RNA–Protein interactions for RNA: ENST00000541953.5

CLSTN3-213, Transcript of calsyntenin 3, humanhuman

TSL 5

Gene CLSTN3, Length 570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-213ENST00000541953 ZNF233A6NK53 670 aa16.49■□□□□ 0.23
CLSTN3-213ENST00000541953 SGK1O00141 431 aa16.49■□□□□ 0.23
CLSTN3-213ENST00000541953 CDX4O14627 284 aaPredicted RBP16.49■□□□□ 0.23
CLSTN3-213ENST00000541953 CLIC2O15247 247 aa16.49■□□□□ 0.23
CLSTN3-213ENST00000541953 DLATP10515 647 aaKnown RBP16.49■□□□□ 0.23
CLSTN3-213ENST00000541953 CASP4P49662 377 aa16.49■□□□□ 0.23
CLSTN3-213ENST00000541953 KDSRQ06136 332 aa16.49■□□□□ 0.23
CLSTN3-213ENST00000541953 DHCR24Q15392 516 aa16.49■□□□□ 0.23
CLSTN3-213ENST00000541953 CRY1Q16526 586 aa16.49■□□□□ 0.23
CLSTN3-213ENST00000541953 DUOXA2Q1HG44 320 aa16.49■□□□□ 0.23
CLSTN3-213ENST00000541953 RHBDF2Q6PJF5 856 aa16.49■□□□□ 0.23
CLSTN3-213ENST00000541953 TTC30AQ86WT1 665 aa16.49■□□□□ 0.23
CLSTN3-213ENST00000541953 ADGRG2Q8IZP9 1017 aa16.49■□□□□ 0.23
CLSTN3-213ENST00000541953 PHTF2Q8N3S3 785 aa16.49■□□□□ 0.23
CLSTN3-213ENST00000541953 IL17RCQ8NAC3 791 aa16.49■□□□□ 0.23
CLSTN3-213ENST00000541953 CNOT6LQ96LI5 555 aaKnown RBP16.49■□□□□ 0.23
CLSTN3-213ENST00000541953 B3GNT5Q9BYG0 378 aa16.49■□□□□ 0.23
CLSTN3-213ENST00000541953 TRIM9Q9C026 710 aa16.49■□□□□ 0.23
CLSTN3-213ENST00000541953 AGPAT3Q9NRZ7 376 aa16.49■□□□□ 0.23
CLSTN3-213ENST00000541953 CFAP97Q9P2B7 532 aa16.49■□□□□ 0.23
CLSTN3-213ENST00000541953 WASF3Q9UPY6 502 aa16.49■□□□□ 0.23
CLSTN3-213ENST00000541953 MORC2Q9Y6X9 1032 aaPredicted RBP16.49■□□□□ 0.23
CLSTN3-213ENST00000541953 FREM2Q5SZK8 3169 aa16.49■□□□□ 0.23
CLSTN3-213ENST00000541953 LAMA5O15230 3695 aa16.49■□□□□ 0.23
CLSTN3-213ENST00000541953 PLXND1Q9Y4D7 1925 aa16.49■□□□□ 0.23
CLSTN3-213ENST00000541953 ASCC3Q8N3C0 2202 aaKnown RBP16.48■□□□□ 0.23
CLSTN3-213ENST00000541953 DMXL2Q8TDJ6 3036 aa16.48■□□□□ 0.23
CLSTN3-213ENST00000541953 C1QTNF9BB2RNN3 333 aa16.48■□□□□ 0.23
CLSTN3-213ENST00000541953 ADAM23O75077 832 aa16.48■□□□□ 0.23
CLSTN3-213ENST00000541953 RHOBTB1O94844 696 aa16.48■□□□□ 0.23
CLSTN3-213ENST00000541953 ABL1P00519 1130 aa16.48■□□□□ 0.23
CLSTN3-213ENST00000541953 C1QTNF9P0C862 333 aa16.48■□□□□ 0.23
CLSTN3-213ENST00000541953 TIE1P35590 1138 aa16.48■□□□□ 0.23
CLSTN3-213ENST00000541953 NASPP49321 788 aaPredicted RBP16.48■□□□□ 0.23
CLSTN3-213ENST00000541953 PGFP49763 221 aa16.48■□□□□ 0.23
CLSTN3-213ENST00000541953 NOVA1P51513 510 aaKnown RBP16.48■□□□□ 0.23
CLSTN3-213ENST00000541953 CYP2J2P51589 502 aa16.48■□□□□ 0.23
CLSTN3-213ENST00000541953 NOP14P78316 857 aaKnown RBP16.48■□□□□ 0.23
CLSTN3-213ENST00000541953 CYP24A1Q07973 514 aa16.48■□□□□ 0.23
CLSTN3-213ENST00000541953 SNRNP35Q16560 246 aaKnown RBP16.48■□□□□ 0.23
CLSTN3-213ENST00000541953 ARMCX6Q7L4S7 300 aa16.48■□□□□ 0.23
CLSTN3-213ENST00000541953 HS2ST1Q7LGA3 356 aa16.48■□□□□ 0.23
CLSTN3-213ENST00000541953 NELFCDQ8IXH7 590 aa16.48■□□□□ 0.23
CLSTN3-213ENST00000541953 CCDC65Q8IXS2 484 aa16.48■□□□□ 0.23
CLSTN3-213ENST00000541953 TXNDC5Q8NBS9 432 aaKnown RBP16.48■□□□□ 0.23
CLSTN3-213ENST00000541953 OLIG1Q8TAK6 271 aa16.48■□□□□ 0.23
CLSTN3-213ENST00000541953 SCFD1Q8WVM8 642 aa16.48■□□□□ 0.23
CLSTN3-213ENST00000541953 CCDC127Q96BQ5 260 aa16.48■□□□□ 0.23
CLSTN3-213ENST00000541953 C8orf48Q96LL4 319 aa16.48■□□□□ 0.23
CLSTN3-213ENST00000541953 FNBP1Q96RU3 617 aa16.48■□□□□ 0.23
CLSTN3-213ENST00000541953 CGRRF1Q99675 332 aa16.48■□□□□ 0.23
CLSTN3-213ENST00000541953 XYLT2Q9H1B5 865 aa16.48■□□□□ 0.23
CLSTN3-213ENST00000541953 SMYD3Q9H7B4 428 aa16.48■□□□□ 0.23
CLSTN3-213ENST00000541953 KBTBD4Q9NVX7 518 aa16.48■□□□□ 0.23
CLSTN3-213ENST00000541953 MBD1Q9UIS9 605 aaPredicted RBP16.48■□□□□ 0.23
CLSTN3-213ENST00000541953 HCN2Q9UL51 889 aa16.48■□□□□ 0.23
CLSTN3-213ENST00000541953 ATXN2Q99700 1313 aaKnown RBP16.47■□□□□ 0.23
CLSTN3-213ENST00000541953 MYO18AQ92614 2054 aaKnown RBP16.47■□□□□ 0.23
CLSTN3-213ENST00000541953 ADAMTS9Q9P2N4 1935 aa16.47■□□□□ 0.23
CLSTN3-213ENST00000541953 TRIM66O15016 1216 aa16.47■□□□□ 0.23
CLSTN3-213ENST00000541953 TRIM24O15164 1050 aa16.47■□□□□ 0.23
CLSTN3-213ENST00000541953 TACC1O75410 805 aa16.47■□□□□ 0.23
CLSTN3-213ENST00000541953 KLF8O95600 359 aaPredicted RBP16.47■□□□□ 0.23
CLSTN3-213ENST00000541953 PTPN1P18031 435 aaKnown RBP16.47■□□□□ 0.23
CLSTN3-213ENST00000541953 PDCP20941 246 aa16.47■□□□□ 0.23
CLSTN3-213ENST00000541953 ANXA13P27216 316 aa16.47■□□□□ 0.23
CLSTN3-213ENST00000541953 GNL1P36915 607 aaPredicted RBP16.47■□□□□ 0.23
CLSTN3-213ENST00000541953 PTGER3P43115 390 aa16.47■□□□□ 0.23
CLSTN3-213ENST00000541953 KIR2DL1P43626 348 aaPredicted RBP16.47■□□□□ 0.23
CLSTN3-213ENST00000541953 CDH8P55286 799 aa16.47■□□□□ 0.23
CLSTN3-213ENST00000541953 MYL6P60660 151 aa16.47■□□□□ 0.23
CLSTN3-213ENST00000541953 IRX4P78413 519 aa16.47■□□□□ 0.23
CLSTN3-213ENST00000541953 EHHADHQ08426 723 aa16.47■□□□□ 0.23
CLSTN3-213ENST00000541953 NR1H3Q13133 447 aa16.47■□□□□ 0.23
CLSTN3-213ENST00000541953 PAQR9Q6ZVX9 377 aa16.47■□□□□ 0.23
CLSTN3-213ENST00000541953 LINC00301Q8NCQ3 95 aa16.47■□□□□ 0.23
CLSTN3-213ENST00000541953 OR6B3Q8NGW1 331 aa16.47■□□□□ 0.23
CLSTN3-213ENST00000541953 SCAMP5Q8TAC9 235 aa16.47■□□□□ 0.23
CLSTN3-213ENST00000541953 ZNF507Q8TCN5 953 aa16.47■□□□□ 0.23
CLSTN3-213ENST00000541953 DHX58Q96C10 678 aa16.47■□□□□ 0.23
CLSTN3-213ENST00000541953 KCNK16Q96T55 309 aa16.47■□□□□ 0.23
CLSTN3-213ENST00000541953 SDCBP2Q9H190 292 aa16.47■□□□□ 0.23
CLSTN3-213ENST00000541953 TNMDQ9H2S6 317 aa16.47■□□□□ 0.23
CLSTN3-213ENST00000541953 FSCN3Q9NQT6 498 aa16.47■□□□□ 0.23
CLSTN3-213ENST00000541953 TMEM74BQ9NUR3 256 aa16.47■□□□□ 0.23
CLSTN3-213ENST00000541953 KIAA0391O15091 583 aaKnown RBP16.46■□□□□ 0.23
CLSTN3-213ENST00000541953 COCHO43405 550 aa16.46■□□□□ 0.23
CLSTN3-213ENST00000541953 KAT7O95251 611 aa16.46■□□□□ 0.23
CLSTN3-213ENST00000541953 TNNI1P19237 187 aa16.46■□□□□ 0.23
CLSTN3-213ENST00000541953 DHPSP49366 369 aaPredicted RBP16.46■□□□□ 0.23
CLSTN3-213ENST00000541953 ASIC1P78348 528 aa16.46■□□□□ 0.23
CLSTN3-213ENST00000541953 ZNF252P-AS1Q0IIN9 211 aa16.46■□□□□ 0.23
CLSTN3-213ENST00000541953 PSMD6Q15008 389 aa16.46■□□□□ 0.23
CLSTN3-213ENST00000541953 WDR72Q3MJ13 1102 aa16.46■□□□□ 0.23
CLSTN3-213ENST00000541953 USP39Q53GS9 565 aaKnown RBP16.46■□□□□ 0.23
CLSTN3-213ENST00000541953 FAM26FQ5R3K3 315 aa16.46■□□□□ 0.23
CLSTN3-213ENST00000541953 LY6G5CQ5SRR4 150 aa16.46■□□□□ 0.23
CLSTN3-213ENST00000541953 SH3PXD2AQ5TCZ1 1133 aa16.46■□□□□ 0.23
CLSTN3-213ENST00000541953 SHC4Q6S5L8 630 aa16.46■□□□□ 0.23
CLSTN3-213ENST00000541953 CYP2U1Q7Z449 544 aa16.46■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms