RNA–Protein interactions for RNA: ENST00000552480.1

CACNB3-223, Transcript of calcium voltage-gated channel auxiliary subunit beta 3, human

TSL 3

Gene CACNB3, Length 927 nt, Biotype retained intron, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CACNB3-223	ENST00000552480	LIN28B	Q6ZN17	250 aa	Known RBP eCLIP	13.32	□□□□□ -0.28
CACNB3-223	ENST00000552480	C4orf50	Q6ZRC1	276 aa		13.32	□□□□□ -0.28
CACNB3-223	ENST00000552480	CCDC50	Q8IVM0	306 aa		13.32	□□□□□ -0.28
CACNB3-223	ENST00000552480	DCP1B	Q8IZD4	617 aa	Known RBP	13.32	□□□□□ -0.28
CACNB3-223	ENST00000552480	SIX6OS1	Q8N1H7	587 aa		13.32	□□□□□ -0.28
CACNB3-223	ENST00000552480	ARFGAP1	Q8N6T3	406 aa		13.32	□□□□□ -0.28
CACNB3-223	ENST00000552480	CLEC4C	Q8WTT0	213 aa		13.32	□□□□□ -0.28
CACNB3-223	ENST00000552480	TRIM43	Q96BQ3	446 aa	Predicted RBP	13.32	□□□□□ -0.28
CACNB3-223	ENST00000552480	TMEM209	Q96SK2	561 aa		13.32	□□□□□ -0.28
CACNB3-223	ENST00000552480	NCAPG	Q9BPX3	1015 aa		13.32	□□□□□ -0.28
CACNB3-223	ENST00000552480	ZCWPW1	Q9H0M4	648 aa		13.32	□□□□□ -0.28
CACNB3-223	ENST00000552480	LRRC4	Q9HBW1	653 aa		13.32	□□□□□ -0.28
CACNB3-223	ENST00000552480	CSNK1G1	Q9HCP0	422 aa		13.32	□□□□□ -0.28
CACNB3-223	ENST00000552480	SLTM	Q9NWH9	1034 aa	Known RBP eCLIP	13.32	□□□□□ -0.28
CACNB3-223	ENST00000552480	MARCH5	Q9NX47	278 aa		13.32	□□□□□ -0.28
CACNB3-223	ENST00000552480	CCDC151	A5D8V7	595 aa		13.31	□□□□□ -0.28
CACNB3-223	ENST00000552480	HHLA1	C9JL84	531 aa		13.31	□□□□□ -0.28
CACNB3-223	ENST00000552480	EFCAB14	O75071	495 aa		13.31	□□□□□ -0.28
CACNB3-223	ENST00000552480	PHF2	O75151	1096 aa		13.31	□□□□□ -0.28
CACNB3-223	ENST00000552480	DAB1	O75553	588 aa		13.31	□□□□□ -0.28
CACNB3-223	ENST00000552480	GALT	P07902	379 aa		13.31	□□□□□ -0.28
CACNB3-223	ENST00000552480	SDC4	P31431	198 aa		13.31	□□□□□ -0.28
CACNB3-223	ENST00000552480	PTPN7	P35236	360 aa		13.31	□□□□□ -0.28
CACNB3-223	ENST00000552480	VSNL1	P62760	191 aa		13.31	□□□□□ -0.28
CACNB3-223	ENST00000552480	MRPS5	P82675	430 aa	Known RBP	13.31	□□□□□ -0.28
CACNB3-223	ENST00000552480	ADCY1	Q08828	1119 aa		13.31	□□□□□ -0.28
CACNB3-223	ENST00000552480	CCDC14	Q49A88	953 aa		13.31	□□□□□ -0.28
CACNB3-223	ENST00000552480	LRRTM3	Q86VH5	581 aa		13.31	□□□□□ -0.28
CACNB3-223	ENST00000552480	C12orf50	Q8NA57	414 aa	Predicted RBP	13.31	□□□□□ -0.28
CACNB3-223	ENST00000552480	ZMIZ2	Q8NF64	920 aa		13.31	□□□□□ -0.28
CACNB3-223	ENST00000552480	CCDC26	Q8TAB7	109 aa		13.31	□□□□□ -0.28
CACNB3-223	ENST00000552480	SLITRK1	Q96PX8	696 aa		13.31	□□□□□ -0.28
CACNB3-223	ENST00000552480	DDX47	Q9H0S4	455 aa	Known RBP	13.31	□□□□□ -0.28
CACNB3-223	ENST00000552480	DMAP1	Q9NPF5	467 aa	Predicted RBP	13.31	□□□□□ -0.28
CACNB3-223	ENST00000552480	PRDM5	Q9NQX1	630 aa	Predicted RBP	13.31	□□□□□ -0.28
CACNB3-223	ENST00000552480	TMLHE	Q9NVH6	421 aa		13.31	□□□□□ -0.28
CACNB3-223	ENST00000552480	STIM2	Q9P246	746 aa		13.31	□□□□□ -0.28
CACNB3-223	ENST00000552480	NR2E1	Q9Y466	385 aa		13.31	□□□□□ -0.28
CACNB3-223	ENST00000552480	SF3B1	O75533	1304 aa	Known RBP eCLIP	13.31	□□□□□ -0.28
CACNB3-223	ENST00000552480	TET1	Q8NFU7	2136 aa		13.31	□□□□□ -0.28
CACNB3-223	ENST00000552480	NLRC5	Q86WI3	1866 aa		13.31	□□□□□ -0.28
CACNB3-223	ENST00000552480	COL4A6	Q14031	1691 aa		13.31	□□□□□ -0.28
CACNB3-223	ENST00000552480	SART1	O43290	800 aa	Known RBP	13.3	□□□□□ -0.28
CACNB3-223	ENST00000552480	RAD51C	O43502	376 aa		13.3	□□□□□ -0.28
CACNB3-223	ENST00000552480	HSF2BP	O75031	334 aa		13.3	□□□□□ -0.28
CACNB3-223	ENST00000552480	ERLIN1	O75477	346 aa		13.3	□□□□□ -0.28
CACNB3-223	ENST00000552480	DGKI	O75912	1065 aa		13.3	□□□□□ -0.28
CACNB3-223	ENST00000552480	TRUB2	O95900	331 aa	Known RBP	13.3	□□□□□ -0.28
CACNB3-223	ENST00000552480	AMH	P03971	560 aa		13.3	□□□□□ -0.28
CACNB3-223	ENST00000552480	GLI1	P08151	1106 aa		13.3	□□□□□ -0.28
CACNB3-223	ENST00000552480	RAG1	P15918	1043 aa		13.3	□□□□□ -0.28
CACNB3-223	ENST00000552480	FGFR3	P22607	806 aa		13.3	□□□□□ -0.28
CACNB3-223	ENST00000552480	BDNF	P23560	247 aa		13.3	□□□□□ -0.28
CACNB3-223	ENST00000552480	ITGB8	P26012	769 aa		13.3	□□□□□ -0.28
CACNB3-223	ENST00000552480	TNFRSF8	P28908	595 aa		13.3	□□□□□ -0.28
CACNB3-223	ENST00000552480	MIP	P30301	263 aa		13.3	□□□□□ -0.28
CACNB3-223	ENST00000552480	CHRNA3	P32297	505 aa		13.3	□□□□□ -0.28
CACNB3-223	ENST00000552480	CLCN6	P51797	869 aa		13.3	□□□□□ -0.28
CACNB3-223	ENST00000552480	TKTL1	P51854	596 aa		13.3	□□□□□ -0.28
CACNB3-223	ENST00000552480	CACNA2D1	P54289	1103 aa		13.3	□□□□□ -0.28
CACNB3-223	ENST00000552480	BCAR1	P56945	870 aa		13.3	□□□□□ -0.28
CACNB3-223	ENST00000552480	MRPL58	Q14197	206 aa	Known RBP	13.3	□□□□□ -0.28
CACNB3-223	ENST00000552480	SMC1A	Q14683	1233 aa	Known RBP	13.3	□□□□□ -0.28
CACNB3-223	ENST00000552480	SIX1	Q15475	284 aa	Predicted RBP	13.3	□□□□□ -0.28
CACNB3-223	ENST00000552480	CYP1B1	Q16678	543 aa		13.3	□□□□□ -0.28
CACNB3-223	ENST00000552480	C15orf59	Q2T9L4	293 aa	Predicted RBP	13.3	□□□□□ -0.28
CACNB3-223	ENST00000552480	ATP13A4	Q4VNC1	1196 aa		13.3	□□□□□ -0.28
CACNB3-223	ENST00000552480	ODF2	Q5BJF6	829 aa		13.3	□□□□□ -0.28
CACNB3-223	ENST00000552480	VARS2	Q5ST30	1063 aa	Known RBP	13.3	□□□□□ -0.28
CACNB3-223	ENST00000552480	TXNRD3NB	Q6F5E7	133 aa		13.3	□□□□□ -0.28
CACNB3-223	ENST00000552480	ZNF280D	Q6N043	979 aa		13.3	□□□□□ -0.28
CACNB3-223	ENST00000552480	MFSD5	Q6N075	450 aa		13.3	□□□□□ -0.28
CACNB3-223	ENST00000552480	FUT10	Q6P4F1	479 aa		13.3	□□□□□ -0.28
CACNB3-223	ENST00000552480	SPOCD1	Q6ZMY3	1216 aa		13.3	□□□□□ -0.28
CACNB3-223	ENST00000552480	ADAT2	Q7Z6V5	191 aa	Known RBP	13.3	□□□□□ -0.28
CACNB3-223	ENST00000552480	SPATA2L	Q8IUW3	424 aa	Predicted RBP	13.3	□□□□□ -0.28
CACNB3-223	ENST00000552480	TMEM199	Q8N511	208 aa		13.3	□□□□□ -0.28
CACNB3-223	ENST00000552480	PRELID2	Q8N945	189 aa		13.3	□□□□□ -0.28
CACNB3-223	ENST00000552480	HNRNPLL	Q8WVV9	542 aa	Known RBP	13.3	□□□□□ -0.28
CACNB3-223	ENST00000552480	CFAP57	Q96MR6	1250 aa		13.3	□□□□□ -0.28
CACNB3-223	ENST00000552480	RUNDC3B	Q96NL0	473 aa		13.3	□□□□□ -0.28
CACNB3-223	ENST00000552480	C11orf84	Q9BUA3	381 aa	Predicted RBP	13.3	□□□□□ -0.28
CACNB3-223	ENST00000552480	DDX23	Q9BUQ8	820 aa	Known RBP	13.3	□□□□□ -0.28
CACNB3-223	ENST00000552480	ZWILCH	Q9H900	591 aa		13.3	□□□□□ -0.28
CACNB3-223	ENST00000552480	PNPLA8	Q9NP80	782 aa		13.3	□□□□□ -0.28
CACNB3-223	ENST00000552480	CNGB3	Q9NQW8	809 aa		13.3	□□□□□ -0.28
CACNB3-223	ENST00000552480	TMEM30A	Q9NV96	361 aa		13.3	□□□□□ -0.28
CACNB3-223	ENST00000552480	FASTKD2	Q9NYY8	710 aa	Known RBP eCLIP	13.3	□□□□□ -0.28
CACNB3-223	ENST00000552480	HCST	Q9UBK5	93 aa		13.3	□□□□□ -0.28
CACNB3-223	ENST00000552480	DMGDH	Q9UI17	866 aa	Known RBP	13.3	□□□□□ -0.28
CACNB3-223	ENST00000552480	USP18	Q9UMW8	372 aa		13.3	□□□□□ -0.28
CACNB3-223	ENST00000552480	PATJ	Q8NI35	1801 aa		13.29	□□□□□ -0.28
CACNB3-223	ENST00000552480	TCRBV7S2A1N4T	A0A589	114 aa		13.29	□□□□□ -0.28
CACNB3-223	ENST00000552480	OR6C75	A6NL08	312 aa		13.29	□□□□□ -0.28
CACNB3-223	ENST00000552480	PI4K2B	G5E9Z4	385 aa		13.29	□□□□□ -0.28
CACNB3-223	ENST00000552480		H7C4K7	107 aa		13.29	□□□□□ -0.28
CACNB3-223	ENST00000552480	BAIAP3	O94812	1187 aa		13.29	□□□□□ -0.28
CACNB3-223	ENST00000552480	HEXIM1	O94992	359 aa	Known RBP	13.29	□□□□□ -0.28
CACNB3-223	ENST00000552480	UPP2	O95045	317 aa		13.29	□□□□□ -0.28
CACNB3-223	ENST00000552480	RARA	P10276	462 aa		13.29	□□□□□ -0.28

Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms