RNA–Protein interactions for RNA: ENST00000539504.5

SYNE1-237, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 3,768 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-237ENST00000539504 FAM151AQ8WW52 585 aa11.74□□□□□ -0.53
SYNE1-237ENST00000539504 SLC44A1Q8WWI5 657 aa11.74□□□□□ -0.53
SYNE1-237ENST00000539504 CCDC124Q96CT7 223 aaKnown RBP11.74□□□□□ -0.53
SYNE1-237ENST00000539504 PHACTR1Q9C0D0 580 aa11.74□□□□□ -0.53
SYNE1-237ENST00000539504 ASCC2Q9H1I8 757 aaPredicted RBP11.74□□□□□ -0.53
SYNE1-237ENST00000539504 CISHQ9NSE2 258 aa11.74□□□□□ -0.53
SYNE1-237ENST00000539504 PCMTD2Q9NV79 361 aa11.74□□□□□ -0.53
SYNE1-237ENST00000539504 ZNF70Q9UC06 446 aaPredicted RBP11.74□□□□□ -0.53
SYNE1-237ENST00000539504 TAGLN3Q9UI15 199 aa11.74□□□□□ -0.53
SYNE1-237ENST00000539504 BTAF1O14981 1849 aa11.73□□□□□ -0.53
SYNE1-237ENST00000539504 MAP3K6O95382 1288 aa11.73□□□□□ -0.53
SYNE1-237ENST00000539504 CST3P01034 146 aaPredicted RBP11.73□□□□□ -0.53
SYNE1-237ENST00000539504 SNRPAP09012 282 aaKnown RBP11.73□□□□□ -0.53
SYNE1-237ENST00000539504 KDELR1P24390 212 aa11.73□□□□□ -0.53
SYNE1-237ENST00000539504 IL1R2P27930 398 aa11.73□□□□□ -0.53
SYNE1-237ENST00000539504 MYL6P60660 151 aa11.73□□□□□ -0.53
SYNE1-237ENST00000539504 TFAMQ00059 246 aaKnown RBP11.73□□□□□ -0.53
SYNE1-237ENST00000539504 ROR1Q01973 937 aa11.73□□□□□ -0.53
SYNE1-237ENST00000539504 TRMT5Q32P41 509 aaKnown RBP11.73□□□□□ -0.53
SYNE1-237ENST00000539504 C1orf228Q6PIY5 440 aa11.73□□□□□ -0.53
SYNE1-237ENST00000539504 ZCCHC23Q6ZST2 131 aa11.73□□□□□ -0.53
SYNE1-237ENST00000539504 RASSF3Q86WH2 238 aa11.73□□□□□ -0.53
SYNE1-237ENST00000539504 NLGN1Q8N2Q7 840 aa11.73□□□□□ -0.53
SYNE1-237ENST00000539504 CGRRF1Q99675 332 aa11.73□□□□□ -0.53
SYNE1-237ENST00000539504 SHCBP1LQ9BZQ2 653 aa11.73□□□□□ -0.53
SYNE1-237ENST00000539504 PXMP2Q9NR77 195 aa11.73□□□□□ -0.53
SYNE1-237ENST00000539504 NFASCO94856 1347 aa11.73□□□□□ -0.53
SYNE1-237ENST00000539504 KLHL33A6NCF5 533 aa11.73□□□□□ -0.53
SYNE1-237ENST00000539504 RNF8O76064 485 aa11.73□□□□□ -0.53
SYNE1-237ENST00000539504 RTN3O95197 1032 aaPredicted RBP11.73□□□□□ -0.53
SYNE1-237ENST00000539504 ETV4P43268 484 aa11.73□□□□□ -0.53
SYNE1-237ENST00000539504 TAP1Q03518 808 aa11.73□□□□□ -0.53
SYNE1-237ENST00000539504 EMC2Q15006 297 aa11.73□□□□□ -0.53
SYNE1-237ENST00000539504 TTC39BQ5VTQ0 682 aaPredicted RBP11.73□□□□□ -0.53
SYNE1-237ENST00000539504 SLFN12LQ6IEE8 588 aa11.73□□□□□ -0.53
SYNE1-237ENST00000539504 BBS12Q6ZW61 710 aa11.73□□□□□ -0.53
SYNE1-237ENST00000539504 SLC26A11Q86WA9 606 aa11.73□□□□□ -0.53
SYNE1-237ENST00000539504 EGFL6Q8IUX8 553 aa11.73□□□□□ -0.53
SYNE1-237ENST00000539504 ECSITQ9BQ95 431 aa11.73□□□□□ -0.53
SYNE1-237ENST00000539504 DHRS4Q9BTZ2 278 aa11.73□□□□□ -0.53
SYNE1-237ENST00000539504 MTMR12Q9C0I1 747 aa11.73□□□□□ -0.53
SYNE1-237ENST00000539504 KCNK4Q9NYG8 393 aa11.73□□□□□ -0.53
SYNE1-237ENST00000539504 ARHGAP28Q9P2N2 729 aa11.73□□□□□ -0.53
SYNE1-237ENST00000539504 TJP2Q9UDY2 1190 aa11.73□□□□□ -0.53
SYNE1-237ENST00000539504 ZC3H7BQ9UGR2 993 aaKnown RBP11.73□□□□□ -0.53
SYNE1-237ENST00000539504 PRR5-ARHGAP8B1AHC4 643 aa11.73□□□□□ -0.53
SYNE1-237ENST00000539504 RPS6KA3P51812 740 aa11.73□□□□□ -0.53
SYNE1-237ENST00000539504 ARHGAP8P85298 464 aa11.73□□□□□ -0.53
SYNE1-237ENST00000539504 ORC1Q13415 861 aa11.73□□□□□ -0.53
SYNE1-237ENST00000539504 LAMB3Q13751 1172 aa11.73□□□□□ -0.53
SYNE1-237ENST00000539504 UBAP2LQ14157 1087 aaKnown RBP11.73□□□□□ -0.53
SYNE1-237ENST00000539504 TAF5Q15542 800 aa11.73□□□□□ -0.53
SYNE1-237ENST00000539504 CCDC142Q17RM4 750 aa11.73□□□□□ -0.53
SYNE1-237ENST00000539504 TMEM132AQ24JP5 1023 aa11.73□□□□□ -0.53
SYNE1-237ENST00000539504 DNAL1Q4LDG9 190 aa11.73□□□□□ -0.53
SYNE1-237ENST00000539504 CCDC60Q8IWA6 550 aaPredicted RBP11.73□□□□□ -0.53
SYNE1-237ENST00000539504 SLC26A7Q8TE54 656 aa11.73□□□□□ -0.53
SYNE1-237ENST00000539504 GATA6Q92908 595 aa11.73□□□□□ -0.53
SYNE1-237ENST00000539504 PANX3Q96QZ0 392 aa11.73□□□□□ -0.53
SYNE1-237ENST00000539504 TUBGCP5Q96RT8 1024 aa11.73□□□□□ -0.53
SYNE1-237ENST00000539504 A0A1B0GVG6 124 aa11.72□□□□□ -0.53
SYNE1-237ENST00000539504 SMAPO00193 183 aa11.72□□□□□ -0.53
SYNE1-237ENST00000539504 LRCH4O75427 683 aa11.72□□□□□ -0.53
SYNE1-237ENST00000539504 LDHAP00338 332 aaKnown RBP11.72□□□□□ -0.53
SYNE1-237ENST00000539504 NR3C2P08235 984 aa11.72□□□□□ -0.53
SYNE1-237ENST00000539504 ASNSP08243 561 aa11.72□□□□□ -0.53
SYNE1-237ENST00000539504 KRT19P08727 400 aa11.72□□□□□ -0.53
SYNE1-237ENST00000539504 MROH9Q5TGP6 573 aa11.72□□□□□ -0.53
SYNE1-237ENST00000539504 WDR78Q5VTH9 848 aa11.72□□□□□ -0.53
SYNE1-237ENST00000539504 NET1Q7Z628 596 aaPredicted RBP11.72□□□□□ -0.53
SYNE1-237ENST00000539504 PYDC1Q8WXC3 89 aa11.72□□□□□ -0.53
SYNE1-237ENST00000539504 APOL6Q9BWW8 343 aa11.72□□□□□ -0.53
SYNE1-237ENST00000539504 CYP4F11Q9HBI6 524 aa11.72□□□□□ -0.53
SYNE1-237ENST00000539504 SLC7A8Q9UHI5 535 aa11.72□□□□□ -0.53
SYNE1-237ENST00000539504 SPDYE2BA6NHP3 402 aa11.72□□□□□ -0.53
SYNE1-237ENST00000539504 MAGEC1O60732 1142 aa11.72□□□□□ -0.53
SYNE1-237ENST00000539504 SPDYE6P0CI01 402 aa11.72□□□□□ -0.53
SYNE1-237ENST00000539504 ETS2P15036 469 aa11.72□□□□□ -0.53
SYNE1-237ENST00000539504 CCND2P30279 289 aa11.72□□□□□ -0.53
SYNE1-237ENST00000539504 MTHFD1LQ6UB35 978 aa11.72□□□□□ -0.53
SYNE1-237ENST00000539504 NDUFAF2Q8N183 169 aa11.72□□□□□ -0.53
SYNE1-237ENST00000539504 POU5F2Q8N7G0 328 aa11.72□□□□□ -0.53
SYNE1-237ENST00000539504 TFAP2BQ92481 460 aa11.72□□□□□ -0.53
SYNE1-237ENST00000539504 CENPKQ9BS16 269 aa11.72□□□□□ -0.53
SYNE1-237ENST00000539504 PPM1HQ9ULR3 514 aa11.72□□□□□ -0.53
SYNE1-237ENST00000539504 HEY1Q9Y5J3 304 aa11.72□□□□□ -0.53
SYNE1-237ENST00000539504 KAT6AQ92794 2004 aa11.72□□□□□ -0.53
SYNE1-237ENST00000539504 DCAF8L1A6NGE4 600 aa11.72□□□□□ -0.53
SYNE1-237ENST00000539504 PLA2G6O60733 806 aa11.72□□□□□ -0.53
SYNE1-237ENST00000539504 TM7SF2O76062 418 aa11.72□□□□□ -0.53
SYNE1-237ENST00000539504 LSM8O95777 96 aaKnown RBP11.72□□□□□ -0.53
SYNE1-237ENST00000539504 DHRS4L1P0CG22 281 aa11.72□□□□□ -0.53
SYNE1-237ENST00000539504 RXRBP28702 533 aa11.72□□□□□ -0.53
SYNE1-237ENST00000539504 SERPINB6P35237 376 aa11.72□□□□□ -0.53
SYNE1-237ENST00000539504 CDH6P55285 790 aa11.72□□□□□ -0.53
SYNE1-237ENST00000539504 FKBP1AP62942 108 aaKnown RBP11.72□□□□□ -0.53
SYNE1-237ENST00000539504 SLC25A3Q00325 362 aa11.72□□□□□ -0.53
SYNE1-237ENST00000539504 MMRN1Q13201 1228 aa11.72□□□□□ -0.53
SYNE1-237ENST00000539504 HIC1Q14526 733 aa11.72□□□□□ -0.53
SYNE1-237ENST00000539504 GSTA3Q16772 222 aa11.72□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms