RNA–Protein interactions for RNA: ENST00000536239.1

SKA3-207, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 438 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-207ENST00000536239 CFHR1Q03591 330 aa3.1□□□□□ -1.91
SKA3-207ENST00000536239 CYP1B1Q16678 543 aa3.1□□□□□ -1.91
SKA3-207ENST00000536239 C4orf46Q504U0 113 aa3.1□□□□□ -1.91
SKA3-207ENST00000536239 CT47A1Q5JQC4 288 aaPredicted RBP3.1□□□□□ -1.91
SKA3-207ENST00000536239 RNF219Q5W0B1 726 aaPredicted RBP3.1□□□□□ -1.91
SKA3-207ENST00000536239 ANO7Q6IWH7 933 aa3.1□□□□□ -1.91
SKA3-207ENST00000536239 SFTPA1Q8IWL2 248 aa3.1□□□□□ -1.91
SKA3-207ENST00000536239 CPA6Q8N4T0 437 aa3.1□□□□□ -1.91
SKA3-207ENST00000536239 POLR3GLQ9BT43 218 aa3.1□□□□□ -1.91
SKA3-207ENST00000536239 MRPL46Q9H2W6 279 aaKnown RBP3.1□□□□□ -1.91
SKA3-207ENST00000536239 WDCPQ9H6R7 721 aa3.1□□□□□ -1.91
SKA3-207ENST00000536239 ST6GALNAC1Q9NSC7 600 aaPredicted RBP3.1□□□□□ -1.91
SKA3-207ENST00000536239 ZBTB40Q9NUA8 1239 aa3.1□□□□□ -1.91
SKA3-207ENST00000536239 POLHQ9Y253 713 aa3.1□□□□□ -1.91
SKA3-207ENST00000536239 ZSCAN21Q9Y5A6 473 aaPredicted RBP3.1□□□□□ -1.91
SKA3-207ENST00000536239 PCDHA3Q9Y5H8 950 aa3.1□□□□□ -1.91
SKA3-207ENST00000536239 IFITM10A6NMD0 228 aa3.09□□□□□ -1.91
SKA3-207ENST00000536239 PRSS47A8MTI9 375 aa3.09□□□□□ -1.91
SKA3-207ENST00000536239 ARIH2O95376 493 aa3.09□□□□□ -1.91
SKA3-207ENST00000536239 MT-CO3P00414 261 aa3.09□□□□□ -1.91
SKA3-207ENST00000536239 FGAP02671 866 aa3.09□□□□□ -1.91
SKA3-207ENST00000536239 TNNT2P45379 298 aaPredicted RBP3.09□□□□□ -1.91
SKA3-207ENST00000536239 MTX1Q13505 466 aa3.09□□□□□ -1.91
SKA3-207ENST00000536239 ASIC2Q16515 512 aa3.09□□□□□ -1.91
SKA3-207ENST00000536239 INAVAQ3KP66 663 aa3.09□□□□□ -1.91
SKA3-207ENST00000536239 C9orf50Q5SZB4 431 aa3.09□□□□□ -1.91
SKA3-207ENST00000536239 TMTC4Q5T4D3 741 aa3.09□□□□□ -1.91
SKA3-207ENST00000536239 DEPDC1Q5TB30 811 aa3.09□□□□□ -1.91
SKA3-207ENST00000536239 GFI1BQ5VTD9 330 aa3.09□□□□□ -1.91
SKA3-207ENST00000536239 MTERF4Q7Z6M4 381 aaKnown RBP3.09□□□□□ -1.91
SKA3-207ENST00000536239 MMP21Q8N119 569 aa3.09□□□□□ -1.91
SKA3-207ENST00000536239 C1orf162Q8NEQ5 155 aaPredicted RBP3.09□□□□□ -1.91
SKA3-207ENST00000536239 DNASE2BQ8WZ79 361 aa3.09□□□□□ -1.91
SKA3-207ENST00000536239 ZNF622Q969S3 477 aaKnown RBP eCLIP3.09□□□□□ -1.91
SKA3-207ENST00000536239 FAM84BQ96KN1 310 aaPredicted RBP3.09□□□□□ -1.91
SKA3-207ENST00000536239 PRR25Q96S07 402 aa3.09□□□□□ -1.91
SKA3-207ENST00000536239 PNNQ9H307 717 aaKnown RBP3.09□□□□□ -1.91
SKA3-207ENST00000536239 TMEM51Q9NW97 253 aa3.09□□□□□ -1.91
SKA3-207ENST00000536239 MKS1Q9NXB0 559 aa3.09□□□□□ -1.91
SKA3-207ENST00000536239 AMFRQ9UKV5 643 aa3.09□□□□□ -1.91
SKA3-207ENST00000536239 FER1L4A9Z1Z3 1794 aa3.09□□□□□ -1.91
SKA3-207ENST00000536239 KLHL33A6NCF5 533 aa3.08□□□□□ -1.92
SKA3-207ENST00000536239 CSF1RP07333 972 aa3.08□□□□□ -1.92
SKA3-207ENST00000536239 NGFRP08138 427 aa3.08□□□□□ -1.92
SKA3-207ENST00000536239 TNFRSF1BP20333 461 aa3.08□□□□□ -1.92
SKA3-207ENST00000536239 PDE6CP51160 858 aa3.08□□□□□ -1.92
SKA3-207ENST00000536239 IRX3P78415 501 aaPredicted RBP3.08□□□□□ -1.92
SKA3-207ENST00000536239 PSG6Q00889 435 aa3.08□□□□□ -1.92
SKA3-207ENST00000536239 SEC23BQ15437 767 aa3.08□□□□□ -1.92
SKA3-207ENST00000536239 AMOTQ4VCS5 1084 aa3.08□□□□□ -1.92
SKA3-207ENST00000536239 AWAT1Q58HT5 328 aa3.08□□□□□ -1.92
SKA3-207ENST00000536239 CAND1Q86VP6 1230 aaKnown RBP3.08□□□□□ -1.92
SKA3-207ENST00000536239 TMPRSS12Q86WS5 348 aa3.08□□□□□ -1.92
SKA3-207ENST00000536239 CNPY4Q8N129 248 aa3.08□□□□□ -1.92
SKA3-207ENST00000536239 SIRT6Q8N6T7 355 aa3.08□□□□□ -1.92
SKA3-207ENST00000536239 OSCP1Q8WVF1 389 aa3.08□□□□□ -1.92
SKA3-207ENST00000536239 IGFBPL1Q8WX77 278 aa3.08□□□□□ -1.92
SKA3-207ENST00000536239 TRIM44Q96DX7 344 aaPredicted RBP3.08□□□□□ -1.92
SKA3-207ENST00000536239 ZNF479Q96JC4 524 aa3.08□□□□□ -1.92
SKA3-207ENST00000536239 TMEM204Q9BSN7 226 aa3.08□□□□□ -1.92
SKA3-207ENST00000536239 MRPL44Q9H9J2 332 aaKnown RBP3.08□□□□□ -1.92
SKA3-207ENST00000536239 SERPINB13Q9UIV8 391 aa3.08□□□□□ -1.92
SKA3-207ENST00000536239 MCM8Q9UJA3 840 aa3.08□□□□□ -1.92
SKA3-207ENST00000536239 NOTCH3Q9UM47 2321 aa3.08□□□□□ -1.92
SKA3-207ENST00000536239 IGLV5-39A0A0G2JS06 123 aa3.07□□□□□ -1.92
SKA3-207ENST00000536239 hCG_1984214I3L0E3 225 aa3.07□□□□□ -1.92
SKA3-207ENST00000536239 PCDHGA12O60330 932 aa3.07□□□□□ -1.92
SKA3-207ENST00000536239 AHSGP02765 367 aa3.07□□□□□ -1.92
SKA3-207ENST00000536239 FGF2P09038 288 aa3.07□□□□□ -1.92
SKA3-207ENST00000536239 PLA2G2AP14555 144 aa3.07□□□□□ -1.92
SKA3-207ENST00000536239 PHKG2P15735 406 aa3.07□□□□□ -1.92
SKA3-207ENST00000536239 TERF1P54274 439 aa3.07□□□□□ -1.92
SKA3-207ENST00000536239 FAM193AP78312 1265 aa3.07□□□□□ -1.92
SKA3-207ENST00000536239 SETQ01105 290 aaPredicted RBP3.07□□□□□ -1.92
SKA3-207ENST00000536239 LY6KQ17RY6 165 aa3.07□□□□□ -1.92
SKA3-207ENST00000536239 FBXL22Q6P050 247 aa3.07□□□□□ -1.92
SKA3-207ENST00000536239 DPY19L3Q6ZPD9 716 aa3.07□□□□□ -1.92
SKA3-207ENST00000536239 UBE2Q1Q7Z7E8 422 aa3.07□□□□□ -1.92
SKA3-207ENST00000536239 FOXP4Q8IVH2 680 aaPredicted RBP3.07□□□□□ -1.92
SKA3-207ENST00000536239 CBARPQ8N350 705 aaPredicted RBP3.07□□□□□ -1.92
SKA3-207ENST00000536239 FAXDC2Q96IV6 333 aa3.07□□□□□ -1.92
SKA3-207ENST00000536239 LMLNQ96KR4 655 aa3.07□□□□□ -1.92
SKA3-207ENST00000536239 ZNF830Q96NB3 372 aaPredicted RBP3.07□□□□□ -1.92
SKA3-207ENST00000536239 MOGAT1Q96PD6 335 aa3.07□□□□□ -1.92
SKA3-207ENST00000536239 MEIS3Q99687 375 aa3.07□□□□□ -1.92
SKA3-207ENST00000536239 SELENONQ9NZV5 590 aa3.07□□□□□ -1.92
SKA3-207ENST00000536239 ABCF2Q9UG63 623 aa3.07□□□□□ -1.92
SKA3-207ENST00000536239 FEZ2Q9UHY8 353 aaPredicted RBP3.07□□□□□ -1.92
SKA3-207ENST00000536239 MRPS17Q9Y2R5 130 aaKnown RBP3.07□□□□□ -1.92
SKA3-207ENST00000536239 LAS1LQ9Y4W2 734 aaKnown RBP3.07□□□□□ -1.92
SKA3-207ENST00000536239 PCDHGA9Q9Y5G4 932 aaKnown RBP3.07□□□□□ -1.92
SKA3-207ENST00000536239 PCDHGA8Q9Y5G5 932 aa3.07□□□□□ -1.92
SKA3-207ENST00000536239 PCDHGA7Q9Y5G6 932 aa3.07□□□□□ -1.92
SKA3-207ENST00000536239 PCDHGA6Q9Y5G7 932 aa3.07□□□□□ -1.92
SKA3-207ENST00000536239 PCDHGA3Q9Y5H0 932 aa3.07□□□□□ -1.92
SKA3-207ENST00000536239 EEA1Q15075 1411 aa3.07□□□□□ -1.92
SKA3-207ENST00000536239 GOLGA6L3A6NEY3 463 aa3.06□□□□□ -1.92
SKA3-207ENST00000536239 VNN1O95497 513 aa3.06□□□□□ -1.92
SKA3-207ENST00000536239 IGKV3-20P01619 116 aa3.06□□□□□ -1.92
SKA3-207ENST00000536239 TNFRSF8P28908 595 aa3.06□□□□□ -1.92
Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms