RNA–Protein interactions for RNA: ENST00000535236.5

SFSWAP-203, Transcript of splicing factor SWAP, humanhuman

TSL 1 (best)

Gene SFSWAP, Length 5,593 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-203ENST00000535236 RMND5AQ9H871 391 aa18.8■□□□□ 0.6
SFSWAP-203ENST00000535236 STARD7Q9NQZ5 370 aa18.8■□□□□ 0.6
SFSWAP-203ENST00000535236 LRRC7Q96NW7 1537 aa18.8■□□□□ 0.6
SFSWAP-203ENST00000535236 SLC12A8A0AV02 714 aa18.8■□□□□ 0.6
SFSWAP-203ENST00000535236 SLC37A4O43826 429 aa18.8■□□□□ 0.6
SFSWAP-203ENST00000535236 FBXO21O94952 628 aa18.8■□□□□ 0.6
SFSWAP-203ENST00000535236 ZNF280DQ6N043 979 aa18.8■□□□□ 0.6
SFSWAP-203ENST00000535236 DPF3Q92784 378 aa18.8■□□□□ 0.6
SFSWAP-203ENST00000535236 CLPBQ9H078 707 aa18.8■□□□□ 0.6
SFSWAP-203ENST00000535236 TOMM70O94826 608 aa18.8■□□□□ 0.6
SFSWAP-203ENST00000535236 ENDOD1O94919 500 aa18.8■□□□□ 0.6
SFSWAP-203ENST00000535236 BACE1P56817 501 aa18.8■□□□□ 0.6
SFSWAP-203ENST00000535236 RAD9BQ6WBX8 426 aa18.8■□□□□ 0.6
SFSWAP-203ENST00000535236 SLC13A5Q86YT5 568 aaPredicted RBP18.8■□□□□ 0.6
SFSWAP-203ENST00000535236 GPRC5CQ9NQ84 441 aa18.8■□□□□ 0.6
SFSWAP-203ENST00000535236 MED14O60244 1454 aa18.8■□□□□ 0.6
SFSWAP-203ENST00000535236 hCG_2014768A0A024R1R8 64 aa18.8■□□□□ 0.6
SFSWAP-203ENST00000535236 ACADMP11310 421 aa18.8■□□□□ 0.6
SFSWAP-203ENST00000535236 GUCA1AP43080 201 aaPredicted RBP18.8■□□□□ 0.6
SFSWAP-203ENST00000535236 CCZ1BP86790 482 aa18.8■□□□□ 0.6
SFSWAP-203ENST00000535236 CCZ1P86791 482 aaPredicted RBP18.8■□□□□ 0.6
SFSWAP-203ENST00000535236 CCNJLQ8IV13 435 aa18.8■□□□□ 0.6
SFSWAP-203ENST00000535236 KIAA2013Q8IYS2 634 aa18.8■□□□□ 0.6
SFSWAP-203ENST00000535236 LHX1P48742 406 aa18.79■□□□□ 0.6
SFSWAP-203ENST00000535236 ATN1P54259 1190 aaPredicted RBP18.79■□□□□ 0.6
SFSWAP-203ENST00000535236 PPP4CP60510 307 aa18.79■□□□□ 0.6
SFSWAP-203ENST00000535236 CAPRIN2Q6IMN6 1127 aaKnown RBP18.79■□□□□ 0.6
SFSWAP-203ENST00000535236 ZNF614Q8N883 585 aa18.79■□□□□ 0.6
SFSWAP-203ENST00000535236 ACER1Q8TDN7 264 aa18.79■□□□□ 0.6
SFSWAP-203ENST00000535236 ZNF333Q96JL9 665 aa18.79■□□□□ 0.6
SFSWAP-203ENST00000535236 DPP7Q9UHL4 492 aa18.79■□□□□ 0.6
SFSWAP-203ENST00000535236 LNPEPQ9UIQ6 1025 aa18.79■□□□□ 0.6
SFSWAP-203ENST00000535236 RUVBL2Q9Y230 463 aaKnown RBP18.79■□□□□ 0.6
SFSWAP-203ENST00000535236 SGPL1O95470 568 aa18.79■□□□□ 0.6
SFSWAP-203ENST00000535236 ERVK-10P10266 1014 aa18.79■□□□□ 0.6
SFSWAP-203ENST00000535236 FNTAP49354 379 aa18.79■□□□□ 0.6
SFSWAP-203ENST00000535236 STX5Q13190 355 aa18.79■□□□□ 0.6
SFSWAP-203ENST00000535236 ANGPT1Q15389 498 aa18.79■□□□□ 0.6
SFSWAP-203ENST00000535236 FUT11Q495W5 492 aa18.79■□□□□ 0.6
SFSWAP-203ENST00000535236 TC2NQ8N9U0 490 aa18.79■□□□□ 0.6
SFSWAP-203ENST00000535236 CCDC126Q96EE4 140 aa18.79■□□□□ 0.6
SFSWAP-203ENST00000535236 ZSWIM1Q9BR11 485 aa18.79■□□□□ 0.6
SFSWAP-203ENST00000535236 GLRA3O75311 464 aa18.79■□□□□ 0.6
SFSWAP-203ENST00000535236 CSTF3Q12996 717 aaKnown RBP18.79■□□□□ 0.6
SFSWAP-203ENST00000535236 C9orf131Q5VYM1 1079 aa18.79■□□□□ 0.6
SFSWAP-203ENST00000535236 GFM2Q969S9 779 aaKnown RBP18.79■□□□□ 0.6
SFSWAP-203ENST00000535236 SHCBP1LQ9BZQ2 653 aa18.79■□□□□ 0.6
SFSWAP-203ENST00000535236 IMPAD1Q9NX62 359 aa18.79■□□□□ 0.6
SFSWAP-203ENST00000535236 RPS6KB2Q9UBS0 482 aa18.79■□□□□ 0.6
SFSWAP-203ENST00000535236 M0R3G1 203 aa18.79■□□□□ 0.6
SFSWAP-203ENST00000535236 SERPINB8P50452 374 aa18.79■□□□□ 0.6
SFSWAP-203ENST00000535236 MAP3K7CLP57077 242 aa18.79■□□□□ 0.6
SFSWAP-203ENST00000535236 PLCL1Q15111 1095 aa18.79■□□□□ 0.6
SFSWAP-203ENST00000535236 DDX42Q86XP3 938 aaKnown RBP eCLIP18.79■□□□□ 0.6
SFSWAP-203ENST00000535236 FAM172AQ8WUF8 416 aa18.79■□□□□ 0.6
SFSWAP-203ENST00000535236 SEC16BQ96JE7 1060 aa18.79■□□□□ 0.6
SFSWAP-203ENST00000535236 FAR2Q96K12 515 aa18.79■□□□□ 0.6
SFSWAP-203ENST00000535236 CGRRF1Q99675 332 aa18.79■□□□□ 0.6
SFSWAP-203ENST00000535236 LZTS1Q9Y250 596 aa18.79■□□□□ 0.6
SFSWAP-203ENST00000535236 FAM47E-STBD1D6RA91 191 aa18.79■□□□□ 0.6
SFSWAP-203ENST00000535236 SKAP2O75563 359 aaPredicted RBP18.79■□□□□ 0.6
SFSWAP-203ENST00000535236 GYPCP04921 128 aa18.79■□□□□ 0.6
SFSWAP-203ENST00000535236 OTOAQ7RTW8 1153 aa18.79■□□□□ 0.6
SFSWAP-203ENST00000535236 NSL1Q96IY1 281 aa18.79■□□□□ 0.6
SFSWAP-203ENST00000535236 CIPCQ9C0C6 399 aa18.79■□□□□ 0.6
SFSWAP-203ENST00000535236 DCDC2Q9UHG0 476 aa18.79■□□□□ 0.6
SFSWAP-203ENST00000535236 PCDHB12Q9Y5F1 795 aa18.79■□□□□ 0.6
SFSWAP-203ENST00000535236 EIF3HO15372 352 aaKnown RBP eCLIP18.78■□□□□ 0.62e-8■■□□□ 11.9
SFSWAP-203ENST00000535236 CRTAMO95727 393 aa18.78■□□□□ 0.6
SFSWAP-203ENST00000535236 AMPD2Q01433 879 aa18.78■□□□□ 0.6
SFSWAP-203ENST00000535236 GALNTL6Q49A17 601 aa18.78■□□□□ 0.6
SFSWAP-203ENST00000535236 ICE2Q659A1 982 aa18.78■□□□□ 0.6
SFSWAP-203ENST00000535236 CBWD2Q8IUF1 395 aa18.78■□□□□ 0.6
SFSWAP-203ENST00000535236 MMGT1Q8N4V1 131 aa18.78■□□□□ 0.6
SFSWAP-203ENST00000535236 HASPINQ8TF76 798 aa18.78■□□□□ 0.6
SFSWAP-203ENST00000535236 NFKBIZQ9BYH8 718 aa18.78■□□□□ 0.6
SFSWAP-203ENST00000535236 EZH2Q15910 746 aaKnown RBP18.78■□□□□ 0.6
SFSWAP-203ENST00000535236 TRPM8Q7Z2W7 1104 aa18.78■□□□□ 0.6
SFSWAP-203ENST00000535236 SLC44A2Q8IWA5 706 aaPredicted RBP18.78■□□□□ 0.6
SFSWAP-203ENST00000535236 GBA2Q9HCG7 927 aaPredicted RBP18.78■□□□□ 0.6
SFSWAP-203ENST00000535236 ALBP02768 609 aa18.78■□□□□ 0.6
SFSWAP-203ENST00000535236 EPHX2P34913 555 aa18.78■□□□□ 0.6
SFSWAP-203ENST00000535236 DAB2IPQ5VWQ8 1189 aa18.78■□□□□ 0.6
SFSWAP-203ENST00000535236 TPCN2Q8NHX9 752 aa18.78■□□□□ 0.6
SFSWAP-203ENST00000535236 PRMT6Q96LA8 375 aaPredicted RBP18.78■□□□□ 0.6
SFSWAP-203ENST00000535236 ERGIC2Q96RQ1 377 aa18.78■□□□□ 0.6
SFSWAP-203ENST00000535236 PLA2G4CQ9UP65 541 aa18.78■□□□□ 0.6
SFSWAP-203ENST00000535236 SDR42E2A6NKP2 422 aa18.78■□□□□ 0.6
SFSWAP-203ENST00000535236 CKBP12277 381 aa18.78■□□□□ 0.6
SFSWAP-203ENST00000535236 HPGDP15428 266 aa18.78■□□□□ 0.6
SFSWAP-203ENST00000535236 MAGEB10Q96LZ2 347 aaPredicted RBP18.78■□□□□ 0.6
SFSWAP-203ENST00000535236 WDR41Q9HAD4 459 aa18.78■□□□□ 0.6
SFSWAP-203ENST00000535236 A0A1B0GW55 424 aa18.77■□□□□ 0.6
SFSWAP-203ENST00000535236 TIMM44O43615 452 aa18.77■□□□□ 0.6
SFSWAP-203ENST00000535236 DUX4L2P0CJ85 424 aa18.77■□□□□ 0.6
SFSWAP-203ENST00000535236 DUX4L3P0CJ86 424 aa18.77■□□□□ 0.6
SFSWAP-203ENST00000535236 DUX4L4P0CJ87 422 aa18.77■□□□□ 0.6
SFSWAP-203ENST00000535236 DUX4L5P0CJ88 424 aa18.77■□□□□ 0.6
SFSWAP-203ENST00000535236 DUX4L6P0CJ89 424 aa18.77■□□□□ 0.6
SFSWAP-203ENST00000535236 DUX4L7P0CJ90 424 aa18.77■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms