RNA–Protein interactions for RNA: ENST00000542845.3

LIMS1-214, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 5

Gene LIMS1, Length 727 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-214ENST00000542845 CPA1P15085 419 aa5.16□□□□□ -1.58
LIMS1-214ENST00000542845 GABRG2P18507 467 aa5.16□□□□□ -1.58
LIMS1-214ENST00000542845 ADSSP30520 456 aa5.16□□□□□ -1.58
LIMS1-214ENST00000542845 HNF1BP35680 557 aa5.16□□□□□ -1.58
LIMS1-214ENST00000542845 TNFSF9P41273 254 aa5.16□□□□□ -1.58
LIMS1-214ENST00000542845 GRM5P41594 1212 aa5.16□□□□□ -1.58
LIMS1-214ENST00000542845 MATKP42679 507 aa5.16□□□□□ -1.58
LIMS1-214ENST00000542845 MATR3P43243 847 aaKnown RBP eCLIP5.16□□□□□ -1.58
LIMS1-214ENST00000542845 GPR15P49685 360 aa5.16□□□□□ -1.58
LIMS1-214ENST00000542845 RARRES1P49788 294 aa5.16□□□□□ -1.58
LIMS1-214ENST00000542845 GUCY2FP51841 1108 aa5.16□□□□□ -1.58
LIMS1-214ENST00000542845 NLRP12P59046 1061 aa5.16□□□□□ -1.58
LIMS1-214ENST00000542845 EXOSC10Q01780 885 aaKnown RBP5.16□□□□□ -1.58
LIMS1-214ENST00000542845 MESP2Q0VG99 397 aa5.16□□□□□ -1.58
LIMS1-214ENST00000542845 AAMPQ13685 434 aa5.16□□□□□ -1.58
LIMS1-214ENST00000542845 NAA30Q147X3 362 aaPredicted RBP5.16□□□□□ -1.58
LIMS1-214ENST00000542845 SUZ12Q15022 739 aaKnown RBP5.16□□□□□ -1.58
LIMS1-214ENST00000542845 OCLNQ16625 522 aa5.16□□□□□ -1.58
LIMS1-214ENST00000542845 HLA-BQ31612 363 aa5.16□□□□□ -1.58
LIMS1-214ENST00000542845 ZNF568Q3ZCX4 644 aa5.16□□□□□ -1.58
LIMS1-214ENST00000542845 ZC2HC1CQ53FD0 456 aaPredicted RBP5.16□□□□□ -1.58
LIMS1-214ENST00000542845 WDR45BQ5MNZ6 344 aa5.16□□□□□ -1.58
LIMS1-214ENST00000542845 TTC22Q5TAA0 569 aa5.16□□□□□ -1.58
LIMS1-214ENST00000542845 CDCA2Q69YH5 1023 aaPredicted RBP5.16□□□□□ -1.58
LIMS1-214ENST00000542845 ALKAL1Q6UXT8 129 aa5.16□□□□□ -1.58
LIMS1-214ENST00000542845 DHX32Q7L7V1 743 aaKnown RBP5.16□□□□□ -1.58
LIMS1-214ENST00000542845 VASH1Q7L8A9 365 aaPredicted RBP5.16□□□□□ -1.58
LIMS1-214ENST00000542845 TMEM150AQ86TG1 271 aa5.16□□□□□ -1.58
LIMS1-214ENST00000542845 MON1AQ86VX9 555 aa5.16□□□□□ -1.58
LIMS1-214ENST00000542845 SMC5Q8IY18 1101 aa5.16□□□□□ -1.58
LIMS1-214ENST00000542845 ZCCHC9Q8N567 271 aaKnown RBP5.16□□□□□ -1.58
LIMS1-214ENST00000542845 NAT16Q8N8M0 369 aa5.16□□□□□ -1.58
LIMS1-214ENST00000542845 ARL14EPQ8N8R7 260 aaPredicted RBP5.16□□□□□ -1.58
LIMS1-214ENST00000542845 SERBP1Q8NC51 408 aaKnown RBP eCLIP5.16□□□□□ -1.58
LIMS1-214ENST00000542845 SH3RF2Q8TEC5 729 aa5.16□□□□□ -1.58
LIMS1-214ENST00000542845 HAS1Q92839 578 aa5.16□□□□□ -1.58
LIMS1-214ENST00000542845 IFT74Q96LB3 600 aa5.16□□□□□ -1.58
LIMS1-214ENST00000542845 YTHDC1Q96MU7 727 aaKnown RBP5.16□□□□□ -1.58
LIMS1-214ENST00000542845 SLC22A12Q96S37 553 aa5.16□□□□□ -1.58
LIMS1-214ENST00000542845 KCTD15Q96SI1 283 aaPredicted RBP5.16□□□□□ -1.58
LIMS1-214ENST00000542845 PNKPQ96T60 521 aa5.16□□□□□ -1.58
LIMS1-214ENST00000542845 LGMNQ99538 433 aa5.16□□□□□ -1.58
LIMS1-214ENST00000542845 CCDC113Q9H0I3 377 aa5.16□□□□□ -1.58
LIMS1-214ENST00000542845 SLC6A17Q9H1V8 727 aa5.16□□□□□ -1.58
LIMS1-214ENST00000542845 CDT1Q9H211 546 aa5.16□□□□□ -1.58
LIMS1-214ENST00000542845 KCNMB3Q9NPA1 279 aa5.16□□□□□ -1.58
LIMS1-214ENST00000542845 CD93Q9NPY3 652 aa5.16□□□□□ -1.58
LIMS1-214ENST00000542845 ABI2Q9NYB9 513 aaPredicted RBP5.16□□□□□ -1.58
LIMS1-214ENST00000542845 CALCOCO1Q9P1Z2 691 aa5.16□□□□□ -1.58
LIMS1-214ENST00000542845 SUSD2Q9UGT4 822 aa5.16□□□□□ -1.58
LIMS1-214ENST00000542845 DCTN4Q9UJW0 460 aa5.16□□□□□ -1.58
LIMS1-214ENST00000542845 FNDC3AQ9Y2H6 1198 aaKnown RBP5.16□□□□□ -1.58
LIMS1-214ENST00000542845 PAXBP1Q9Y5B6 917 aa5.16□□□□□ -1.58
LIMS1-214ENST00000542845 TCHHQ07283 1943 aa5.15□□□□□ -1.58
LIMS1-214ENST00000542845 TRAV19A0A0A6YYK7 116 aa5.15□□□□□ -1.59
LIMS1-214ENST00000542845 A0A1B0GTW7 788 aa5.15□□□□□ -1.59
LIMS1-214ENST00000542845 TBC1D3BA6NDS4 549 aa5.15□□□□□ -1.59
LIMS1-214ENST00000542845 CCDC169A6NNP5 214 aa5.15□□□□□ -1.59
LIMS1-214ENST00000542845 M0QZQ0 153 aa5.15□□□□□ -1.59
LIMS1-214ENST00000542845 FLRT2O43155 660 aa5.15□□□□□ -1.59
LIMS1-214ENST00000542845 TNFSF14O43557 240 aa5.15□□□□□ -1.59
LIMS1-214ENST00000542845 ADAM23O75077 832 aa5.15□□□□□ -1.59
LIMS1-214ENST00000542845 PRPF40AO75400 957 aaKnown RBP5.15□□□□□ -1.59
LIMS1-214ENST00000542845 KAT7O95251 611 aa5.15□□□□□ -1.59
LIMS1-214ENST00000542845 MYF5P13349 255 aa5.15□□□□□ -1.59
LIMS1-214ENST00000542845 HOXB2P14652 356 aa5.15□□□□□ -1.59
LIMS1-214ENST00000542845 KCNE1P15382 129 aa5.15□□□□□ -1.59
LIMS1-214ENST00000542845 DDX6P26196 483 aaKnown RBP eCLIP5.15□□□□□ -1.59
LIMS1-214ENST00000542845 TXKP42681 527 aa5.15□□□□□ -1.59
LIMS1-214ENST00000542845 NAMPTP43490 491 aa5.15□□□□□ -1.59
LIMS1-214ENST00000542845 IL9RQ01113 521 aa5.15□□□□□ -1.59
LIMS1-214ENST00000542845 RHDQ02161 417 aa5.15□□□□□ -1.59
LIMS1-214ENST00000542845 TLE3Q04726 772 aa5.15□□□□□ -1.59
LIMS1-214ENST00000542845 FAM160A1Q05DH4 1040 aa5.15□□□□□ -1.59
LIMS1-214ENST00000542845 SSRP1Q08945 709 aaKnown RBP5.15□□□□□ -1.59
LIMS1-214ENST00000542845 SCRN1Q12765 414 aa5.15□□□□□ -1.59
LIMS1-214ENST00000542845 NFATC3Q12968 1075 aa5.15□□□□□ -1.59
LIMS1-214ENST00000542845 RESTQ13127 1097 aa5.15□□□□□ -1.59
LIMS1-214ENST00000542845 TARDBPQ13148 414 aaKnown RBP eCLIP5.15□□□□□ -1.59
LIMS1-214ENST00000542845 MYBPC2Q14324 1141 aa5.15□□□□□ -1.59
LIMS1-214ENST00000542845 NECTIN1Q15223 517 aa5.15□□□□□ -1.59
LIMS1-214ENST00000542845 SF3A1Q15459 793 aaKnown RBP5.15□□□□□ -1.59
LIMS1-214ENST00000542845 SMAD1Q15797 465 aaKnown RBP5.15□□□□□ -1.59
LIMS1-214ENST00000542845 ZNF77Q15935 545 aa5.15□□□□□ -1.59
LIMS1-214ENST00000542845 DDR2Q16832 855 aa5.15□□□□□ -1.59
LIMS1-214ENST00000542845 ADCK5Q3MIX3 580 aa5.15□□□□□ -1.59
LIMS1-214ENST00000542845 C4orf17Q53FE4 359 aa5.15□□□□□ -1.59
LIMS1-214ENST00000542845 C4orf48Q5BLP8 95 aa5.15□□□□□ -1.59
LIMS1-214ENST00000542845 BROXQ5VW32 411 aa5.15□□□□□ -1.59
LIMS1-214ENST00000542845 SDE2Q6IQ49 451 aa5.15□□□□□ -1.59
LIMS1-214ENST00000542845 MOXD1Q6UVY6 613 aa5.15□□□□□ -1.59
LIMS1-214ENST00000542845 KIAA1324Q6UXG2 1013 aaKnown RBP5.15□□□□□ -1.59
LIMS1-214ENST00000542845 Q6ZUG5 572 aa5.15□□□□□ -1.59
LIMS1-214ENST00000542845 USP49Q70CQ1 688 aa5.15□□□□□ -1.59
LIMS1-214ENST00000542845 FILIP1Q7Z7B0 1213 aa5.15□□□□□ -1.59
LIMS1-214ENST00000542845 NEK8Q86SG6 692 aa5.15□□□□□ -1.59
LIMS1-214ENST00000542845 TMPRSS12Q86WS5 348 aa5.15□□□□□ -1.59
LIMS1-214ENST00000542845 SPACA3Q8IXA5 215 aa5.15□□□□□ -1.59
LIMS1-214ENST00000542845 SLFN12Q8IYM2 578 aa5.15□□□□□ -1.59
LIMS1-214ENST00000542845 ZNF513Q8N8E2 541 aaPredicted RBP5.15□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms