RNA–Protein interactions for RNA: ENST00000545686.6

TDP1-204, Transcript of tyrosyl-DNA phosphodiesterase 1, humanhuman

TSL 1 (best)

Gene TDP1, Length 2,488 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1-204ENST00000545686 SLC9A2Q9UBY0 812 aa9.14□□□□□ -0.95
TDP1-204ENST00000545686 PGAP2Q9UHJ9 254 aa9.14□□□□□ -0.95
TDP1-204ENST00000545686 CHMP2BQ9UQN3 213 aa9.14□□□□□ -0.95
TDP1-204ENST00000545686 CTDP1Q9Y5B0 961 aaPredicted RBP9.14□□□□□ -0.95
TDP1-204ENST00000545686 TCRBV7S3A2A0A539 114 aa9.13□□□□□ -0.95
TDP1-204ENST00000545686 ANKRD33BA6NCL7 494 aa9.13□□□□□ -0.95
TDP1-204ENST00000545686 EIF4E1BA6NMX2 242 aaKnown RBP9.13□□□□□ -0.95
TDP1-204ENST00000545686 KBTBD13C9JR72 458 aa9.13□□□□□ -0.95
TDP1-204ENST00000545686 COPEO14579 308 aa9.13□□□□□ -0.95
TDP1-204ENST00000545686 CIB2O75838 187 aa9.13□□□□□ -0.95
TDP1-204ENST00000545686 PYGBP11216 843 aa9.13□□□□□ -0.95
TDP1-204ENST00000545686 STIP1P31948 543 aaKnown RBP9.13□□□□□ -0.95
TDP1-204ENST00000545686 ARL2P36404 184 aa9.13□□□□□ -0.95
TDP1-204ENST00000545686 CCNFP41002 786 aa9.13□□□□□ -0.95
TDP1-204ENST00000545686 ELK3P41970 407 aa9.13□□□□□ -0.95
TDP1-204ENST00000545686 EIF3EP60228 445 aaKnown RBP9.13□□□□□ -0.95
TDP1-204ENST00000545686 ACTR2P61160 394 aa9.13□□□□□ -0.95
TDP1-204ENST00000545686 YWHAEP62258 255 aaKnown RBP9.13□□□□□ -0.95
TDP1-204ENST00000545686 DYNLT1P63172 113 aa9.13□□□□□ -0.95
TDP1-204ENST00000545686 DPYSL3Q14195 570 aa9.13□□□□□ -0.95
TDP1-204ENST00000545686 KCNJ11Q14654 390 aa9.13□□□□□ -0.95
TDP1-204ENST00000545686 SURF1Q15526 300 aa9.13□□□□□ -0.95
TDP1-204ENST00000545686 DBN1Q16643 649 aa9.13□□□□□ -0.95
TDP1-204ENST00000545686 MTERF2Q49AM1 385 aa9.13□□□□□ -0.95
TDP1-204ENST00000545686 THEMIS2Q5TEJ8 643 aa9.13□□□□□ -0.95
TDP1-204ENST00000545686 ANGEL2Q5VTE6 544 aaKnown RBP9.13□□□□□ -0.95
TDP1-204ENST00000545686 WDTC1Q8N5D0 677 aa9.13□□□□□ -0.95
TDP1-204ENST00000545686 CMASQ8NFW8 434 aaPredicted RBP9.13□□□□□ -0.95
TDP1-204ENST00000545686 UCMAQ8WVF2 138 aa9.13□□□□□ -0.95
TDP1-204ENST00000545686 WDR60Q8WVS4 1066 aa9.13□□□□□ -0.95
TDP1-204ENST00000545686 KLF6Q99612 283 aaPredicted RBP9.13□□□□□ -0.95
TDP1-204ENST00000545686 NMUR2Q9GZQ4 415 aa9.13□□□□□ -0.95
TDP1-204ENST00000545686 TMEM39BQ9GZU3 492 aa9.13□□□□□ -0.95
TDP1-204ENST00000545686 LHX5Q9H2C1 402 aa9.13□□□□□ -0.95
TDP1-204ENST00000545686 DHX33Q9H6R0 707 aaKnown RBP9.13□□□□□ -0.95
TDP1-204ENST00000545686 GPAMQ9HCL2 828 aa9.13□□□□□ -0.95
TDP1-204ENST00000545686 CISHQ9NSE2 258 aa9.13□□□□□ -0.95
TDP1-204ENST00000545686 CPSF2Q9P2I0 782 aaKnown RBP9.13□□□□□ -0.95
TDP1-204ENST00000545686 C2CD2Q9Y426 696 aa9.13□□□□□ -0.95
TDP1-204ENST00000545686 EP400Q96L91 3159 aa9.13□□□□□ -0.95
TDP1-204ENST00000545686 KRT37O76014 449 aa9.13□□□□□ -0.95
TDP1-204ENST00000545686 TM7SF2O76062 418 aa9.13□□□□□ -0.95
TDP1-204ENST00000545686 SUPT20HL2P0C7V6 817 aa9.13□□□□□ -0.95
TDP1-204ENST00000545686 KRT3P12035 628 aa9.13□□□□□ -0.95
TDP1-204ENST00000545686 RFC1P35251 1148 aaPredicted RBP9.13□□□□□ -0.95
TDP1-204ENST00000545686 BASP1P80723 227 aaKnown RBP9.13□□□□□ -0.95
TDP1-204ENST00000545686 FAAP100Q0VG06 881 aa9.13□□□□□ -0.95
TDP1-204ENST00000545686 THOC5Q13769 683 aaKnown RBP9.13□□□□□ -0.95
TDP1-204ENST00000545686 GNPTABQ3T906 1256 aa9.13□□□□□ -0.95
TDP1-204ENST00000545686 KBTBD12Q3ZCT8 623 aa9.13□□□□□ -0.95
TDP1-204ENST00000545686 SUPT20HL1Q3ZLR7 823 aa9.13□□□□□ -0.95
TDP1-204ENST00000545686 ZBTB41Q5SVQ8 909 aa9.13□□□□□ -0.95
TDP1-204ENST00000545686 LGSNQ5TDP6 509 aa9.13□□□□□ -0.95
TDP1-204ENST00000545686 ZPBP2Q6X784 338 aa9.13□□□□□ -0.95
TDP1-204ENST00000545686 KYAT3Q6YP21 454 aaKnown RBP9.13□□□□□ -0.95
TDP1-204ENST00000545686 UNC45BQ8IWX7 931 aa9.13□□□□□ -0.95
TDP1-204ENST00000545686 AKT1S1Q96B36 256 aa9.13□□□□□ -0.95
TDP1-204ENST00000545686 PRR11Q96HE9 360 aaPredicted RBP9.13□□□□□ -0.95
TDP1-204ENST00000545686 SRPK1Q96SB4 655 aaKnown RBP9.13□□□□□ -0.95
TDP1-204ENST00000545686 SIKE1Q9BRV8 207 aa9.13□□□□□ -0.95
TDP1-204ENST00000545686 MAF1Q9H063 256 aa9.13□□□□□ -0.95
TDP1-204ENST00000545686 C1orf21Q9H246 121 aa9.13□□□□□ -0.95
TDP1-204ENST00000545686 C12orf65Q9H3J6 166 aaKnown RBP9.13□□□□□ -0.95
TDP1-204ENST00000545686 RSAD1Q9HA92 442 aa9.13□□□□□ -0.95
TDP1-204ENST00000545686 KRT82Q9NSB4 513 aa9.13□□□□□ -0.95
TDP1-204ENST00000545686 SIRPGQ9P1W8 387 aa9.13□□□□□ -0.95
TDP1-204ENST00000545686 SORCS3Q9UPU3 1222 aa9.13□□□□□ -0.95
TDP1-204ENST00000545686 LRRIQ4A6NIV6 560 aa9.12□□□□□ -0.95
TDP1-204ENST00000545686 TRDMT1O14717 391 aaKnown RBP9.12□□□□□ -0.95
TDP1-204ENST00000545686 MED7O43513 233 aa9.12□□□□□ -0.95
TDP1-204ENST00000545686 ATG7O95352 703 aa9.12□□□□□ -0.95
TDP1-204ENST00000545686 SNRPAP09012 282 aaKnown RBP9.12□□□□□ -0.95
TDP1-204ENST00000545686 RBP3P10745 1247 aa9.12□□□□□ -0.95
TDP1-204ENST00000545686 IL1R2P27930 398 aa9.12□□□□□ -0.95
TDP1-204ENST00000545686 CACNA2D1P54289 1103 aa9.12□□□□□ -0.95
TDP1-204ENST00000545686 ROR1Q01973 937 aa9.12□□□□□ -0.95
TDP1-204ENST00000545686 CYP4A22Q5TCH4 519 aa9.12□□□□□ -0.95
TDP1-204ENST00000545686 MTHFD1LQ6UB35 978 aa9.12□□□□□ -0.95
TDP1-204ENST00000545686 ADGRG6Q86SQ4 1221 aa9.12□□□□□ -0.95
TDP1-204ENST00000545686 TTC7BQ86TV6 843 aa9.12□□□□□ -0.95
TDP1-204ENST00000545686 MYLK4Q86YV6 388 aaPredicted RBP9.12□□□□□ -0.95
TDP1-204ENST00000545686 RFX6Q8HWS3 928 aa9.12□□□□□ -0.95
TDP1-204ENST00000545686 CDAN1Q8IWY9 1227 aa9.12□□□□□ -0.95
TDP1-204ENST00000545686 ARHGAP18Q8N392 663 aa9.12□□□□□ -0.95
TDP1-204ENST00000545686 FAM71DQ8N9W8 422 aa9.12□□□□□ -0.95
TDP1-204ENST00000545686 NSUN6Q8TEA1 469 aaKnown RBP9.12□□□□□ -0.95
TDP1-204ENST00000545686 MTBPQ96DY7 904 aa9.12□□□□□ -0.95
TDP1-204ENST00000545686 ZBTB45Q96K62 511 aaPredicted RBP9.12□□□□□ -0.95
TDP1-204ENST00000545686 TARS2Q9BW92 718 aaKnown RBP9.12□□□□□ -0.95
TDP1-204ENST00000545686 ZWILCHQ9H900 591 aa9.12□□□□□ -0.95
TDP1-204ENST00000545686 ALG13Q9NP73 1137 aaKnown RBP9.12□□□□□ -0.95
TDP1-204ENST00000545686 RNF146Q9NTX7 359 aa9.12□□□□□ -0.95
TDP1-204ENST00000545686 SAE1Q9UBE0 346 aaPredicted RBP9.12□□□□□ -0.95
TDP1-204ENST00000545686 FBXO40Q9UH90 709 aa9.12□□□□□ -0.95
TDP1-204ENST00000545686 TAGLN3Q9UI15 199 aa9.12□□□□□ -0.95
TDP1-204ENST00000545686 PLA2G4CQ9UP65 541 aa9.12□□□□□ -0.95
TDP1-204ENST00000545686 PLLPQ9Y342 182 aa9.12□□□□□ -0.95
TDP1-204ENST00000545686 TTLL3Q9Y4R7 772 aa9.12□□□□□ -0.95
TDP1-204ENST00000545686 B2RBV5 119 aa9.12□□□□□ -0.95
TDP1-204ENST00000545686 SPECC1L-ADORA2AF8WAN1 911 aa9.12□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms