RNA–Protein interactions for RNA: ENST00000544622.4

YBX3-216, Transcript of Y-box binding protein 3, humanhuman

TSL 3

Gene YBX3, Length 685 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-216ENST00000544622 LTB4R2Q9NPC1 389 aa12.11□□□□□ -0.47
YBX3-216ENST00000544622 TRPM5Q9NZQ8 1165 aa12.11□□□□□ -0.47
YBX3-216ENST00000544622 ARHGAP26Q9UNA1 814 aa12.11□□□□□ -0.47
YBX3-216ENST00000544622 ANAPC1Q9H1A4 1944 aa12.1□□□□□ -0.47
YBX3-216ENST00000544622 OTOL1A6NHN0 477 aaPredicted RBP12.1□□□□□ -0.47
YBX3-216ENST00000544622 DPYSL4O14531 572 aa12.1□□□□□ -0.47
YBX3-216ENST00000544622 CLSTN1O94985 981 aa12.1□□□□□ -0.47
YBX3-216ENST00000544622 RTN3O95197 1032 aaPredicted RBP12.1□□□□□ -0.47
YBX3-216ENST00000544622 DCNP07585 359 aaKnown RBP12.1□□□□□ -0.47
YBX3-216ENST00000544622 USP17L7P0C7H9 530 aa12.1□□□□□ -0.47
YBX3-216ENST00000544622 HDCP19113 662 aa12.1□□□□□ -0.47
YBX3-216ENST00000544622 ACO1P21399 889 aaKnown RBP12.1□□□□□ -0.47
YBX3-216ENST00000544622 PLA2G5P39877 138 aa12.1□□□□□ -0.47
YBX3-216ENST00000544622 MAP3K7CLP57077 242 aa12.1□□□□□ -0.47
YBX3-216ENST00000544622 SLC7A9P82251 487 aa12.1□□□□□ -0.47
YBX3-216ENST00000544622 PLCB2Q00722 1185 aa12.1□□□□□ -0.47
YBX3-216ENST00000544622 NHLH1Q02575 133 aa12.1□□□□□ -0.47
YBX3-216ENST00000544622 ZNF77Q15935 545 aa12.1□□□□□ -0.47
YBX3-216ENST00000544622 DPCR1Q3MIW9 517 aa12.1□□□□□ -0.47
YBX3-216ENST00000544622 CCDC40Q4G0X9 1142 aa12.1□□□□□ -0.47
YBX3-216ENST00000544622 ZNF394Q53GI3 561 aa12.1□□□□□ -0.47
YBX3-216ENST00000544622 ARHGAP17Q68EM7 881 aa12.1□□□□□ -0.47
YBX3-216ENST00000544622 KIAA1958Q8N8K9 716 aa12.1□□□□□ -0.47
YBX3-216ENST00000544622 ARL14EPQ8N8R7 260 aaPredicted RBP12.1□□□□□ -0.47
YBX3-216ENST00000544622 EHBP1Q8NDI1 1231 aa12.1□□□□□ -0.47
YBX3-216ENST00000544622 CHFRQ96EP1 664 aa12.1□□□□□ -0.47
YBX3-216ENST00000544622 ZFYVE19Q96K21 471 aa12.1□□□□□ -0.47
YBX3-216ENST00000544622 MED10Q9BTT4 135 aa12.1□□□□□ -0.47
YBX3-216ENST00000544622 UBXN6Q9BZV1 441 aa12.1□□□□□ -0.47
YBX3-216ENST00000544622 NUP62CLQ9H1M0 184 aa12.1□□□□□ -0.47
YBX3-216ENST00000544622 KRT82Q9NSB4 513 aa12.1□□□□□ -0.47
YBX3-216ENST00000544622 FAM49BQ9NUQ9 324 aa12.1□□□□□ -0.47
YBX3-216ENST00000544622 GTSE1Q9NYZ3 720 aa12.1□□□□□ -0.47
YBX3-216ENST00000544622 ATP8B3O60423 1300 aa12.1□□□□□ -0.47
YBX3-216ENST00000544622 KIF26AQ9ULI4 1882 aaPredicted RBP12.09□□□□□ -0.47
YBX3-216ENST00000544622 TRAV19A0A0A6YYK7 116 aa12.09□□□□□ -0.47
YBX3-216ENST00000544622 FAM170BA6NMN3 283 aa12.09□□□□□ -0.47
YBX3-216ENST00000544622 MAN2B1O00754 1011 aa12.09□□□□□ -0.47
YBX3-216ENST00000544622 FGFR1OPO95684 399 aaKnown RBP12.09□□□□□ -0.47
YBX3-216ENST00000544622 FAM200BP0CF97 657 aa12.09□□□□□ -0.47
YBX3-216ENST00000544622 TBXAS1P24557 533 aaPredicted RBP12.09□□□□□ -0.47
YBX3-216ENST00000544622 TARSP26639 723 aaKnown RBP12.09□□□□□ -0.47
YBX3-216ENST00000544622 ERCC5P28715 1186 aaPredicted RBP12.09□□□□□ -0.47
YBX3-216ENST00000544622 RPS9P46781 194 aaKnown RBP12.09□□□□□ -0.47
YBX3-216ENST00000544622 PGFP49763 221 aa12.09□□□□□ -0.47
YBX3-216ENST00000544622 TUBP50607 506 aa12.09□□□□□ -0.47
YBX3-216ENST00000544622 PTPN5P54829 565 aa12.09□□□□□ -0.47
YBX3-216ENST00000544622 TNK2Q07912 1038 aa12.09□□□□□ -0.47
YBX3-216ENST00000544622 USP4Q13107 963 aa12.09□□□□□ -0.47
YBX3-216ENST00000544622 CT47A1Q5JQC4 288 aaPredicted RBP12.09□□□□□ -0.47
YBX3-216ENST00000544622 MAMSTRQ6ZN01 415 aa12.09□□□□□ -0.47
YBX3-216ENST00000544622 GPRIN1Q7Z2K8 1008 aa12.09□□□□□ -0.47
YBX3-216ENST00000544622 YAF2Q8IY57 180 aa12.09□□□□□ -0.47
YBX3-216ENST00000544622 DTWD2Q8NBA8 298 aa12.09□□□□□ -0.47
YBX3-216ENST00000544622 PDZD8Q8NEN9 1154 aa12.09□□□□□ -0.47
YBX3-216ENST00000544622 MSANTD3Q96H12 275 aa12.09□□□□□ -0.47
YBX3-216ENST00000544622 HEXIM2Q96MH2 286 aaKnown RBP12.09□□□□□ -0.47
YBX3-216ENST00000544622 GBP4Q96PP9 640 aa12.09□□□□□ -0.47
YBX3-216ENST00000544622 SLITRK1Q96PX8 696 aa12.09□□□□□ -0.47
YBX3-216ENST00000544622 DUSP16Q9BY84 665 aa12.09□□□□□ -0.47
YBX3-216ENST00000544622 C8orf33Q9H7E9 229 aaPredicted RBP12.09□□□□□ -0.47
YBX3-216ENST00000544622 HPS4Q9NQG7 708 aa12.09□□□□□ -0.47
YBX3-216ENST00000544622 GKN1Q9NS71 199 aa12.09□□□□□ -0.47
YBX3-216ENST00000544622 CHORDC1Q9UHD1 332 aaPredicted RBP12.09□□□□□ -0.47
YBX3-216ENST00000544622 UTP18Q9Y5J1 556 aaKnown RBP eCLIP12.09□□□□□ -0.47
YBX3-216ENST00000544622 USP3Q9Y6I4 520 aa12.09□□□□□ -0.47
YBX3-216ENST00000544622 PIAS3Q9Y6X2 628 aa12.09□□□□□ -0.47
YBX3-216ENST00000544622 ZNF638Q14966 1978 aaKnown RBP12.09□□□□□ -0.47
YBX3-216ENST00000544622 STK25O00506 426 aa12.08□□□□□ -0.48
YBX3-216ENST00000544622 AFPP02771 609 aaKnown RBP12.08□□□□□ -0.48
YBX3-216ENST00000544622 CCDC192P0DO97 292 aa12.08□□□□□ -0.48
YBX3-216ENST00000544622 ADORA2BP29275 332 aa12.08□□□□□ -0.48
YBX3-216ENST00000544622 PDE6CP51160 858 aa12.08□□□□□ -0.48
YBX3-216ENST00000544622 KIF11P52732 1056 aa12.08□□□□□ -0.48
YBX3-216ENST00000544622 GCNT1Q02742 428 aa12.08□□□□□ -0.48
YBX3-216ENST00000544622 CETN1Q12798 172 aa12.08□□□□□ -0.48
YBX3-216ENST00000544622 MTF1Q14872 753 aa12.08□□□□□ -0.48
YBX3-216ENST00000544622 RAB41Q5JT25 222 aa12.08□□□□□ -0.48
YBX3-216ENST00000544622 C1orf228Q6PIY5 440 aa12.08□□□□□ -0.48
YBX3-216ENST00000544622 TXNDC11Q6PKC3 985 aa12.08□□□□□ -0.48
YBX3-216ENST00000544622 RALGPS2Q86X27 583 aaPredicted RBP12.08□□□□□ -0.48
YBX3-216ENST00000544622 MAML2Q8IZL2 1156 aaPredicted RBP12.08□□□□□ -0.48
YBX3-216ENST00000544622 ANKRD52Q8NB46 1076 aa12.08□□□□□ -0.48
YBX3-216ENST00000544622 CSGALNACT1Q8TDX6 532 aa12.08□□□□□ -0.48
YBX3-216ENST00000544622 OSCP1Q8WVF1 389 aa12.08□□□□□ -0.48
YBX3-216ENST00000544622 FAM3CQ92520 227 aa12.08□□□□□ -0.48
YBX3-216ENST00000544622 ZFRQ96KR1 1074 aaKnown RBP12.08□□□□□ -0.48
YBX3-216ENST00000544622 FBXO44Q9H4M3 255 aa12.08□□□□□ -0.48
YBX3-216ENST00000544622 TRPC7Q9HCX4 862 aa12.08□□□□□ -0.48
YBX3-216ENST00000544622 THG1LQ9NWX6 298 aaKnown RBP12.08□□□□□ -0.48
YBX3-216ENST00000544622 KIAA1257Q9ULG3 409 aa12.08□□□□□ -0.48
YBX3-216ENST00000544622 CNTN6Q9UQ52 1028 aa12.08□□□□□ -0.48
YBX3-216ENST00000544622 SCML2Q9UQR0 700 aa12.08□□□□□ -0.48
YBX3-216ENST00000544622 MRPS17Q9Y2R5 130 aaKnown RBP12.08□□□□□ -0.48
YBX3-216ENST00000544622 TICRRQ7Z2Z1 1910 aa12.07□□□□□ -0.48
YBX3-216ENST00000544622 SPECC1L-ADORA2AF8WAN1 911 aa12.07□□□□□ -0.48
YBX3-216ENST00000544622 H0Y858 1186 aa12.07□□□□□ -0.48
YBX3-216ENST00000544622 RNF225M0QZC1 329 aaPredicted RBP12.07□□□□□ -0.48
YBX3-216ENST00000544622 CKMP06732 381 aa12.07□□□□□ -0.48
YBX3-216ENST00000544622 CHRNB1P11230 501 aa12.07□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 36.4 ms