RNA–Protein interactions for RNA: ENST00000540469.5

SFSWAP-209, Transcript of splicing factor SWAP, humanhuman

TSL 3

Gene SFSWAP, Length 3,536 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-209ENST00000540469 IL1R1P14778 569 aa13.38□□□□□ -0.27
SFSWAP-209ENST00000540469 GDF10P55107 478 aa13.38□□□□□ -0.27
SFSWAP-209ENST00000540469 STX3Q13277 289 aa13.38□□□□□ -0.27
SFSWAP-209ENST00000540469 TTLL12Q14166 644 aaPredicted RBP13.38□□□□□ -0.27
SFSWAP-209ENST00000540469 DLGAP5Q15398 846 aa13.38□□□□□ -0.27
SFSWAP-209ENST00000540469 ABCB5Q2M3G0 1257 aa13.38□□□□□ -0.27
SFSWAP-209ENST00000540469 KCNT1Q5JUK3 1230 aa13.38□□□□□ -0.27
SFSWAP-209ENST00000540469 CDC42EP5Q6NZY7 148 aa13.38□□□□□ -0.27
SFSWAP-209ENST00000540469 RSPH3Q86UC2 560 aa13.38□□□□□ -0.27
SFSWAP-209ENST00000540469 ZNF677Q86XU0 584 aa13.38□□□□□ -0.27
SFSWAP-209ENST00000540469 RFX6Q8HWS3 928 aa13.38□□□□□ -0.27
SFSWAP-209ENST00000540469 EBF4Q9BQW3 602 aa13.38□□□□□ -0.27
SFSWAP-209ENST00000540469 STK32BQ9NY57 414 aa13.38□□□□□ -0.27
SFSWAP-209ENST00000540469 PRR12Q9ULL5 1215 aa13.38□□□□□ -0.27
SFSWAP-209ENST00000540469 ZHX2Q9Y6X8 837 aa13.38□□□□□ -0.27
SFSWAP-209ENST00000540469 TCRBV7S3A2A0A539 114 aa13.38□□□□□ -0.27
SFSWAP-209ENST00000540469 P4HBP07237 508 aaKnown RBP13.38□□□□□ -0.27
SFSWAP-209ENST00000540469 RPL22P35268 128 aaKnown RBP13.38□□□□□ -0.27
SFSWAP-209ENST00000540469 RPL5P46777 297 aaKnown RBP13.38□□□□□ -0.27
SFSWAP-209ENST00000540469 RARRES1P49788 294 aa13.38□□□□□ -0.27
SFSWAP-209ENST00000540469 GCNT1Q02742 428 aa13.38□□□□□ -0.27
SFSWAP-209ENST00000540469 C12orf56Q8IXR9 622 aa13.38□□□□□ -0.27
SFSWAP-209ENST00000540469 MKL1Q969V6 931 aa13.38□□□□□ -0.27
SFSWAP-209ENST00000540469 ADAMTS6Q9UKP5 1117 aa13.38□□□□□ -0.27
SFSWAP-209ENST00000540469 LAMB2P55268 1798 aa13.37□□□□□ -0.27
SFSWAP-209ENST00000540469 ITGAVP06756 1048 aa13.37□□□□□ -0.27
SFSWAP-209ENST00000540469 STIP1P31948 543 aaKnown RBP13.37□□□□□ -0.27
SFSWAP-209ENST00000540469 HPCAP84074 193 aa13.37□□□□□ -0.27
SFSWAP-209ENST00000540469 TBCCQ15814 346 aa13.37□□□□□ -0.27
SFSWAP-209ENST00000540469 ZNF394Q53GI3 561 aa13.37□□□□□ -0.27
SFSWAP-209ENST00000540469 TXNRD3NBQ6F5E7 133 aa13.37□□□□□ -0.27
SFSWAP-209ENST00000540469 TEKT1Q969V4 418 aa13.37□□□□□ -0.27
SFSWAP-209ENST00000540469 DOT1LQ8TEK3 1739 aa13.37□□□□□ -0.27
SFSWAP-209ENST00000540469 hCG_1818297A0A087WSY0 165 aa13.37□□□□□ -0.27
SFSWAP-209ENST00000540469 ARHGAP10A1A4S6 786 aa13.37□□□□□ -0.27
SFSWAP-209ENST00000540469 BUD23O43709 281 aaKnown RBP13.37□□□□□ -0.27
SFSWAP-209ENST00000540469 TMEM63AO94886 807 aa13.37□□□□□ -0.27
SFSWAP-209ENST00000540469 SNRPAP09012 282 aaKnown RBP13.37□□□□□ -0.27
SFSWAP-209ENST00000540469 NCKAP1LP55160 1127 aa13.37□□□□□ -0.27
SFSWAP-209ENST00000540469 TTC39BQ5VTQ0 682 aaPredicted RBP13.37□□□□□ -0.27
SFSWAP-209ENST00000540469 PLA2G4FQ68DD2 849 aa13.37□□□□□ -0.27
SFSWAP-209ENST00000540469 CDHR3Q6ZTQ4 885 aa13.37□□□□□ -0.27
SFSWAP-209ENST00000540469 DEFB107AQ8IZN7 70 aa13.37□□□□□ -0.27
SFSWAP-209ENST00000540469 PHF12Q96QT6 1004 aa13.37□□□□□ -0.27
SFSWAP-209ENST00000540469 CALN1Q9BXU9 219 aa13.37□□□□□ -0.27
SFSWAP-209ENST00000540469 TBX20Q9UMR3 447 aa13.37□□□□□ -0.27
SFSWAP-209ENST00000540469 SNCAIPQ9Y6H5 919 aa13.37□□□□□ -0.27
SFSWAP-209ENST00000540469 CAPN14A8MX76 684 aa13.36□□□□□ -0.27
SFSWAP-209ENST00000540469 DKC1O60832 514 aaKnown RBP eCLIP13.36□□□□□ -0.27
SFSWAP-209ENST00000540469 ZNF189O75820 626 aaPredicted RBP13.36□□□□□ -0.27
SFSWAP-209ENST00000540469 ETV4P43268 484 aa13.36□□□□□ -0.27
SFSWAP-209ENST00000540469 NOMO3P69849 1222 aa13.36□□□□□ -0.27
SFSWAP-209ENST00000540469 ITGA9Q13797 1035 aa13.36□□□□□ -0.27
SFSWAP-209ENST00000540469 OASLQ15646 514 aaKnown RBP13.36□□□□□ -0.27
SFSWAP-209ENST00000540469 DOK7Q18PE1 504 aa13.36□□□□□ -0.27
SFSWAP-209ENST00000540469 TRIM72Q6ZMU5 477 aa13.36□□□□□ -0.27
SFSWAP-209ENST00000540469 NDUFAF2Q8N183 169 aa13.36□□□□□ -0.27
SFSWAP-209ENST00000540469 LRGUKQ96M69 825 aa13.36□□□□□ -0.27
SFSWAP-209ENST00000540469 PRPF18Q99633 342 aaKnown RBP13.36□□□□□ -0.27
SFSWAP-209ENST00000540469 STRA6Q9BX79 667 aa13.36□□□□□ -0.27
SFSWAP-209ENST00000540469 MRPL1Q9BYD6 325 aaKnown RBP13.36□□□□□ -0.27
SFSWAP-209ENST00000540469 PACSIN3Q9UKS6 424 aa13.36□□□□□ -0.27
SFSWAP-209ENST00000540469 PLA2G4CQ9UP65 541 aa13.36□□□□□ -0.27
SFSWAP-209ENST00000540469 LZTS1Q9Y250 596 aa13.36□□□□□ -0.27
SFSWAP-209ENST00000540469 INPP5FQ9Y2H2 1132 aa13.36□□□□□ -0.27
SFSWAP-209ENST00000540469 PCDHGA4Q9Y5G9 962 aa13.36□□□□□ -0.27
SFSWAP-209ENST00000540469 MAD1L1Q9Y6D9 718 aa13.36□□□□□ -0.27
SFSWAP-209ENST00000540469 NHSQ6T4R5 1651 aa13.36□□□□□ -0.27
SFSWAP-209ENST00000540469 MCF2LO15068 1137 aa13.36□□□□□ -0.27
SFSWAP-209ENST00000540469 SORBS2O94875 1100 aaKnown RBP13.36□□□□□ -0.27
SFSWAP-209ENST00000540469 HLA-DRAP01903 254 aa13.36□□□□□ -0.27
SFSWAP-209ENST00000540469 YWHABP31946 246 aaKnown RBP13.36□□□□□ -0.27
SFSWAP-209ENST00000540469 STAT2P52630 851 aa13.36□□□□□ -0.27
SFSWAP-209ENST00000540469 GTF2BQ00403 316 aa13.36□□□□□ -0.27
SFSWAP-209ENST00000540469 CYP24A1Q07973 514 aa13.36□□□□□ -0.27
SFSWAP-209ENST00000540469 KRT81Q14533 505 aa13.36□□□□□ -0.27
SFSWAP-209ENST00000540469 MFSD4BQ5TF39 518 aa13.36□□□□□ -0.27
SFSWAP-209ENST00000540469 LZICQ8WZA0 190 aa13.36□□□□□ -0.27
SFSWAP-209ENST00000540469 FETUBQ9UGM5 382 aa13.36□□□□□ -0.27
SFSWAP-209ENST00000540469 POLIQ9UNA4 740 aa13.36□□□□□ -0.27
SFSWAP-209ENST00000540469 STRNO43815 780 aa13.36□□□□□ -0.27
SFSWAP-209ENST00000540469 SUPT3HO75486 399 aa13.36□□□□□ -0.27
SFSWAP-209ENST00000540469 GH2P01242 217 aa13.36□□□□□ -0.27
SFSWAP-209ENST00000540469 SERPINA6P08185 405 aa13.36□□□□□ -0.27
SFSWAP-209ENST00000540469 CCDC166P0CW27 439 aa13.36□□□□□ -0.27
SFSWAP-209ENST00000540469 QARSP47897 775 aaKnown RBP13.36□□□□□ -0.27
SFSWAP-209ENST00000540469 NRLP54845 237 aa13.36□□□□□ -0.27
SFSWAP-209ENST00000540469 EIF3EP60228 445 aaKnown RBP13.36□□□□□ -0.27
SFSWAP-209ENST00000540469 MROH9Q5TGP6 573 aa13.36□□□□□ -0.27
SFSWAP-209ENST00000540469 DRICH1Q6PGQ1 229 aaPredicted RBP13.36□□□□□ -0.27
SFSWAP-209ENST00000540469 KLHDC10Q6PID8 442 aa13.36□□□□□ -0.27
SFSWAP-209ENST00000540469 SLC26A11Q86WA9 606 aa13.36□□□□□ -0.27
SFSWAP-209ENST00000540469 ABRAQ8N0Z2 381 aa13.36□□□□□ -0.27
SFSWAP-209ENST00000540469 NKD2Q969F2 451 aaPredicted RBP13.36□□□□□ -0.27
SFSWAP-209ENST00000540469 FAF2Q96CS3 445 aa13.36□□□□□ -0.27
SFSWAP-209ENST00000540469 C7orf26Q96N11 449 aa13.36□□□□□ -0.27
SFSWAP-209ENST00000540469 ZC3H12CQ9C0D7 883 aaKnown RBP13.36□□□□□ -0.27
SFSWAP-209ENST00000540469 BTBD7Q9P203 1132 aa13.36□□□□□ -0.27
SFSWAP-209ENST00000540469 POLLQ9UGP5 575 aa13.36□□□□□ -0.27
SFSWAP-209ENST00000540469 COQ4Q9Y3A0 265 aa13.36□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 44.6 ms