RNA–Protein interactions for RNA: ENST00000547825.5

LIMA1-203, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,920 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-203ENST00000547825 ENTPD5O75356 428 aa5.74□□□□□ -1.49
LIMA1-203ENST00000547825 USP2O75604 605 aaPredicted RBP5.74□□□□□ -1.49
LIMA1-203ENST00000547825 MFAP3P55082 362 aa5.74□□□□□ -1.49
LIMA1-203ENST00000547825 NOP14P78316 857 aaKnown RBP5.74□□□□□ -1.49
LIMA1-203ENST00000547825 FOXB2Q5VYV0 432 aa5.74□□□□□ -1.49
LIMA1-203ENST00000547825 FAM228AQ86W67 206 aa5.74□□□□□ -1.49
LIMA1-203ENST00000547825 KIAA0895Q8NCT3 520 aa5.74□□□□□ -1.49
LIMA1-203ENST00000547825 B4GALNT2Q8NHY0 566 aa5.74□□□□□ -1.49
LIMA1-203ENST00000547825 ACSF2Q96CM8 615 aaPredicted RBP5.74□□□□□ -1.49
LIMA1-203ENST00000547825 BRINP2Q9C0B6 783 aa5.74□□□□□ -1.49
LIMA1-203ENST00000547825 MRPL46Q9H2W6 279 aaKnown RBP5.74□□□□□ -1.49
LIMA1-203ENST00000547825 SAGE1Q9NXZ1 904 aa5.74□□□□□ -1.49
LIMA1-203ENST00000547825 COX16Q9P0S2 106 aa5.74□□□□□ -1.49
LIMA1-203ENST00000547825 SEC23IPQ9Y6Y8 1000 aaKnown RBP5.74□□□□□ -1.49
LIMA1-203ENST00000547825 ADM5C9JUS6 153 aa5.74□□□□□ -1.49
LIMA1-203ENST00000547825 TLR2O60603 784 aa5.74□□□□□ -1.49
LIMA1-203ENST00000547825 HOXD8P13378 290 aaPredicted RBP5.74□□□□□ -1.49
LIMA1-203ENST00000547825 MARK3P27448 753 aa5.74□□□□□ -1.49
LIMA1-203ENST00000547825 CAP1Q01518 475 aa5.74□□□□□ -1.49
LIMA1-203ENST00000547825 KRT80Q6KB66 452 aa5.74□□□□□ -1.49
LIMA1-203ENST00000547825 DPY19L2P1Q6NXN4 242 aa5.74□□□□□ -1.49
LIMA1-203ENST00000547825 BZW1Q7L1Q6 419 aaKnown RBP5.74□□□□□ -1.49
LIMA1-203ENST00000547825 TMC3Q7Z5M5 1100 aa5.74□□□□□ -1.49
LIMA1-203ENST00000547825 FAM35AQ86V20 835 aa5.74□□□□□ -1.49
LIMA1-203ENST00000547825 LCA5Q86VQ0 697 aa5.74□□□□□ -1.49
LIMA1-203ENST00000547825 RFX6Q8HWS3 928 aa5.74□□□□□ -1.49
LIMA1-203ENST00000547825 MAP7D3Q8IWC1 876 aa5.74□□□□□ -1.49
LIMA1-203ENST00000547825 SLFN12Q8IYM2 578 aa5.74□□□□□ -1.49
LIMA1-203ENST00000547825 TBC1D22AQ8WUA7 517 aa5.74□□□□□ -1.49
LIMA1-203ENST00000547825 RPS6KC1Q96S38 1066 aa5.74□□□□□ -1.49
LIMA1-203ENST00000547825 C7orf25Q9BPX7 421 aa5.74□□□□□ -1.49
LIMA1-203ENST00000547825 SEPT10Q9P0V9 454 aa5.74□□□□□ -1.49
LIMA1-203ENST00000547825 PCSK1NQ9UHG2 260 aa5.74□□□□□ -1.49
LIMA1-203ENST00000547825 DAGLAQ9Y4D2 1042 aa5.74□□□□□ -1.49
LIMA1-203ENST00000547825 MIF4GDA9UHW6 222 aaKnown RBP5.73□□□□□ -1.49
LIMA1-203ENST00000547825 CDH16O75309 829 aa5.73□□□□□ -1.49
LIMA1-203ENST00000547825 CPP00450 1065 aa5.73□□□□□ -1.49
LIMA1-203ENST00000547825 PDGFRBP09619 1106 aa5.73□□□□□ -1.49
LIMA1-203ENST00000547825 PRLRP16471 622 aa5.73□□□□□ -1.49
LIMA1-203ENST00000547825 SOX5P35711 763 aa5.73□□□□□ -1.49
LIMA1-203ENST00000547825 ITGA8P53708 1063 aa5.73□□□□□ -1.49
LIMA1-203ENST00000547825 PEX3P56589 373 aa5.73□□□□□ -1.49
LIMA1-203ENST00000547825 MRPS35P82673 323 aaKnown RBP5.73□□□□□ -1.49
LIMA1-203ENST00000547825 ZNF800Q2TB10 664 aaPredicted RBP eCLIP5.73□□□□□ -1.49
LIMA1-203ENST00000547825 PERM1Q5SV97 790 aa5.73□□□□□ -1.49
LIMA1-203ENST00000547825 YOD1Q5VVQ6 348 aaPredicted RBP5.73□□□□□ -1.49
LIMA1-203ENST00000547825 CENPUQ71F23 418 aa5.73□□□□□ -1.49
LIMA1-203ENST00000547825 SYT9Q86SS6 491 aa5.73□□□□□ -1.49
LIMA1-203ENST00000547825 MTDHQ86UE4 582 aaKnown RBP5.73□□□□□ -1.49
LIMA1-203ENST00000547825 PDIK1LQ8N165 341 aa5.73□□□□□ -1.49
LIMA1-203ENST00000547825 ATP2A3Q93084 1043 aa5.73□□□□□ -1.49
LIMA1-203ENST00000547825 PWWP2AQ96N64 755 aa5.73□□□□□ -1.49
LIMA1-203ENST00000547825 GLIS2Q9BZE0 524 aaPredicted RBP5.73□□□□□ -1.49
LIMA1-203ENST00000547825 NEUROG2Q9H2A3 272 aa5.73□□□□□ -1.49
LIMA1-203ENST00000547825 ZNF70Q9UC06 446 aaPredicted RBP5.73□□□□□ -1.49
LIMA1-203ENST00000547825 SOX13Q9UN79 622 aa5.73□□□□□ -1.49
LIMA1-203ENST00000547825 FAM47DPA6NHR8 397 aa5.73□□□□□ -1.49
LIMA1-203ENST00000547825 RSPH10B2B2RC85 870 aa5.73□□□□□ -1.49
LIMA1-203ENST00000547825 C2CD2LO14523 706 aa5.73□□□□□ -1.49
LIMA1-203ENST00000547825 COPEO14579 308 aa5.73□□□□□ -1.49
LIMA1-203ENST00000547825 ST8SIA5O15466 376 aa5.73□□□□□ -1.49
LIMA1-203ENST00000547825 SLC37A4O43826 429 aa5.73□□□□□ -1.49
LIMA1-203ENST00000547825 S100BP04271 92 aaPredicted RBP5.73□□□□□ -1.49
LIMA1-203ENST00000547825 KRT16P08779 473 aa5.73□□□□□ -1.49
LIMA1-203ENST00000547825 RSPH10BP0C881 870 aa5.73□□□□□ -1.49
LIMA1-203ENST00000547825 SLURP2P0DP57 97 aa5.73□□□□□ -1.49
LIMA1-203ENST00000547825 ETS2P15036 469 aa5.73□□□□□ -1.49
LIMA1-203ENST00000547825 POLR2BP30876 1174 aaKnown RBP5.73□□□□□ -1.49
LIMA1-203ENST00000547825 ARSEP51690 589 aa5.73□□□□□ -1.49
LIMA1-203ENST00000547825 MAPK7Q13164 816 aa5.73□□□□□ -1.49
LIMA1-203ENST00000547825 TRIP10Q15642 601 aa5.73□□□□□ -1.49
LIMA1-203ENST00000547825 P3H1Q32P28 736 aa5.73□□□□□ -1.49
LIMA1-203ENST00000547825 MMEL1Q495T6 779 aa5.73□□□□□ -1.49
LIMA1-203ENST00000547825 HSP90AA5PQ58FG0 334 aa5.73□□□□□ -1.49
LIMA1-203ENST00000547825 LVRNQ6Q4G3 990 aa5.73□□□□□ -1.49
LIMA1-203ENST00000547825 GALNT4Q8N4A0 578 aa5.73□□□□□ -1.49
LIMA1-203ENST00000547825 BBOF1Q8ND07 529 aa5.73□□□□□ -1.49
LIMA1-203ENST00000547825 CPA5Q8WXQ8 436 aa5.73□□□□□ -1.49
LIMA1-203ENST00000547825 ZNF837Q96EG3 531 aaPredicted RBP5.73□□□□□ -1.49
LIMA1-203ENST00000547825 NAP1L4Q99733 375 aaKnown RBP5.73□□□□□ -1.49
LIMA1-203ENST00000547825 ANO3Q9BYT9 981 aa5.73□□□□□ -1.49
LIMA1-203ENST00000547825 UBE2OQ9C0C9 1292 aaKnown RBP5.73□□□□□ -1.49
LIMA1-203ENST00000547825 INTS2Q9H0H0 1204 aaKnown RBP5.73□□□□□ -1.49
LIMA1-203ENST00000547825 DNAJC18Q9H819 358 aa5.73□□□□□ -1.49
LIMA1-203ENST00000547825 ADAM22Q9P0K1 906 aa5.73□□□□□ -1.49
LIMA1-203ENST00000547825 HEY2Q9UBP5 337 aa5.73□□□□□ -1.49
LIMA1-203ENST00000547825 MCM8Q9UJA3 840 aa5.73□□□□□ -1.49
LIMA1-203ENST00000547825 TRAF3IP3Q9Y228 551 aa5.73□□□□□ -1.49
LIMA1-203ENST00000547825 C2CD2Q9Y426 696 aa5.73□□□□□ -1.49
LIMA1-203ENST00000547825 EMSYQ7Z589 1322 aa5.73□□□□□ -1.49
LIMA1-203ENST00000547825 KIAA1217Q5T5P2 1943 aa5.73□□□□□ -1.49
LIMA1-203ENST00000547825 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP5.73□□□□□ -1.49
LIMA1-203ENST00000547825 NDC80O14777 642 aa5.73□□□□□ -1.49
LIMA1-203ENST00000547825 ATP5HO75947 161 aa5.73□□□□□ -1.49
LIMA1-203ENST00000547825 PCP11498 1178 aaKnown RBP5.73□□□□□ -1.49
LIMA1-203ENST00000547825 EEF1B2P24534 225 aaKnown RBP5.73□□□□□ -1.49
LIMA1-203ENST00000547825 L1CAMP32004 1257 aa5.73□□□□□ -1.49
LIMA1-203ENST00000547825 OSTNP61366 133 aa5.73□□□□□ -1.49
LIMA1-203ENST00000547825 GABPAQ06546 454 aa5.73□□□□□ -1.49
LIMA1-203ENST00000547825 DHX34Q14147 1143 aaKnown RBP5.73□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms