RNA–Protein interactions for RNA: ENST00000537004.5

CLIP1-208, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 2,000 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-208ENST00000537004 ROR1Q01973 937 aa12.62□□□□□ -0.39
CLIP1-208ENST00000537004 CUL2Q13617 745 aa12.62□□□□□ -0.39
CLIP1-208ENST00000537004 NCOA4Q13772 614 aa12.62□□□□□ -0.39
CLIP1-208ENST00000537004 RAB33AQ14088 237 aa12.62□□□□□ -0.39
CLIP1-208ENST00000537004 MRPL58Q14197 206 aaKnown RBP12.62□□□□□ -0.39
CLIP1-208ENST00000537004 TCEAL1Q15170 157 aa12.62□□□□□ -0.39
CLIP1-208ENST00000537004 BEND6Q5SZJ8 279 aaPredicted RBP12.62□□□□□ -0.39
CLIP1-208ENST00000537004 CD302Q8IX05 232 aa12.62□□□□□ -0.39
CLIP1-208ENST00000537004 SLC7A14Q8TBB6 771 aa12.62□□□□□ -0.39
CLIP1-208ENST00000537004 HES6Q96HZ4 224 aa12.62□□□□□ -0.39
CLIP1-208ENST00000537004 DPP3Q9NY33 737 aa12.62□□□□□ -0.39
CLIP1-208ENST00000537004 CTTNBP2NLQ9P2B4 639 aa12.62□□□□□ -0.39
CLIP1-208ENST00000537004 AMFRQ9UKV5 643 aa12.62□□□□□ -0.39
CLIP1-208ENST00000537004 BACE2Q9Y5Z0 518 aa12.62□□□□□ -0.39
CLIP1-208ENST00000537004 PDCD11Q14690 1871 aaKnown RBP12.62□□□□□ -0.39
CLIP1-208ENST00000537004 VPS13AQ96RL7 3174 aa12.62□□□□□ -0.39
CLIP1-208ENST00000537004 WDR27A2RRH5 827 aa12.62□□□□□ -0.39
CLIP1-208ENST00000537004 SYN3O14994 580 aa12.62□□□□□ -0.39
CLIP1-208ENST00000537004 CCL16O15467 120 aa12.62□□□□□ -0.39
CLIP1-208ENST00000537004 SASH3O75995 380 aa12.62□□□□□ -0.39
CLIP1-208ENST00000537004 CLSTN1O94985 981 aa12.62□□□□□ -0.39
CLIP1-208ENST00000537004 CALCAP01258 141 aa12.62□□□□□ -0.39
CLIP1-208ENST00000537004 ASGR2P07307 311 aa12.62□□□□□ -0.39
CLIP1-208ENST00000537004 OR4Q2P0C623 313 aa12.62□□□□□ -0.39
CLIP1-208ENST00000537004 ACO1P21399 889 aaKnown RBP12.62□□□□□ -0.39
CLIP1-208ENST00000537004 TBXAS1P24557 533 aaPredicted RBP12.62□□□□□ -0.39
CLIP1-208ENST00000537004 AARSP49588 968 aaKnown RBP eCLIP12.62□□□□□ -0.39
CLIP1-208ENST00000537004 NTHL1P78549 312 aa12.62□□□□□ -0.39
CLIP1-208ENST00000537004 SURF1Q15526 300 aa12.62□□□□□ -0.39
CLIP1-208ENST00000537004 CTXN3Q4LDR2 81 aa12.62□□□□□ -0.39
CLIP1-208ENST00000537004 SLC8B1Q6J4K2 584 aa12.62□□□□□ -0.39
CLIP1-208ENST00000537004 DSTYKQ6XUX3 929 aa12.62□□□□□ -0.39
CLIP1-208ENST00000537004 CCDC149Q6ZUS6 474 aa12.62□□□□□ -0.39
CLIP1-208ENST00000537004 CALR3Q96L12 384 aaKnown RBP12.62□□□□□ -0.39
CLIP1-208ENST00000537004 LRRC1Q9BTT6 524 aa12.62□□□□□ -0.39
CLIP1-208ENST00000537004 SELENOOQ9BVL4 669 aa12.62□□□□□ -0.39
CLIP1-208ENST00000537004 FUT8Q9BYC5 575 aa12.62□□□□□ -0.39
CLIP1-208ENST00000537004 IMPG2Q9BZV3 1241 aa12.62□□□□□ -0.39
CLIP1-208ENST00000537004 MTMR12Q9C0I1 747 aa12.62□□□□□ -0.39
CLIP1-208ENST00000537004 SMOC2Q9H3U7 446 aa12.62□□□□□ -0.39
CLIP1-208ENST00000537004 LIMD1Q9UGP4 676 aa12.62□□□□□ -0.39
CLIP1-208ENST00000537004 POLIQ9UNA4 740 aa12.62□□□□□ -0.39
CLIP1-208ENST00000537004 C2CD2Q9Y426 696 aa12.62□□□□□ -0.39
CLIP1-208ENST00000537004 M0QZQ0 153 aa12.61□□□□□ -0.39
CLIP1-208ENST00000537004 PIRO00625 290 aa12.61□□□□□ -0.39
CLIP1-208ENST00000537004 XPOTO43592 962 aaKnown RBP12.61□□□□□ -0.39
CLIP1-208ENST00000537004 ZMYND10O75800 440 aa12.61□□□□□ -0.39
CLIP1-208ENST00000537004 BPIFB4P59827 614 aa12.61□□□□□ -0.39
CLIP1-208ENST00000537004 RNASE9P60153 205 aaKnown RBP12.61□□□□□ -0.39
CLIP1-208ENST00000537004 LIN9Q5TKA1 542 aa12.61□□□□□ -0.39
CLIP1-208ENST00000537004 KRT222Q8N1A0 295 aa12.61□□□□□ -0.39
CLIP1-208ENST00000537004 CMASQ8NFW8 434 aaPredicted RBP12.61□□□□□ -0.39
CLIP1-208ENST00000537004 PRKD2Q9BZL6 878 aa12.61□□□□□ -0.39
CLIP1-208ENST00000537004 PIDD1Q9HB75 910 aa12.61□□□□□ -0.39
CLIP1-208ENST00000537004 DPP7Q9UHL4 492 aa12.61□□□□□ -0.39
CLIP1-208ENST00000537004 RAPGEFL1Q9UHV5 662 aa12.61□□□□□ -0.39
CLIP1-208ENST00000537004 PCDHB8Q9UN66 801 aa12.61□□□□□ -0.39
CLIP1-208ENST00000537004 DERAQ9Y315 318 aa12.61□□□□□ -0.39
CLIP1-208ENST00000537004 ATMINO43313 823 aaPredicted RBP12.61□□□□□ -0.39
CLIP1-208ENST00000537004 CEP104O60308 925 aa12.61□□□□□ -0.39
CLIP1-208ENST00000537004 ASS1P00966 412 aaKnown RBP12.61□□□□□ -0.39
CLIP1-208ENST00000537004 ALADP13716 330 aa12.61□□□□□ -0.39
CLIP1-208ENST00000537004 DUOXA2Q1HG44 320 aa12.61□□□□□ -0.39
CLIP1-208ENST00000537004 CLEC16AQ2KHT3 1053 aa12.61□□□□□ -0.39
CLIP1-208ENST00000537004 C11orf63Q6NUN7 778 aa12.61□□□□□ -0.39
CLIP1-208ENST00000537004 TMEM270Q6UE05 265 aa12.61□□□□□ -0.39
CLIP1-208ENST00000537004 GRASPQ7Z6J2 395 aaPredicted RBP12.61□□□□□ -0.39
CLIP1-208ENST00000537004 ZNF677Q86XU0 584 aa12.61□□□□□ -0.39
CLIP1-208ENST00000537004 C1orf127Q8N9H9 656 aa12.61□□□□□ -0.39
CLIP1-208ENST00000537004 APPL2Q8NEU8 664 aa12.61□□□□□ -0.39
CLIP1-208ENST00000537004 ZNF461Q8TAF7 563 aa12.61□□□□□ -0.39
CLIP1-208ENST00000537004 ACTRT1Q8TDG2 376 aa12.61□□□□□ -0.39
CLIP1-208ENST00000537004 HDAC7Q8WUI4 952 aa12.61□□□□□ -0.39
CLIP1-208ENST00000537004 SENP8Q96LD8 212 aa12.61□□□□□ -0.39
CLIP1-208ENST00000537004 TMEM209Q96SK2 561 aa12.61□□□□□ -0.39
CLIP1-208ENST00000537004 WDR6Q9NNW5 1121 aaKnown RBP12.61□□□□□ -0.39
CLIP1-208ENST00000537004 HCFC1R1Q9NWW0 138 aa12.61□□□□□ -0.39
CLIP1-208ENST00000537004 ZDHHC7Q9NXF8 308 aa12.61□□□□□ -0.39
CLIP1-208ENST00000537004 GTF3C4Q9UKN8 822 aa12.61□□□□□ -0.39
CLIP1-208ENST00000537004 NR2E1Q9Y466 385 aa12.61□□□□□ -0.39
CLIP1-208ENST00000537004 MYO15AQ9UKN7 3530 aa12.6□□□□□ -0.39
CLIP1-208ENST00000537004 DOCK6Q96HP0 2047 aa12.6□□□□□ -0.39
CLIP1-208ENST00000537004 DMDP11532 3685 aa12.6□□□□□ -0.39
CLIP1-208ENST00000537004 ZDBF2Q9HCK1 2354 aa12.6□□□□□ -0.39
CLIP1-208ENST00000537004 MTA2O94776 668 aa12.6□□□□□ -0.39
CLIP1-208ENST00000537004 IL18RAPO95256 599 aa12.6□□□□□ -0.39
CLIP1-208ENST00000537004 SEC24AO95486 1093 aa12.6□□□□□ -0.39
CLIP1-208ENST00000537004 CST3P01034 146 aaPredicted RBP12.6□□□□□ -0.39
CLIP1-208ENST00000537004 CYP1A2P05177 515 aa12.6□□□□□ -0.39
CLIP1-208ENST00000537004 YWHAHQ04917 246 aaPredicted RBP12.6□□□□□ -0.39
CLIP1-208ENST00000537004 PPM1LQ5SGD2 360 aa12.6□□□□□ -0.39
CLIP1-208ENST00000537004 ACAD10Q6JQN1 1059 aa12.6□□□□□ -0.39
CLIP1-208ENST00000537004 ZNF280DQ6N043 979 aa12.6□□□□□ -0.39
CLIP1-208ENST00000537004 C8orf74Q6P047 294 aa12.6□□□□□ -0.39
CLIP1-208ENST00000537004 TDRD5Q8NAT2 981 aaKnown RBP12.6□□□□□ -0.39
CLIP1-208ENST00000537004 RUBCNQ92622 972 aa12.6□□□□□ -0.39
CLIP1-208ENST00000537004 ZNF653Q96CK0 615 aa12.6□□□□□ -0.39
CLIP1-208ENST00000537004 PGLYRP2Q96PD5 576 aa12.6□□□□□ -0.39
CLIP1-208ENST00000537004 LRFN3Q9BTN0 628 aa12.6□□□□□ -0.39
CLIP1-208ENST00000537004 CHORDC1Q9UHD1 332 aaPredicted RBP12.6□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms