RNA–Protein interactions for RNA: ENST00000540798.5

RTN3-210, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 3,124 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-210ENST00000540798 CYLDQ9NQC7 956 aa14.43□□□□□ -0.1
RTN3-210ENST00000540798 SAE1Q9UBE0 346 aaPredicted RBP14.43□□□□□ -0.1
RTN3-210ENST00000540798 SPTLC1O15269 473 aa14.42□□□□□ -0.1
RTN3-210ENST00000540798 AKAP5P24588 427 aa14.42□□□□□ -0.1
RTN3-210ENST00000540798 SCNN1AP37088 669 aa14.42□□□□□ -0.1
RTN3-210ENST00000540798 RGS2P41220 211 aa14.42□□□□□ -0.1
RTN3-210ENST00000540798 PSMC4P43686 418 aa14.42□□□□□ -0.1
RTN3-210ENST00000540798 PURAQ00577 322 aaKnown RBP14.42□□□□□ -0.1
RTN3-210ENST00000540798 DPYSL3Q14195 570 aa14.42□□□□□ -0.1
RTN3-210ENST00000540798 TAF1CQ15572 869 aaPredicted RBP14.42□□□□□ -0.1
RTN3-210ENST00000540798 FBXO47Q5MNV8 452 aa14.42□□□□□ -0.1
RTN3-210ENST00000540798 DPH6Q7L8W6 267 aa14.42□□□□□ -0.1
RTN3-210ENST00000540798 ARCQ7LC44 396 aa14.42□□□□□ -0.1
RTN3-210ENST00000540798 PCGF5Q86SE9 256 aa14.42□□□□□ -0.1
RTN3-210ENST00000540798 SESTD1Q86VW0 696 aa14.42□□□□□ -0.1
RTN3-210ENST00000540798 SMG8Q8ND04 991 aaKnown RBP14.42□□□□□ -0.1
RTN3-210ENST00000540798 TTC25Q96NG3 672 aa14.42□□□□□ -0.1
RTN3-210ENST00000540798 PIN4Q9Y237 131 aaKnown RBP14.42□□□□□ -0.1
RTN3-210ENST00000540798 C17orf102A2RUQ5 167 aa14.42□□□□□ -0.1
RTN3-210ENST00000540798 SGK1O00141 431 aa14.42□□□□□ -0.1
RTN3-210ENST00000540798 ALOX15BO15296 676 aa14.42□□□□□ -0.1
RTN3-210ENST00000540798 PAPSS1O43252 624 aaPredicted RBP14.42□□□□□ -0.1
RTN3-210ENST00000540798 MYL3P08590 195 aa14.42□□□□□ -0.1
RTN3-210ENST00000540798 FGFR1P11362 822 aa14.42□□□□□ -0.1
RTN3-210ENST00000540798 ATP5DP30049 168 aa14.42□□□□□ -0.1
RTN3-210ENST00000540798 PNPLA4P41247 253 aa14.42□□□□□ -0.1
RTN3-210ENST00000540798 C15orf59Q2T9L4 293 aaPredicted RBP14.42□□□□□ -0.1
RTN3-210ENST00000540798 HSPH1Q92598 858 aa14.42□□□□□ -0.1
RTN3-210ENST00000540798 TRIM6Q9C030 488 aaPredicted RBP14.42□□□□□ -0.1
RTN3-210ENST00000540798 FAM107BQ9H098 131 aa14.42□□□□□ -0.1
RTN3-210ENST00000540798 RNF39Q9H2S5 420 aa14.42□□□□□ -0.1
RTN3-210ENST00000540798 DPEP3Q9H4B8 488 aa14.42□□□□□ -0.1
RTN3-210ENST00000540798 SCN10AQ9Y5Y9 1956 aa14.42□□□□□ -0.1
RTN3-210ENST00000540798 DRD4P21917 467 aa14.41□□□□□ -0.1
RTN3-210ENST00000540798 RGS7P49802 495 aa14.41□□□□□ -0.1
RTN3-210ENST00000540798 DYNLT1P63172 113 aa14.41□□□□□ -0.1
RTN3-210ENST00000540798 CBLBQ13191 982 aa14.41□□□□□ -0.1
RTN3-210ENST00000540798 NOMO1Q15155 1222 aa14.41□□□□□ -0.1
RTN3-210ENST00000540798 C6orf89Q6UWU4 347 aa14.41□□□□□ -0.1
RTN3-210ENST00000540798 NAT8LQ8N9F0 302 aa14.41□□□□□ -0.1
RTN3-210ENST00000540798 SOCS4Q8WXH5 440 aa14.41□□□□□ -0.1
RTN3-210ENST00000540798 AP5M1Q9H0R1 490 aa14.41□□□□□ -0.1
RTN3-210ENST00000540798 FAM169AQ9Y6X4 670 aa14.41□□□□□ -0.1
RTN3-210ENST00000540798 KPNA7A9QM74 516 aa14.41□□□□□ -0.1
RTN3-210ENST00000540798 ZNF487B1APH4 448 aa14.41□□□□□ -0.1
RTN3-210ENST00000540798 PIK3R2O00459 728 aa14.41□□□□□ -0.1
RTN3-210ENST00000540798 IL4RP24394 825 aa14.41□□□□□ -0.1
RTN3-210ENST00000540798 BEX3Q00994 111 aa14.41□□□□□ -0.1
RTN3-210ENST00000540798 SOX4Q06945 474 aaPredicted RBP14.41□□□□□ -0.1
RTN3-210ENST00000540798 YTHDF3Q7Z739 585 aaKnown RBP14.41□□□□□ -0.1
RTN3-210ENST00000540798 TDRPQ86YL5 185 aa14.41□□□□□ -0.1
RTN3-210ENST00000540798 RFX6Q8HWS3 928 aa14.41□□□□□ -0.1
RTN3-210ENST00000540798 EGFL6Q8IUX8 553 aa14.41□□□□□ -0.1
RTN3-210ENST00000540798 RIBC1Q8N443 379 aaPredicted RBP14.41□□□□□ -0.1
RTN3-210ENST00000540798 C9orf72Q96LT7 481 aa14.41□□□□□ -0.1
RTN3-210ENST00000540798 ZNF560Q96MR9 790 aa14.41□□□□□ -0.1
RTN3-210ENST00000540798 STAU2Q9NUL3 570 aaKnown RBP eCLIP14.41□□□□□ -0.1
RTN3-210ENST00000540798 FAM49BQ9NUQ9 324 aa14.41□□□□□ -0.1
RTN3-210ENST00000540798 XPOTO43592 962 aaKnown RBP14.41□□□□□ -0.1
RTN3-210ENST00000540798 GCAP28676 217 aa14.41□□□□□ -0.1
RTN3-210ENST00000540798 SNX16P57768 344 aa14.41□□□□□ -0.1
RTN3-210ENST00000540798 PDK2Q15119 407 aa14.41□□□□□ -0.1
RTN3-210ENST00000540798 FAM47CQ5HY64 1035 aa14.41□□□□□ -0.1
RTN3-210ENST00000540798 VSTM1Q6UX27 236 aa14.41□□□□□ -0.1
RTN3-210ENST00000540798 IFNL1Q8IU54 200 aa14.41□□□□□ -0.1
RTN3-210ENST00000540798 ANKRD52Q8NB46 1076 aa14.41□□□□□ -0.1
RTN3-210ENST00000540798 ARRDC4Q8NCT1 418 aa14.41□□□□□ -0.1
RTN3-210ENST00000540798 CPT1BQ92523 772 aa14.41□□□□□ -0.1
RTN3-210ENST00000540798 CENPIQ92674 756 aaPredicted RBP14.41□□□□□ -0.1
RTN3-210ENST00000540798 CFAP57Q96MR6 1250 aa14.41□□□□□ -0.1
RTN3-210ENST00000540798 TBCBQ99426 244 aa14.41□□□□□ -0.1
RTN3-210ENST00000540798 SELENOSQ9BQE4 189 aa14.41□□□□□ -0.1
RTN3-210ENST00000540798 SAYSD1Q9NPB0 183 aa14.41□□□□□ -0.1
RTN3-210ENST00000540798 CTNNAL1Q9UBT7 734 aa14.41□□□□□ -0.1
RTN3-210ENST00000540798 IPPQ9Y573 584 aa14.41□□□□□ -0.1
RTN3-210ENST00000540798 A0A087WUV0 522 aaPredicted RBP14.4□□□□□ -0.1
RTN3-210ENST00000540798 CDH16O75309 829 aa14.4□□□□□ -0.1
RTN3-210ENST00000540798 ECM2O94769 699 aaPredicted RBP14.4□□□□□ -0.1
RTN3-210ENST00000540798 RPL22P35268 128 aaKnown RBP14.4□□□□□ -0.1
RTN3-210ENST00000540798 PTPN9P43378 593 aa14.4□□□□□ -0.1
RTN3-210ENST00000540798 PLCB3Q01970 1234 aa14.4□□□□□ -0.1
RTN3-210ENST00000540798 FSCN1Q16658 493 aaKnown RBP14.4□□□□□ -0.1
RTN3-210ENST00000540798 QPCTQ16769 361 aa14.4□□□□□ -0.1
RTN3-210ENST00000540798 BOLA3Q53S33 107 aa14.4□□□□□ -0.1
RTN3-210ENST00000540798 UNC45BQ8IWX7 931 aa14.4□□□□□ -0.1
RTN3-210ENST00000540798 PPIL6Q8IXY8 311 aa14.4□□□□□ -0.1
RTN3-210ENST00000540798 OR6B3Q8NGW1 331 aa14.4□□□□□ -0.1
RTN3-210ENST00000540798 ARHGEF2Q92974 986 aaKnown RBP14.4□□□□□ -0.1
RTN3-210ENST00000540798 FAF2Q96CS3 445 aa14.4□□□□□ -0.1
RTN3-210ENST00000540798 HESX1Q9UBX0 185 aa14.4□□□□□ -0.1
RTN3-210ENST00000540798 ACTL7BQ9Y614 415 aa14.4□□□□□ -0.1
RTN3-210ENST00000540798 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP14.4□□□□□ -0.1
RTN3-210ENST00000540798 A8MXQ7 604 aa14.4□□□□□ -0.1
RTN3-210ENST00000540798 ANKRD65E5RJM6 399 aa14.4□□□□□ -0.1
RTN3-210ENST00000540798 E7ESA3 106 aa14.4□□□□□ -0.1
RTN3-210ENST00000540798 SMAPO00193 183 aa14.4□□□□□ -0.1
RTN3-210ENST00000540798 MDM4O15151 490 aa14.4□□□□□ -0.1
RTN3-210ENST00000540798 HCRTO43612 131 aa14.4□□□□□ -0.1
RTN3-210ENST00000540798 CYP2B6P20813 491 aa14.4□□□□□ -0.1
RTN3-210ENST00000540798 LRPAP1P30533 357 aa14.4□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms