RNA–Protein interactions for RNA: ENST00000553403.1

CCDC88C-205, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,651 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-205ENST00000553403 ATF2P15336 505 aa27.62■■■□□ 2.01
CCDC88C-205ENST00000553403 DESP17661 470 aa27.62■■■□□ 2.01
CCDC88C-205ENST00000553403 PMS2P54278 862 aa27.62■■■□□ 2.01
CCDC88C-205ENST00000553403 SLMAPQ14BN4 828 aa27.62■■■□□ 2.01
CCDC88C-205ENST00000553403 ZNF365Q70YC5 407 aa27.62■■■□□ 2.01
CCDC88C-205ENST00000553403 TMEM86AQ8N2M4 240 aa27.62■■■□□ 2.01
CCDC88C-205ENST00000553403 TTC13Q8NBP0 860 aa27.62■■■□□ 2.01
CCDC88C-205ENST00000553403 CCHCR1Q8TD31 782 aa27.62■■■□□ 2.01
CCDC88C-205ENST00000553403 NKD2Q969F2 451 aaPredicted RBP27.62■■■□□ 2.01
CCDC88C-205ENST00000553403 ARL8AQ96BM9 186 aa27.62■■■□□ 2.01
CCDC88C-205ENST00000553403 SENP8Q96LD8 212 aa27.62■■■□□ 2.01
CCDC88C-205ENST00000553403 TSEN34Q9BSV6 310 aaKnown RBP27.62■■■□□ 2.01
CCDC88C-205ENST00000553403 PCSK1NQ9UHG2 260 aa27.62■■■□□ 2.01
CCDC88C-205ENST00000553403 SKIP12755 728 aa27.61■■■□□ 2.01
CCDC88C-205ENST00000553403 BYSLQ13895 437 aaKnown RBP27.61■■■□□ 2.01
CCDC88C-205ENST00000553403 SMTNL2Q2TAL5 461 aa27.61■■■□□ 2.01
CCDC88C-205ENST00000553403 CCDC14Q49A88 953 aa27.61■■■□□ 2.01
CCDC88C-205ENST00000553403 TTMPQ5BVD1 217 aa27.61■■■□□ 2.01
CCDC88C-205ENST00000553403 WSCD1Q658N2 575 aa27.61■■■□□ 2.01
CCDC88C-205ENST00000553403 BBS12Q6ZW61 710 aa27.61■■■□□ 2.01
CCDC88C-205ENST00000553403 FAM76AQ8TAV0 307 aa27.61■■■□□ 2.01
CCDC88C-205ENST00000553403 SLC2A14Q8TDB8 520 aa27.61■■■□□ 2.01
CCDC88C-205ENST00000553403 OSBPL7Q9BZF2 842 aa27.61■■■□□ 2.01
CCDC88C-205ENST00000553403 UBN1Q9NPG3 1134 aa27.61■■■□□ 2.01
CCDC88C-205ENST00000553403 A0A0U1RQF3 1178 aa27.6■■■□□ 2.01
CCDC88C-205ENST00000553403 XPO1O14980 1071 aaKnown RBP27.6■■■□□ 2.01
CCDC88C-205ENST00000553403 MGEA5O60502 916 aa27.6■■■□□ 2.01
CCDC88C-205ENST00000553403 KRT14P02533 472 aa27.6■■■□□ 2.01
CCDC88C-205ENST00000553403 KCNT1Q5JUK3 1230 aa27.6■■■□□ 2.01
CCDC88C-205ENST00000553403 RHBDF2Q6PJF5 856 aa27.6■■■□□ 2.01
CCDC88C-205ENST00000553403 SLC26A9Q7LBE3 791 aa27.6■■■□□ 2.01
CCDC88C-205ENST00000553403 SCUBE3Q8IX30 993 aa27.6■■■□□ 2.01
CCDC88C-205ENST00000553403 KCTD6Q8NC69 237 aa27.6■■■□□ 2.01
CCDC88C-205ENST00000553403 PGBD4Q96DM1 585 aa27.6■■■□□ 2.01
CCDC88C-205ENST00000553403 TSPYL1Q9H0U9 437 aa27.6■■■□□ 2.01
CCDC88C-205ENST00000553403 TRMT13Q9NUP7 481 aaKnown RBP27.6■■■□□ 2.01
CCDC88C-205ENST00000553403 DNPEPQ9ULA0 475 aa27.6■■■□□ 2.01
CCDC88C-205ENST00000553403 PTPN1P18031 435 aaKnown RBP27.59■■■□□ 2.01
CCDC88C-205ENST00000553403 SCNN1GP51170 649 aa27.59■■■□□ 2.01
CCDC88C-205ENST00000553403 VCPP55072 806 aaKnown RBP27.59■■■□□ 2.01
CCDC88C-205ENST00000553403 EIF3BP55884 814 aaKnown RBP27.59■■■□□ 2.01
CCDC88C-205ENST00000553403 CEP85LQ5SZL2 805 aa27.59■■■□□ 2.01
CCDC88C-205ENST00000553403 PABPC3Q9H361 631 aaKnown RBP27.59■■■□□ 2.01
CCDC88C-205ENST00000553403 RSAD1Q9HA92 442 aa27.59■■■□□ 2.01
CCDC88C-205ENST00000553403 GOLGA6L10A6NI86 522 aa27.59■■■□□ 2.01
CCDC88C-205ENST00000553403 PRPSAP2O60256 369 aa27.59■■■□□ 2.01
CCDC88C-205ENST00000553403 GRAP2O75791 330 aa27.59■■■□□ 2.01
CCDC88C-205ENST00000553403 ENDOD1O94919 500 aa27.59■■■□□ 2.01
CCDC88C-205ENST00000553403 KLRC2P26717 231 aa27.59■■■□□ 2.01
CCDC88C-205ENST00000553403 SDC4P31431 198 aa27.59■■■□□ 2.01
CCDC88C-205ENST00000553403 ADCY8P40145 1251 aa27.59■■■□□ 2.01
CCDC88C-205ENST00000553403 LHX1P48742 406 aa27.59■■■□□ 2.01
CCDC88C-205ENST00000553403 C15orf59Q2T9L4 293 aaPredicted RBP27.59■■■□□ 2.01
CCDC88C-205ENST00000553403 TEKT4Q8WW24 435 aa27.59■■■□□ 2.01
CCDC88C-205ENST00000553403 GLT1D1Q96MS3 346 aa27.59■■■□□ 2.01
CCDC88C-205ENST00000553403 PEBP4Q96S96 227 aa27.59■■■□□ 2.01
CCDC88C-205ENST00000553403 FAM118BQ9BPY3 351 aa27.59■■■□□ 2.01
CCDC88C-205ENST00000553403 DUSP16Q9BY84 665 aa27.59■■■□□ 2.01
CCDC88C-205ENST00000553403 TMBIM4Q9HC24 238 aa27.59■■■□□ 2.01
CCDC88C-205ENST00000553403 ZKSCAN7Q9P0L1 754 aaPredicted RBP27.59■■■□□ 2.01
CCDC88C-205ENST00000553403 ITGAVP06756 1048 aa27.58■■■□□ 2.01
CCDC88C-205ENST00000553403 RARGP13631 454 aa27.58■■■□□ 2.01
CCDC88C-205ENST00000553403 TKTP29401 623 aaKnown RBP27.58■■■□□ 2.01
CCDC88C-205ENST00000553403 PTPN9P43378 593 aa27.58■■■□□ 2.01
CCDC88C-205ENST00000553403 CLCNKBP51801 687 aa27.58■■■□□ 2.01
CCDC88C-205ENST00000553403 AFF1P51825 1210 aaKnown RBP27.58■■■□□ 2.01
CCDC88C-205ENST00000553403 SLC8A3P57103 927 aa27.58■■■□□ 2.01
CCDC88C-205ENST00000553403 OASLQ15646 514 aaKnown RBP27.58■■■□□ 2.01
CCDC88C-205ENST00000553403 BOLA3Q53S33 107 aa27.58■■■□□ 2.01
CCDC88C-205ENST00000553403 CYP4V2Q6ZWL3 525 aaPredicted RBP27.58■■■□□ 2.01
CCDC88C-205ENST00000553403 GSTA5Q7RTV2 222 aa27.58■■■□□ 2.01
CCDC88C-205ENST00000553403 ALLCQ8N6M5 410 aa27.58■■■□□ 2.01
CCDC88C-205ENST00000553403 SLC35B2Q8TB61 432 aa27.58■■■□□ 2.01
CCDC88C-205ENST00000553403 HSPH1Q92598 858 aa27.58■■■□□ 2.01
CCDC88C-205ENST00000553403 ZNF148Q9UQR1 794 aa27.58■■■□□ 2.01
CCDC88C-205ENST00000553403 TP73O15350 636 aa27.57■■■□□ 2
CCDC88C-205ENST00000553403 NUDT17P0C025 328 aa27.57■■■□□ 2
CCDC88C-205ENST00000553403 PAX3P23760 479 aa27.57■■■□□ 2
CCDC88C-205ENST00000553403 ARSEP51690 589 aa27.57■■■□□ 2
CCDC88C-205ENST00000553403 ZNF844Q08AG5 666 aa27.57■■■□□ 2
CCDC88C-205ENST00000553403 TAF5Q15542 800 aa27.57■■■□□ 2
CCDC88C-205ENST00000553403 TRIP13Q15645 432 aaPredicted RBP27.57■■■□□ 2
CCDC88C-205ENST00000553403 SH3PXD2AQ5TCZ1 1133 aa27.57■■■□□ 2
CCDC88C-205ENST00000553403 FUKQ8N0W3 1084 aa27.57■■■□□ 2
CCDC88C-205ENST00000553403 SPATA18Q8TC71 538 aa27.57■■■□□ 2
CCDC88C-205ENST00000553403 CFAP57Q96MR6 1250 aa27.57■■■□□ 2
CCDC88C-205ENST00000553403 TBCBQ99426 244 aa27.57■■■□□ 2
CCDC88C-205ENST00000553403 ADAM2Q99965 735 aa27.57■■■□□ 2
CCDC88C-205ENST00000553403 B3GNT5Q9BYG0 378 aa27.57■■■□□ 2
CCDC88C-205ENST00000553403 EPB41L4BQ9H329 900 aa27.57■■■□□ 2
CCDC88C-205ENST00000553403 TRIM17Q9Y577 477 aa27.57■■■□□ 2
CCDC88C-205ENST00000553403 HMGB1P1B2RPK0 211 aaPredicted RBP27.56■■■□□ 2
CCDC88C-205ENST00000553403 CST8O60676 142 aa27.56■■■□□ 2
CCDC88C-205ENST00000553403 MYZAPP0CAP1 466 aa27.56■■■□□ 2
CCDC88C-205ENST00000553403 DSTYKQ6XUX3 929 aa27.56■■■□□ 2
CCDC88C-205ENST00000553403 DDX43Q9NXZ2 648 aaKnown RBP27.56■■■□□ 2
CCDC88C-205ENST00000553403 ANAPC5Q9UJX4 755 aa27.56■■■□□ 2
CCDC88C-205ENST00000553403 ITGA8P53708 1063 aa27.56■■■□□ 2
CCDC88C-205ENST00000553403 PDK2Q15119 407 aa27.56■■■□□ 2
CCDC88C-205ENST00000553403 UPP1Q16831 310 aa27.56■■■□□ 2
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms