RNA–Protein interactions for RNA: ENST00000543016.1

DDX55-210, Transcript of DEAD-box helicase 55, humanhuman

TSL 3

Gene DDX55, Length 329 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55-210ENST00000543016 FBXO21O94952 628 aa12.85□□□□□ -0.35
DDX55-210ENST00000543016 SERPING1P05155 500 aa12.85□□□□□ -0.35
DDX55-210ENST00000543016 PNMA6AP0CW24 399 aaPredicted RBP12.85□□□□□ -0.35
DDX55-210ENST00000543016 HMGA1P17096 107 aaKnown RBP12.85□□□□□ -0.35
DDX55-210ENST00000543016 PFKLP17858 780 aa12.85□□□□□ -0.35
DDX55-210ENST00000543016 DDX6P26196 483 aaKnown RBP eCLIP12.85□□□□□ -0.35
DDX55-210ENST00000543016 YWHAQP27348 245 aa12.85□□□□□ -0.35
DDX55-210ENST00000543016 KIF11P52732 1056 aa12.85□□□□□ -0.35
DDX55-210ENST00000543016 CACNA2D1P54289 1103 aa12.85□□□□□ -0.35
DDX55-210ENST00000543016 CDK17Q00537 523 aa12.85□□□□□ -0.35
DDX55-210ENST00000543016 ARID5AQ03989 594 aa12.85□□□□□ -0.35
DDX55-210ENST00000543016 KLHL30Q0D2K2 578 aa12.85□□□□□ -0.35
DDX55-210ENST00000543016 RAB41Q5JT25 222 aa12.85□□□□□ -0.35
DDX55-210ENST00000543016 PDZD4Q76G19 769 aaPredicted RBP12.85□□□□□ -0.35
DDX55-210ENST00000543016 NOP9Q86U38 636 aaKnown RBP12.85□□□□□ -0.35
DDX55-210ENST00000543016 ARHGAP18Q8N392 663 aa12.85□□□□□ -0.35
DDX55-210ENST00000543016 UBA3Q8TBC4 463 aa12.85□□□□□ -0.35
DDX55-210ENST00000543016 GIPC2Q8TF65 315 aa12.85□□□□□ -0.35
DDX55-210ENST00000543016 ANP32BQ92688 251 aaKnown RBP12.85□□□□□ -0.35
DDX55-210ENST00000543016 SECISBP2LQ93073 1101 aaKnown RBP12.85□□□□□ -0.35
DDX55-210ENST00000543016 SLITRK1Q96PX8 696 aa12.85□□□□□ -0.35
DDX55-210ENST00000543016 GCNAQ96QF7 691 aa12.85□□□□□ -0.35
DDX55-210ENST00000543016 AGPAT1Q99943 283 aa12.85□□□□□ -0.35
DDX55-210ENST00000543016 SLC4A5Q9BY07 1137 aa12.85□□□□□ -0.35
DDX55-210ENST00000543016 ACP6Q9NPH0 428 aa12.85□□□□□ -0.35
DDX55-210ENST00000543016 CNGB3Q9NQW8 809 aa12.85□□□□□ -0.35
DDX55-210ENST00000543016 THEGQ9P2T0 379 aa12.85□□□□□ -0.35
DDX55-210ENST00000543016 DNMT3BQ9UBC3 853 aaKnown RBP12.85□□□□□ -0.35
DDX55-210ENST00000543016 PTPRDP23468 1912 aa12.84□□□□□ -0.35
DDX55-210ENST00000543016 HHLA1C9JL84 531 aa12.84□□□□□ -0.35
DDX55-210ENST00000543016 H3BQ06 376 aaPredicted RBP12.84□□□□□ -0.35
DDX55-210ENST00000543016 MFAP3LO75121 409 aa12.84□□□□□ -0.35
DDX55-210ENST00000543016 BEST1O76090 585 aa12.84□□□□□ -0.35
DDX55-210ENST00000543016 RHOP08100 348 aa12.84□□□□□ -0.35
DDX55-210ENST00000543016 TNFAIP3P21580 790 aa12.84□□□□□ -0.35
DDX55-210ENST00000543016 GPR15P49685 360 aa12.84□□□□□ -0.35
DDX55-210ENST00000543016 PSEN1P49768 467 aa12.84□□□□□ -0.35
DDX55-210ENST00000543016 SLC5A3P53794 718 aa12.84□□□□□ -0.35
DDX55-210ENST00000543016 GSE1Q14687 1217 aa12.84□□□□□ -0.35
DDX55-210ENST00000543016 CBX2Q14781 532 aaPredicted RBP12.84□□□□□ -0.35
DDX55-210ENST00000543016 DENND1BQ6P3S1 775 aa12.84□□□□□ -0.35
DDX55-210ENST00000543016 CCDC186Q7Z3E2 898 aa12.84□□□□□ -0.35
DDX55-210ENST00000543016 GRASPQ7Z6J2 395 aaPredicted RBP12.84□□□□□ -0.35
DDX55-210ENST00000543016 TMEM110Q86TL2 294 aa12.84□□□□□ -0.35
DDX55-210ENST00000543016 ATXN2LQ8WWM7 1075 aaKnown RBP12.84□□□□□ -0.35
DDX55-210ENST00000543016 IRGQQ8WZA9 623 aa12.84□□□□□ -0.35
DDX55-210ENST00000543016 CORO1BQ9BR76 489 aa12.84□□□□□ -0.35
DDX55-210ENST00000543016 TRIM62Q9BVG3 475 aa12.84□□□□□ -0.35
DDX55-210ENST00000543016 LRRC3Q9BY71 257 aa12.84□□□□□ -0.35
DDX55-210ENST00000543016 TMEM30AQ9NV96 361 aa12.84□□□□□ -0.35
DDX55-210ENST00000543016 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP12.84□□□□□ -0.35
DDX55-210ENST00000543016 SCML2Q9UQR0 700 aa12.84□□□□□ -0.35
DDX55-210ENST00000543016 USTQ9Y2C2 406 aa12.84□□□□□ -0.35
DDX55-210ENST00000543016 USP15Q9Y4E8 981 aaPredicted RBP12.84□□□□□ -0.35
DDX55-210ENST00000543016 USP3Q9Y6I4 520 aa12.84□□□□□ -0.35
DDX55-210ENST00000543016 CDH23Q9H251 3354 aa12.84□□□□□ -0.35
DDX55-210ENST00000543016 MBTPS2O43462 519 aa12.83□□□□□ -0.36
DDX55-210ENST00000543016 CYP1A1P04798 512 aaPredicted RBP12.83□□□□□ -0.36
DDX55-210ENST00000543016 GZMAP12544 262 aa12.83□□□□□ -0.36
DDX55-210ENST00000543016 FSHRP23945 695 aa12.83□□□□□ -0.36
DDX55-210ENST00000543016 FMO1Q01740 532 aa12.83□□□□□ -0.36
DDX55-210ENST00000543016 PDCLQ13371 301 aa12.83□□□□□ -0.36
DDX55-210ENST00000543016 SMAD2Q15796 467 aaKnown RBP12.83□□□□□ -0.36
DDX55-210ENST00000543016 ARHGAP15Q53QZ3 475 aa12.83□□□□□ -0.36
DDX55-210ENST00000543016 SDHAF4Q5VUM1 108 aa12.83□□□□□ -0.36
DDX55-210ENST00000543016 SNX30Q5VWJ9 437 aa12.83□□□□□ -0.36
DDX55-210ENST00000543016 PM20D1Q6GTS8 502 aa12.83□□□□□ -0.36
DDX55-210ENST00000543016 PMF1Q6P1K2 205 aa12.83□□□□□ -0.36
DDX55-210ENST00000543016 MON1AQ86VX9 555 aa12.83□□□□□ -0.36
DDX55-210ENST00000543016 TMC8Q8IU68 726 aa12.83□□□□□ -0.36
DDX55-210ENST00000543016 ZDHHC17Q8IUH5 632 aa12.83□□□□□ -0.36
DDX55-210ENST00000543016 SIX6OS1Q8N1H7 587 aa12.83□□□□□ -0.36
DDX55-210ENST00000543016 ZNF276Q8N554 614 aa12.83□□□□□ -0.36
DDX55-210ENST00000543016 STKLD1Q8NE28 680 aa12.83□□□□□ -0.36
DDX55-210ENST00000543016 IPO4Q8TEX9 1081 aaKnown RBP12.83□□□□□ -0.36
DDX55-210ENST00000543016 PPP1R13BQ96KQ4 1090 aa12.83□□□□□ -0.36
DDX55-210ENST00000543016 CDK5RAP1Q96SZ6 601 aaKnown RBP12.83□□□□□ -0.36
DDX55-210ENST00000543016 SYT11Q9BT88 431 aa12.83□□□□□ -0.36
DDX55-210ENST00000543016 HAUS4Q9H6D7 363 aa12.83□□□□□ -0.36
DDX55-210ENST00000543016 ABHD10Q9NUJ1 306 aa12.83□□□□□ -0.36
DDX55-210ENST00000543016 GDE1Q9NZC3 331 aa12.83□□□□□ -0.36
DDX55-210ENST00000543016 TRPM5Q9NZQ8 1165 aa12.83□□□□□ -0.36
DDX55-210ENST00000543016 MRPS23Q9Y3D9 190 aaKnown RBP12.83□□□□□ -0.36
DDX55-210ENST00000543016 SZT2Q5T011 3432 aa12.82□□□□□ -0.36
DDX55-210ENST00000543016 SSU72P8A0A1W2PR75 194 aa12.82□□□□□ -0.36
DDX55-210ENST00000543016 GRXCR2A6NFK2 248 aa12.82□□□□□ -0.36
DDX55-210ENST00000543016 ZBED1O96006 694 aa12.82□□□□□ -0.36
DDX55-210ENST00000543016 CALCAP01258 141 aa12.82□□□□□ -0.36
DDX55-210ENST00000543016 F11P03951 625 aa12.82□□□□□ -0.36
DDX55-210ENST00000543016 MMEP08473 750 aa12.82□□□□□ -0.36
DDX55-210ENST00000543016 MYL4P12829 197 aa12.82□□□□□ -0.36
DDX55-210ENST00000543016 CHRNB2P17787 502 aa12.82□□□□□ -0.36
DDX55-210ENST00000543016 GABRR2P28476 465 aa12.82□□□□□ -0.36
DDX55-210ENST00000543016 WEE1P30291 646 aa12.82□□□□□ -0.36
DDX55-210ENST00000543016 TUBP50607 506 aa12.82□□□□□ -0.36
DDX55-210ENST00000543016 TKTL1P51854 596 aa12.82□□□□□ -0.36
DDX55-210ENST00000543016 CDR1P51861 262 aa12.82□□□□□ -0.36
DDX55-210ENST00000543016 GSDMDP57764 484 aa12.82□□□□□ -0.36
DDX55-210ENST00000543016 MRPS5P82675 430 aaKnown RBP12.82□□□□□ -0.36
DDX55-210ENST00000543016 TAF10Q12962 218 aa12.82□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms