ENST00000555550 CAMSAP3Q9P1Y5 1249 aaPredicted RBP4.73□□□□□ -1.65
SCFD1-216ENST00000555550 TCEAL9Q9UHQ7 104 aa4.73□□□□□ -1.65
SCFD1-216ENST00000555550 THRAP3Q9Y2W1 955 aaKnown RBP4.73□□□□□ -1.65
SCFD1-216ENST00000555550 NOTCH4Q99466 2003 aa4.72□□□□□ -1.65
SCFD1-216ENST00000555550 A1L4Q6 167 aa4.72□□□□□ -1.65
SCFD1-216ENST00000555550 BCAR3O75815 825 aa4.72□□□□□ -1.65
SCFD1-216ENST00000555550 TUSC2O75896 110 aa4.72□□□□□ -1.65
SCFD1-216ENST00000555550 IL6RP08887 468 aaPredicted RBP4.72□□□□□ -1.65
SCFD1-216ENST00000555550 SLC7A1P30825 629 aa4.72□□□□□ -1.65
SCFD1-216ENST00000555550 PDE6CP51160 858 aa4.72□□□□□ -1.65
SCFD1-216ENST00000555550 WNT3P56703 355 aa4.72□□□□□ -1.65
SCFD1-216ENST00000555550 SLC13A2Q13183 592 aa4.72□□□□□ -1.65
SCFD1-216ENST00000555550 CTBP1Q13363 440 aa4.72□□□□□ -1.65
SCFD1-216ENST00000555550 RAB32Q13637 225 aa4.72□□□□□ -1.65
SCFD1-216ENST00000555550 MINDY4Q4G0A6 757 aa4.72□□□□□ -1.65
SCFD1-216ENST00000555550 CXorf57Q6NSI4 855 aaKnown RBP4.72□□□□□ -1.65
SCFD1-216ENST00000555550 PPP4R4Q6NUP7 873 aa4.72□□□□□ -1.65
SCFD1-216ENST00000555550 WDR53Q7Z5U6 358 aaPredicted RBP4.72□□□□□ -1.65
SCFD1-216ENST00000555550 ZNF280BQ86YH2 543 aa4.72□□□□□ -1.65
SCFD1-216ENST00000555550 JDP2Q8WYK2 163 aa4.72□□□□□ -1.65
SCFD1-216ENST00000555550 RAPGEF4Q8WZA2 1011 aa4.72□□□□□ -1.65
SCFD1-216ENST00000555550 DPCDQ9BVM2 203 aaPredicted RBP4.72□□□□□ -1.65
SCFD1-216ENST00000555550 TRIM54Q9BYV2 358 aa4.72□□□□□ -1.65
SCFD1-216ENST00000555550 MS4A7Q9GZW8 240 aaPredicted RBP4.72□□□□□ -1.65
SCFD1-216ENST00000555550 LOC105371045A0A1W2PR82 267 aa4.71□□□□□ -1.66
SCFD1-216ENST00000555550 CAPN8A6NHC0 703 aa4.71□□□□□ -1.66
SCFD1-216ENST00000555550 E5RJQ4 531 aa4.71□□□□□ -1.66
SCFD1-216ENST00000555550 PDE8BO95263 885 aa4.71□□□□□ -1.66
SCFD1-216ENST00000555550 SCGB1D2O95969 90 aa4.71□□□□□ -1.66
SCFD1-216ENST00000555550 NPSP0C0P6 89 aa4.71□□□□□ -1.66
SCFD1-216ENST00000555550 AGFG1P52594 562 aaKnown RBP4.71□□□□□ -1.66
SCFD1-216ENST00000555550 TPTEP56180 551 aa4.71□□□□□ -1.66
SCFD1-216ENST00000555550 MYO1EQ12965 1108 aa4.71□□□□□ -1.66
SCFD1-216ENST00000555550 ARHGAP29Q52LW3 1261 aa4.71□□□□□ -1.66
SCFD1-216ENST00000555550 FCRL6Q6DN72 434 aa4.71□□□□□ -1.66
SCFD1-216ENST00000555550 SHC4Q6S5L8 630 aa4.71□□□□□ -1.66
SCFD1-216ENST00000555550 OVCH2Q7RTZ1 564 aa4.71□□□□□ -1.66
SCFD1-216ENST00000555550 COL23A1Q86Y22 540 aaPredicted RBP4.71□□□□□ -1.66
SCFD1-216ENST00000555550 SMRP1Q8NCR6 262 aa4.71□□□□□ -1.66
SCFD1-216ENST00000555550 OSCP1Q8WVF1 389 aa4.71□□□□□ -1.66
SCFD1-216ENST00000555550 ZC3H10Q96K80 434 aaKnown RBP4.71□□□□□ -1.66
SCFD1-216ENST00000555550 CXorf36Q9H7Y0 433 aa4.71□□□□□ -1.66
SCFD1-216ENST00000555550 TRMT13Q9NUP7 481 aaKnown RBP4.71□□□□□ -1.66
SCFD1-216ENST00000555550 SH2B3Q9UQQ2 575 aa4.71□□□□□ -1.66
SCFD1-216ENST00000555550 A0A087WWL8 130 aa4.7□□□□□ -1.66
SCFD1-216ENST00000555550 CFAP69A5D8W1 941 aa4.7□□□□□ -1.66
SCFD1-216ENST00000555550 FAM227AF5H4B4 570 aa4.7□□□□□ -1.66
SCFD1-216ENST00000555550 FCHO1O14526 889 aa4.7□□□□□ -1.66
SCFD1-216ENST00000555550 FGBP02675 491 aa4.7□□□□□ -1.66
SCFD1-216ENST00000555550 ATP5F1P24539 256 aaPredicted RBP4.7□□□□□ -1.66
SCFD1-216ENST00000555550 IL1R2P27930 398 aa4.7□□□□□ -1.66
SCFD1-216ENST00000555550 ADORA2AP29274 412 aa4.7□□□□□ -1.66
SCFD1-216ENST00000555550 PLA1AQ53H76 456 aa4.7□□□□□ -1.66
SCFD1-216ENST00000555550 FAM102BQ5T8I3 360 aa4.7□□□□□ -1.66
SCFD1-216ENST00000555550 TRIM72Q6ZMU5 477 aa4.7□□□□□ -1.66
SCFD1-216ENST00000555550 PARS2Q7L3T8 475 aaKnown RBP4.7□□□□□ -1.66
SCFD1-216ENST00000555550 MAEAQ7L5Y9 396 aa4.7□□□□□ -1.66
SCFD1-216ENST00000555550 MRPL10Q7Z7H8 261 aaKnown RBP4.7□□□□□ -1.66
SCFD1-216ENST00000555550 ACRBPQ8NEB7 543 aa4.7□□□□□ -1.66
SCFD1-216ENST00000555550 MESP1Q9BRJ9 268 aa4.7□□□□□ -1.66
SCFD1-216ENST00000555550 G3BP2Q9UN86 482 aaKnown RBP4.7□□□□□ -1.66
SCFD1-216ENST00000555550 ADAMTS5Q9UNA0 930 aa4.7□□□□□ -1.66
SCFD1-216ENST00000555550 TMEM233B4DJY2 109 aa4.69□□□□□ -1.66
SCFD1-216ENST00000555550 ADAM10O14672 748 aa4.69□□□□□ -1.66
SCFD1-216ENST00000555550 PRPF3O43395 683 aaKnown RBP4.69□□□□□ -1.66
SCFD1-216ENST00000555550 BRAFP15056 766 aa4.69□□□□□ -1.66
SCFD1-216ENST00000555550 DGKEP52429 567 aa4.69□□□□□ -1.66
SCFD1-216ENST00000555550 ARFIP2P53365 341 aa4.69□□□□□ -1.66
SCFD1-216ENST00000555550 CNN3Q15417 329 aaKnown RBP4.69□□□□□ -1.66
SCFD1-216ENST00000555550 TRIM71Q2Q1W2 868 aaKnown RBP4.69□□□□□ -1.66
SCFD1-216ENST00000555550 TBC1D25Q3MII6 688 aa4.69□□□□□ -1.66
SCFD1-216ENST00000555550 IL31RAQ8NI17 732 aa4.69□□□□□ -1.66
SCFD1-216ENST00000555550 RP9Q8TA86 221 aaKnown RBP4.69□□□□□ -1.66
SCFD1-216ENST00000555550 BPIFB1Q8TDL5 484 aa4.69□□□□□ -1.66
SCFD1-216ENST00000555550 TMEM171Q8WVE6 324 aa4.69□□□□□ -1.66
SCFD1-216ENST00000555550 RUNDC1Q96C34 613 aa4.69□□□□□ -1.66
SCFD1-216ENST00000555550 SUCLG2Q96I99 432 aa4.69□□□□□ -1.66
SCFD1-216ENST00000555550 MARK4Q96L34 752 aa4.69□□□□□ -1.66
SCFD1-216ENST00000555550 TMEM60Q9H2L4 133 aa4.69□□□□□ -1.66
SCFD1-216ENST00000555550 FAM204AQ9H8W3 233 aa4.69□□□□□ -1.66
SCFD1-216ENST00000555550 C1orf112Q9NSG2 853 aa4.69□□□□□ -1.66
SCFD1-216ENST00000555550 SACM1LQ9NTJ5 587 aa4.69□□□□□ -1.66
SCFD1-216ENST00000555550 EID1Q9Y6B2 187 aa4.69□□□□□ -1.66
SCFD1-216ENST00000555550 ERC2O15083 957 aa4.68□□□□□ -1.66
SCFD1-216ENST00000555550 EXOC3O60645 756 aa4.68□□□□□ -1.66
SCFD1-216ENST00000555550 RASSF9O75901 435 aa4.68□□□□□ -1.66
SCFD1-216ENST00000555550 ALPLP05186 524 aa4.68□□□□□ -1.66
SCFD1-216ENST00000555550 CSF1RP07333 972 aa4.68□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms