RNA–Protein interactions for RNA: ENST00000546744.5

PTCH1-212, Transcript of patched 1, humanhuman

TSL 2

Gene PTCH1, Length 4,389 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-212ENST00000546744 ATP1A4Q13733 1029 aa13.25□□□□□ -0.29
PTCH1-212ENST00000546744 PDK2Q15119 407 aa13.25□□□□□ -0.29
PTCH1-212ENST00000546744 CCDC85BQ15834 202 aaPredicted RBP13.25□□□□□ -0.29
PTCH1-212ENST00000546744 KRT73Q86Y46 540 aa13.25□□□□□ -0.29
PTCH1-212ENST00000546744 ZCCHC9Q8N567 271 aaKnown RBP13.25□□□□□ -0.29
PTCH1-212ENST00000546744 DHRSXQ8N5I4 330 aa13.25□□□□□ -0.29
PTCH1-212ENST00000546744 USP33Q8TEY7 942 aa13.25□□□□□ -0.29
PTCH1-212ENST00000546744 KAZALD1Q96I82 304 aa13.25□□□□□ -0.29
PTCH1-212ENST00000546744 KLF6Q99612 283 aaPredicted RBP13.25□□□□□ -0.29
PTCH1-212ENST00000546744 COA1Q9GZY4 146 aa13.25□□□□□ -0.29
PTCH1-212ENST00000546744 EHD4Q9H223 541 aa13.25□□□□□ -0.29
PTCH1-212ENST00000546744 TCF7L2Q9NQB0 619 aa13.25□□□□□ -0.29
PTCH1-212ENST00000546744 AVENQ9NQS1 362 aaPredicted RBP13.25□□□□□ -0.29
PTCH1-212ENST00000546744 SEC31BQ9NQW1 1179 aa13.25□□□□□ -0.29
PTCH1-212ENST00000546744 R3HDM2Q9Y2K5 976 aaKnown RBP13.25□□□□□ -0.29
PTCH1-212ENST00000546744 KCNJ2P63252 427 aa13.25□□□□□ -0.29
PTCH1-212ENST00000546744 TROAPQ12815 778 aa13.25□□□□□ -0.29
PTCH1-212ENST00000546744 AGAP9Q5VTM2 703 aa13.25□□□□□ -0.29
PTCH1-212ENST00000546744 CIAPIN1Q6FI81 312 aa13.25□□□□□ -0.29
PTCH1-212ENST00000546744 HDDC2Q7Z4H3 204 aa13.25□□□□□ -0.29
PTCH1-212ENST00000546744 TSPAN14Q8NG11 270 aa13.25□□□□□ -0.29
PTCH1-212ENST00000546744 C17orf50Q8WW18 174 aa13.25□□□□□ -0.29
PTCH1-212ENST00000546744 MCRS1Q96EZ8 462 aa13.25□□□□□ -0.29
PTCH1-212ENST00000546744 IFT43Q96FT9 208 aa13.25□□□□□ -0.29
PTCH1-212ENST00000546744 RIT2Q99578 217 aa13.25□□□□□ -0.29
PTCH1-212ENST00000546744 WDR12Q9GZL7 423 aaKnown RBP13.25□□□□□ -0.29
PTCH1-212ENST00000546744 ARHGEF38Q9NXL2 777 aa13.25□□□□□ -0.29
PTCH1-212ENST00000546744 USE1Q9NZ43 259 aa13.25□□□□□ -0.29
PTCH1-212ENST00000546744 PRPF19Q9UMS4 504 aaKnown RBP13.25□□□□□ -0.29
PTCH1-212ENST00000546744 TFR2Q9UP52 801 aa13.25□□□□□ -0.29
PTCH1-212ENST00000546744 COL14A1Q05707 1796 aaKnown RBP13.25□□□□□ -0.29
PTCH1-212ENST00000546744 ZNF197O14709 1029 aa13.25□□□□□ -0.29
PTCH1-212ENST00000546744 MAGEB2O15479 319 aa13.25□□□□□ -0.29
PTCH1-212ENST00000546744 CNOT3O75175 753 aaKnown RBP13.25□□□□□ -0.29
PTCH1-212ENST00000546744 KRT6AP02538 564 aa13.25□□□□□ -0.29
PTCH1-212ENST00000546744 KRT6BP04259 564 aa13.25□□□□□ -0.29
PTCH1-212ENST00000546744 JAK1P23458 1154 aa13.25□□□□□ -0.29
PTCH1-212ENST00000546744 NMT1P30419 496 aaKnown RBP13.25□□□□□ -0.29
PTCH1-212ENST00000546744 PHKA2P46019 1235 aa13.25□□□□□ -0.29
PTCH1-212ENST00000546744 TOB1P50616 345 aaPredicted RBP13.25□□□□□ -0.29
PTCH1-212ENST00000546744 AUHQ13825 339 aaKnown RBP13.25□□□□□ -0.29
PTCH1-212ENST00000546744 RRP1BQ14684 758 aaKnown RBP13.25□□□□□ -0.29
PTCH1-212ENST00000546744 PKN2Q16513 984 aaKnown RBP13.25□□□□□ -0.29
PTCH1-212ENST00000546744 ANO4Q32M45 955 aa13.25□□□□□ -0.29
PTCH1-212ENST00000546744 SPANXN2Q5MJ10 180 aa13.25□□□□□ -0.29
PTCH1-212ENST00000546744 C6orf10Q5SRN2 563 aa13.25□□□□□ -0.29
PTCH1-212ENST00000546744 LRRC8DQ7L1W4 858 aa13.25□□□□□ -0.29
PTCH1-212ENST00000546744 ZNF571Q7Z3V5 609 aaPredicted RBP13.25□□□□□ -0.29
PTCH1-212ENST00000546744 PTPRN2Q92932 1015 aa13.25□□□□□ -0.29
PTCH1-212ENST00000546744 LBHD1Q9BQE6 289 aaPredicted RBP13.25□□□□□ -0.29
PTCH1-212ENST00000546744 DCLK3Q9C098 648 aa13.25□□□□□ -0.29
PTCH1-212ENST00000546744 EXOSC4Q9NPD3 245 aaKnown RBP13.25□□□□□ -0.29
PTCH1-212ENST00000546744 PNPLA3Q9NST1 481 aa13.25□□□□□ -0.29
PTCH1-212ENST00000546744 TMEM260Q9NX78 707 aa13.25□□□□□ -0.29
PTCH1-212ENST00000546744 PCDHA3Q9Y5H8 950 aa13.25□□□□□ -0.29
PTCH1-212ENST00000546744 CAMTA2O94983 1202 aa13.24□□□□□ -0.29
PTCH1-212ENST00000546744 PDGFRAP16234 1089 aa13.24□□□□□ -0.29
PTCH1-212ENST00000546744 KRT6CP48668 564 aa13.24□□□□□ -0.29
PTCH1-212ENST00000546744 IFI35P80217 286 aaPredicted RBP13.24□□□□□ -0.29
PTCH1-212ENST00000546744 ARCQ7LC44 396 aa13.24□□□□□ -0.29
PTCH1-212ENST00000546744 BTBD9Q96Q07 612 aa13.24□□□□□ -0.29
PTCH1-212ENST00000546744 OSBPL11Q9BXB4 747 aa13.24□□□□□ -0.29
PTCH1-212ENST00000546744 PLEKHA5Q9HAU0 1116 aa13.24□□□□□ -0.29
PTCH1-212ENST00000546744 FEM1BQ9UK73 627 aa13.24□□□□□ -0.29
PTCH1-212ENST00000546744 WDR37Q9Y2I8 494 aa13.24□□□□□ -0.29
PTCH1-212ENST00000546744 USP17L15C9J2P7 530 aa13.24□□□□□ -0.29
PTCH1-212ENST00000546744 USP17L13C9JLJ4 530 aa13.24□□□□□ -0.29
PTCH1-212ENST00000546744 USP17L11C9JVI0 530 aa13.24□□□□□ -0.29
PTCH1-212ENST00000546744 USP17L18D6R9N7 530 aa13.24□□□□□ -0.29
PTCH1-212ENST00000546744 USP17L22D6RA61 530 aa13.24□□□□□ -0.29
PTCH1-212ENST00000546744 USP17L17D6RBQ6 530 aa13.24□□□□□ -0.29
PTCH1-212ENST00000546744 USP17L19D6RCP7 530 aa13.24□□□□□ -0.29
PTCH1-212ENST00000546744 USP17L20D6RJB6 530 aa13.24□□□□□ -0.29
PTCH1-212ENST00000546744 LSM8O95777 96 aaKnown RBP13.24□□□□□ -0.29
PTCH1-212ENST00000546744 CPA3P15088 417 aa13.24□□□□□ -0.29
PTCH1-212ENST00000546744 DNAJB2P25686 324 aa13.24□□□□□ -0.29
PTCH1-212ENST00000546744 RPL21P46778 160 aaKnown RBP13.24□□□□□ -0.29
PTCH1-212ENST00000546744 USP17L24Q0WX57 530 aa13.24□□□□□ -0.29
PTCH1-212ENST00000546744 BNIP1Q12981 228 aa13.24□□□□□ -0.29
PTCH1-212ENST00000546744 ZNF618Q5T7W0 954 aa13.24□□□□□ -0.29
PTCH1-212ENST00000546744 ARMC3Q5W041 872 aa13.24□□□□□ -0.29
PTCH1-212ENST00000546744 USP17L6PQ6QN14 398 aa13.24□□□□□ -0.29
PTCH1-212ENST00000546744 RRM2BQ7LG56 351 aa13.24□□□□□ -0.29
PTCH1-212ENST00000546744 OR6B3Q8NGW1 331 aa13.24□□□□□ -0.29
PTCH1-212ENST00000546744 RORBQ92753 470 aa13.24□□□□□ -0.29
PTCH1-212ENST00000546744 SLC10A4Q96EP9 437 aa13.24□□□□□ -0.29
PTCH1-212ENST00000546744 NINJ2Q9NZG7 142 aa13.24□□□□□ -0.29
PTCH1-212ENST00000546744 MARF1Q9Y4F3 1742 aaKnown RBP13.24□□□□□ -0.29
PTCH1-212ENST00000546744 RC3H1Q5TC82 1133 aaKnown RBP13.24□□□□□ -0.29
PTCH1-212ENST00000546744 FAM162AQ96A26 154 aa13.24□□□□□ -0.29
PTCH1-212ENST00000546744 IMPAD1Q9NX62 359 aa13.24□□□□□ -0.29
PTCH1-212ENST00000546744 FLT1P17948 1338 aa13.24□□□□□ -0.29
PTCH1-212ENST00000546744 SDR42E2A6NKP2 422 aa13.23□□□□□ -0.29
PTCH1-212ENST00000546744 APBA3O96018 575 aa13.23□□□□□ -0.29
PTCH1-212ENST00000546744 ANPEPP15144 967 aa13.23□□□□□ -0.29
PTCH1-212ENST00000546744 RXRGP48443 463 aa13.23□□□□□ -0.29
PTCH1-212ENST00000546744 MMRN1Q13201 1228 aa13.23□□□□□ -0.29
PTCH1-212ENST00000546744 MROH9Q5TGP6 573 aa13.23□□□□□ -0.29
PTCH1-212ENST00000546744 IFNEQ86WN2 208 aa13.23□□□□□ -0.29
PTCH1-212ENST00000546744 PDPRQ8NCN5 879 aa13.23□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 79.4 ms