RNA–Protein interactions for RNA: ENST00000553868.1

SHMT2-208, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 941 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-208ENST00000553868 SHDQ96IW2 340 aa15.34■□□□□ 0.05
SHMT2-208ENST00000553868 PPP1R13BQ96KQ4 1090 aa15.34■□□□□ 0.05
SHMT2-208ENST00000553868 FAM193BQ96PV7 902 aaPredicted RBP15.34■□□□□ 0.05
SHMT2-208ENST00000553868 DDX23Q9BUQ8 820 aaKnown RBP15.34■□□□□ 0.05
SHMT2-208ENST00000553868 MRPL9Q9BYD2 267 aaKnown RBP15.34■□□□□ 0.05
SHMT2-208ENST00000553868 PDCL3Q9H2J4 239 aa15.34■□□□□ 0.05
SHMT2-208ENST00000553868 SEPT11Q9NVA2 429 aaKnown RBP15.34■□□□□ 0.05
SHMT2-208ENST00000553868 NOCTQ9UK39 431 aaKnown RBP15.34■□□□□ 0.05
SHMT2-208ENST00000553868 KIAA1257Q9ULG3 409 aa15.34■□□□□ 0.05
SHMT2-208ENST00000553868 PCDHA13Q9Y5I0 950 aa15.34■□□□□ 0.05
SHMT2-208ENST00000553868 A0A087X0T9 212 aa15.33■□□□□ 0.04
SHMT2-208ENST00000553868 MED7O43513 233 aa15.33■□□□□ 0.04
SHMT2-208ENST00000553868 KRT86O43790 486 aa15.33■□□□□ 0.04
SHMT2-208ENST00000553868 HUS1O60921 280 aa15.33■□□□□ 0.04
SHMT2-208ENST00000553868 POMCP01189 267 aa15.33■□□□□ 0.04
SHMT2-208ENST00000553868 FAM228BP0C875 321 aa15.33■□□□□ 0.04
SHMT2-208ENST00000553868 GNA15P30679 374 aa15.33■□□□□ 0.04
SHMT2-208ENST00000553868 ZNF132P52740 706 aa15.33■□□□□ 0.04
SHMT2-208ENST00000553868 RNASELQ05823 741 aaKnown RBP15.33■□□□□ 0.04
SHMT2-208ENST00000553868 GFPT1Q06210 699 aaPredicted RBP15.33■□□□□ 0.04
SHMT2-208ENST00000553868 INCA1Q0VD86 236 aa15.33■□□□□ 0.04
SHMT2-208ENST00000553868 KIF5AQ12840 1032 aa15.33■□□□□ 0.04
SHMT2-208ENST00000553868 NAB2Q15742 525 aa15.33■□□□□ 0.04
SHMT2-208ENST00000553868 MLF2Q15773 248 aaPredicted RBP15.33■□□□□ 0.04
SHMT2-208ENST00000553868 CCDC122Q5T0U0 273 aa15.33■□□□□ 0.04
SHMT2-208ENST00000553868 SCARA3Q6AZY7 606 aa15.33■□□□□ 0.04
SHMT2-208ENST00000553868 ALKBH5Q6P6C2 394 aaKnown RBP15.33■□□□□ 0.04
SHMT2-208ENST00000553868 PRR23BQ6ZRT6 265 aa15.33■□□□□ 0.04
SHMT2-208ENST00000553868 NOP9Q86U38 636 aaKnown RBP15.33■□□□□ 0.04
SHMT2-208ENST00000553868 SLC47A2Q86VL8 602 aa15.33■□□□□ 0.04
SHMT2-208ENST00000553868 GLYCTKQ8IVS8 523 aa15.33■□□□□ 0.04
SHMT2-208ENST00000553868 C17orf53Q8N3J3 647 aaPredicted RBP15.33■□□□□ 0.04
SHMT2-208ENST00000553868 TOP6BLQ8N6T0 577 aa15.33■□□□□ 0.04
SHMT2-208ENST00000553868 APPL2Q8NEU8 664 aa15.33■□□□□ 0.04
SHMT2-208ENST00000553868 SYT11Q9BT88 431 aa15.33■□□□□ 0.04
SHMT2-208ENST00000553868 SMYD3Q9H7B4 428 aa15.33■□□□□ 0.04
SHMT2-208ENST00000553868 GOLGA2P5Q9HBQ8 144 aa15.33■□□□□ 0.04
SHMT2-208ENST00000553868 MIOSQ9NXC5 875 aa15.33■□□□□ 0.04
SHMT2-208ENST00000553868 NAGPAQ9UK23 515 aa15.33■□□□□ 0.04
SHMT2-208ENST00000553868 RAB23Q9ULC3 237 aa15.33■□□□□ 0.04
SHMT2-208ENST00000553868 INTUQ9ULD6 942 aa15.33■□□□□ 0.04
SHMT2-208ENST00000553868 PDCD11Q14690 1871 aaKnown RBP15.33■□□□□ 0.04
SHMT2-208ENST00000553868 DOCK6Q96HP0 2047 aa15.33■□□□□ 0.04
SHMT2-208ENST00000553868 DSPP15924 2871 aaKnown RBP15.32■□□□□ 0.04
SHMT2-208ENST00000553868 DDX3XO00571 662 aaKnown RBP eCLIP15.32■□□□□ 0.04
SHMT2-208ENST00000553868 PPEF2O14830 753 aa15.32■□□□□ 0.04
SHMT2-208ENST00000553868 THAP12O43422 761 aa15.32■□□□□ 0.04
SHMT2-208ENST00000553868 CILPO75339 1184 aa15.32■□□□□ 0.04
SHMT2-208ENST00000553868 TACC1O75410 805 aa15.32■□□□□ 0.04
SHMT2-208ENST00000553868 LILRA4P59901 499 aa15.32■□□□□ 0.04
SHMT2-208ENST00000553868 CYP27A1Q02318 531 aa15.32■□□□□ 0.04
SHMT2-208ENST00000553868 RING1Q06587 406 aa15.32■□□□□ 0.04
SHMT2-208ENST00000553868 IL31Q6EBC2 164 aa15.32■□□□□ 0.04
SHMT2-208ENST00000553868 LAIR1Q6GTX8 287 aa15.32■□□□□ 0.04
SHMT2-208ENST00000553868 PARM1Q6UWI2 310 aa15.32■□□□□ 0.04
SHMT2-208ENST00000553868 UNC93AQ86WB7 457 aa15.32■□□□□ 0.04
SHMT2-208ENST00000553868 REXO1L1PQ8IX06 675 aa15.32■□□□□ 0.04
SHMT2-208ENST00000553868 CMASQ8NFW8 434 aaPredicted RBP15.32■□□□□ 0.04
SHMT2-208ENST00000553868 SLC30A5Q8TAD4 765 aa15.32■□□□□ 0.04
SHMT2-208ENST00000553868 SMG7Q92540 1137 aaKnown RBP15.32■□□□□ 0.04
SHMT2-208ENST00000553868 FGF14Q92915 247 aa15.32■□□□□ 0.04
SHMT2-208ENST00000553868 SNX25Q9H3E2 840 aa15.32■□□□□ 0.04
SHMT2-208ENST00000553868 LTB4R2Q9NPC1 389 aa15.32■□□□□ 0.04
SHMT2-208ENST00000553868 PRMT8Q9NR22 394 aaPredicted RBP15.32■□□□□ 0.04
SHMT2-208ENST00000553868 REXO2Q9Y3B8 237 aaKnown RBP15.32■□□□□ 0.04
SHMT2-208ENST00000553868 CEP83Q9Y592 693 aa15.32■□□□□ 0.04
SHMT2-208ENST00000553868 CASTOR2A6NHX0 329 aa15.31■□□□□ 0.04
SHMT2-208ENST00000553868 B4GALT3O60512 393 aa15.31■□□□□ 0.04
SHMT2-208ENST00000553868 RETP07949 1114 aa15.31■□□□□ 0.04
SHMT2-208ENST00000553868 H2AFZP0C0S5 128 aa15.31■□□□□ 0.04
SHMT2-208ENST00000553868 SPATA31D3P0C874 917 aa15.31■□□□□ 0.04
SHMT2-208ENST00000553868 GZMAP12544 262 aa15.31■□□□□ 0.04
SHMT2-208ENST00000553868 TARSP26639 723 aaKnown RBP15.31■□□□□ 0.04
SHMT2-208ENST00000553868 RAP1GAPP47736 663 aa15.31■□□□□ 0.04
SHMT2-208ENST00000553868 CLCNKBP51801 687 aa15.31■□□□□ 0.04
SHMT2-208ENST00000553868 AFF1P51825 1210 aaKnown RBP15.31■□□□□ 0.04
SHMT2-208ENST00000553868 CDH8P55286 799 aa15.31■□□□□ 0.04
SHMT2-208ENST00000553868 STILQ15468 1287 aa15.31■□□□□ 0.04
SHMT2-208ENST00000553868 CSRP2Q16527 193 aa15.31■□□□□ 0.04
SHMT2-208ENST00000553868 UPP1Q16831 310 aa15.31■□□□□ 0.04
SHMT2-208ENST00000553868 SLC44A4Q53GD3 710 aa15.31■□□□□ 0.04
SHMT2-208ENST00000553868 TAF3Q5VWG9 929 aa15.31■□□□□ 0.04
SHMT2-208ENST00000553868 DSTYKQ6XUX3 929 aa15.31■□□□□ 0.04
SHMT2-208ENST00000553868 SPATA31D4Q6ZUB0 917 aa15.31■□□□□ 0.04
SHMT2-208ENST00000553868 H2AFVQ71UI9 128 aa15.31■□□□□ 0.04
SHMT2-208ENST00000553868 TMEM86AQ8N2M4 240 aa15.31■□□□□ 0.04
SHMT2-208ENST00000553868 LNX1Q8TBB1 728 aaPredicted RBP15.31■□□□□ 0.04
SHMT2-208ENST00000553868 SPATA18Q8TC71 538 aa15.31■□□□□ 0.04
SHMT2-208ENST00000553868 SLC20A1Q8WUM9 679 aa15.31■□□□□ 0.04
SHMT2-208ENST00000553868 ZNF707Q96C28 371 aaPredicted RBP15.31■□□□□ 0.04
SHMT2-208ENST00000553868 TMEM176AQ96HP8 235 aa15.31■□□□□ 0.04
SHMT2-208ENST00000553868 NT5C1AQ9BXI3 368 aa15.31■□□□□ 0.04
SHMT2-208ENST00000553868 EMILIN2Q9BXX0 1053 aa15.31■□□□□ 0.04
SHMT2-208ENST00000553868 SDCBP2Q9H190 292 aa15.31■□□□□ 0.04
SHMT2-208ENST00000553868 NRDE2Q9H7Z3 1164 aa15.31■□□□□ 0.04
SHMT2-208ENST00000553868 DNAJB4Q9UDY4 337 aa15.31■□□□□ 0.04
SHMT2-208ENST00000553868 LHX6Q9UPM6 363 aa15.31■□□□□ 0.04
SHMT2-208ENST00000553868 LAMA5O15230 3695 aa15.31■□□□□ 0.04
SHMT2-208ENST00000553868 LOC400499M0QZD8 3231 aa15.3■□□□□ 0.04
SHMT2-208ENST00000553868 SRRM3A6NNA2 597 aaPredicted RBP15.3■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms