RNA–Protein interactions for RNA: ENST00000534106.2

CHMP4A-208, Transcript of charged multivesicular body protein 4A, humanhuman

TSL 5

Gene CHMP4A, Length 370 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4A-208ENST00000534106 MILR1Q7Z6M3 343 aa3.39□□□□□ -1.87
CHMP4A-208ENST00000534106 FAM228AQ86W67 206 aa3.39□□□□□ -1.87
CHMP4A-208ENST00000534106 PALB2Q86YC2 1186 aa3.39□□□□□ -1.87
CHMP4A-208ENST00000534106 ZNF280BQ86YH2 543 aa3.39□□□□□ -1.87
CHMP4A-208ENST00000534106 TBC1D10CQ8IV04 446 aa3.39□□□□□ -1.87
CHMP4A-208ENST00000534106 PALM2Q8IXS6 379 aa3.39□□□□□ -1.87
CHMP4A-208ENST00000534106 FAM26EQ8N5C1 309 aa3.39□□□□□ -1.87
CHMP4A-208ENST00000534106 SECISBP2LQ93073 1101 aaKnown RBP3.39□□□□□ -1.87
CHMP4A-208ENST00000534106 PPP1R14AQ96A00 147 aa3.39□□□□□ -1.87
CHMP4A-208ENST00000534106 B3GALT6Q96L58 329 aa3.39□□□□□ -1.87
CHMP4A-208ENST00000534106 PIGSQ96S52 555 aa3.39□□□□□ -1.87
CHMP4A-208ENST00000534106 KXD1Q9BQD3 176 aa3.39□□□□□ -1.87
CHMP4A-208ENST00000534106 MYL10Q9BUA6 226 aa3.39□□□□□ -1.87
CHMP4A-208ENST00000534106 DDX23Q9BUQ8 820 aaKnown RBP3.39□□□□□ -1.87
CHMP4A-208ENST00000534106 PLA2G2FQ9BZM2 168 aa3.39□□□□□ -1.87
CHMP4A-208ENST00000534106 ZBP1Q9H171 429 aa3.39□□□□□ -1.87
CHMP4A-208ENST00000534106 VPS11Q9H270 941 aa3.39□□□□□ -1.87
CHMP4A-208ENST00000534106 WDR6Q9NNW5 1121 aaKnown RBP3.39□□□□□ -1.87
CHMP4A-208ENST00000534106 TCP11L1Q9NUJ3 509 aa3.39□□□□□ -1.87
CHMP4A-208ENST00000534106 TMEM161AQ9NX61 479 aa3.39□□□□□ -1.87
CHMP4A-208ENST00000534106 EPS15L1Q9UBC2 864 aa3.39□□□□□ -1.87
CHMP4A-208ENST00000534106 DNAJB4Q9UDY4 337 aa3.39□□□□□ -1.87
CHMP4A-208ENST00000534106 ZNF215Q9UL58 517 aaPredicted RBP3.39□□□□□ -1.87
CHMP4A-208ENST00000534106 PCDHB10Q9UN67 800 aa3.39□□□□□ -1.87
CHMP4A-208ENST00000534106 WASF3Q9UPY6 502 aa3.39□□□□□ -1.87
CHMP4A-208ENST00000534106 PCDHA2Q9Y5H9 948 aa3.39□□□□□ -1.87
CHMP4A-208ENST00000534106 CFAP46Q8IYW2 2715 aa3.39□□□□□ -1.87
CHMP4A-208ENST00000534106 TTC3P53804 2025 aa3.39□□□□□ -1.87
CHMP4A-208ENST00000534106 NAV1Q8NEY1 1877 aa3.39□□□□□ -1.87
CHMP4A-208ENST00000534106 COL12A1Q99715 3063 aa3.38□□□□□ -1.87
CHMP4A-208ENST00000534106 PIEZO2Q9H5I5 2752 aa3.38□□□□□ -1.87
CHMP4A-208ENST00000534106 F8W810 466 aa3.38□□□□□ -1.87
CHMP4A-208ENST00000534106 CYR61O00622 381 aa3.38□□□□□ -1.87
CHMP4A-208ENST00000534106 INPPL1O15357 1258 aa3.38□□□□□ -1.87
CHMP4A-208ENST00000534106 TEX28O15482 410 aa3.38□□□□□ -1.87
CHMP4A-208ENST00000534106 FZD7O75084 574 aa3.38□□□□□ -1.87
CHMP4A-208ENST00000534106 ZC3H11AO75152 810 aaKnown RBP eCLIP3.38□□□□□ -1.87
CHMP4A-208ENST00000534106 RAB11FIP3O75154 756 aa3.38□□□□□ -1.87
CHMP4A-208ENST00000534106 GPR32O75388 356 aa3.38□□□□□ -1.87
CHMP4A-208ENST00000534106 DDHD2O94830 711 aa3.38□□□□□ -1.87
CHMP4A-208ENST00000534106 RECKO95980 971 aa3.38□□□□□ -1.87
CHMP4A-208ENST00000534106 VTNP04004 478 aa3.38□□□□□ -1.87
CHMP4A-208ENST00000534106 PRB1P04280 392 aa3.38□□□□□ -1.87
CHMP4A-208ENST00000534106 EPHX1P07099 455 aa3.38□□□□□ -1.87
CHMP4A-208ENST00000534106 GALTP07902 379 aa3.38□□□□□ -1.87
CHMP4A-208ENST00000534106 CTSAP10619 480 aa3.38□□□□□ -1.87
CHMP4A-208ENST00000534106 KCNA2P16389 499 aa3.38□□□□□ -1.87
CHMP4A-208ENST00000534106 ZNF76P36508 570 aa3.38□□□□□ -1.87
CHMP4A-208ENST00000534106 SLC11A1P49279 550 aa3.38□□□□□ -1.87
CHMP4A-208ENST00000534106 ALDH7A1P49419 539 aaKnown RBP3.38□□□□□ -1.87
CHMP4A-208ENST00000534106 SATB1Q01826 763 aa3.38□□□□□ -1.87
CHMP4A-208ENST00000534106 ADCY1Q08828 1119 aa3.38□□□□□ -1.87
CHMP4A-208ENST00000534106 SIM2Q14190 667 aaPredicted RBP3.38□□□□□ -1.87
CHMP4A-208ENST00000534106 MLF2Q15773 248 aaPredicted RBP3.38□□□□□ -1.87
CHMP4A-208ENST00000534106 STPG1Q5TH74 334 aa3.38□□□□□ -1.87
CHMP4A-208ENST00000534106 TCEAL6Q6IPX3 200 aa3.38□□□□□ -1.87
CHMP4A-208ENST00000534106 KIAA1211LQ6NV74 962 aa3.38□□□□□ -1.87
CHMP4A-208ENST00000534106 ARHGEF18Q6ZSZ5 1173 aa3.38□□□□□ -1.87
CHMP4A-208ENST00000534106 GET4Q7L5D6 327 aaPredicted RBP3.38□□□□□ -1.87
CHMP4A-208ENST00000534106 DDX53Q86TM3 631 aaKnown RBP3.38□□□□□ -1.87
CHMP4A-208ENST00000534106 ECHDC2Q86YB7 292 aa3.38□□□□□ -1.87
CHMP4A-208ENST00000534106 HOMER1Q86YM7 354 aa3.38□□□□□ -1.87
CHMP4A-208ENST00000534106 LURAP1LQ8IV03 231 aa3.38□□□□□ -1.87
CHMP4A-208ENST00000534106 TEX2Q8IWB9 1127 aa3.38□□□□□ -1.87
CHMP4A-208ENST00000534106 FTSJ3Q8IY81 847 aaKnown RBP3.38□□□□□ -1.87
CHMP4A-208ENST00000534106 CELF5Q8N6W0 485 aaKnown RBP3.38□□□□□ -1.87
CHMP4A-208ENST00000534106 RBBP8NLQ8NC74 664 aaPredicted RBP3.38□□□□□ -1.87
CHMP4A-208ENST00000534106 ITFG1Q8TB96 612 aa3.38□□□□□ -1.87
CHMP4A-208ENST00000534106 SEPT1Q8WYJ6 367 aa3.38□□□□□ -1.87
CHMP4A-208ENST00000534106 SEC14L1Q92503 715 aa3.38□□□□□ -1.87
CHMP4A-208ENST00000534106 SMG7Q92540 1137 aaKnown RBP3.38□□□□□ -1.87
CHMP4A-208ENST00000534106 TCEAL3Q969E4 200 aa3.38□□□□□ -1.87
CHMP4A-208ENST00000534106 TMEM169Q96HH4 297 aa3.38□□□□□ -1.87
CHMP4A-208ENST00000534106 IGSF21Q96ID5 467 aa3.38□□□□□ -1.87
CHMP4A-208ENST00000534106 INPP4AQ96PE3 977 aaPredicted RBP3.38□□□□□ -1.87
CHMP4A-208ENST00000534106 MENTQ9BUN1 341 aa3.38□□□□□ -1.87
CHMP4A-208ENST00000534106 LSM14BQ9BX40 385 aaKnown RBP3.38□□□□□ -1.87
CHMP4A-208ENST00000534106 AMNQ9BXJ7 453 aa3.38□□□□□ -1.87
CHMP4A-208ENST00000534106 KRTAP3-1Q9BYR8 98 aa3.38□□□□□ -1.87
CHMP4A-208ENST00000534106 KLHL25Q9H0H3 589 aa3.38□□□□□ -1.87
CHMP4A-208ENST00000534106 ARRDC1-AS1Q9H2J1 176 aa3.38□□□□□ -1.87
CHMP4A-208ENST00000534106 NRDE2Q9H7Z3 1164 aa3.38□□□□□ -1.87
CHMP4A-208ENST00000534106 SFXN1Q9H9B4 322 aa3.38□□□□□ -1.87
CHMP4A-208ENST00000534106 L2HGDHQ9H9P8 463 aa3.38□□□□□ -1.87
CHMP4A-208ENST00000534106 LTB4R2Q9NPC1 389 aa3.38□□□□□ -1.87
CHMP4A-208ENST00000534106 MAN1C1Q9NR34 630 aa3.38□□□□□ -1.87
CHMP4A-208ENST00000534106 SLC2A4RGQ9NR83 387 aa3.38□□□□□ -1.87
CHMP4A-208ENST00000534106 ECHDC1Q9NTX5 307 aa3.38□□□□□ -1.87
CHMP4A-208ENST00000534106 POLR3BQ9NW08 1133 aaPredicted RBP3.38□□□□□ -1.87
CHMP4A-208ENST00000534106 ERAP1Q9NZ08 941 aa3.38□□□□□ -1.87
CHMP4A-208ENST00000534106 CGGBP1Q9UFW8 167 aaPredicted RBP3.38□□□□□ -1.87
CHMP4A-208ENST00000534106 ANAPC4Q9UJX5 808 aa3.38□□□□□ -1.87
CHMP4A-208ENST00000534106 PNMA2Q9UL42 364 aa3.38□□□□□ -1.87
CHMP4A-208ENST00000534106 AKT3Q9Y243 479 aa3.38□□□□□ -1.87
CHMP4A-208ENST00000534106 HS3ST3A1Q9Y663 406 aa3.38□□□□□ -1.87
CHMP4A-208ENST00000534106 SQORQ9Y6N5 450 aa3.38□□□□□ -1.87
CHMP4A-208ENST00000534106 GREB1LQ9C091 1923 aaPredicted RBP3.38□□□□□ -1.87
CHMP4A-208ENST00000534106 CCDC171Q6TFL3 1326 aa3.38□□□□□ -1.87
CHMP4A-208ENST00000534106 USP9XQ93008 2570 aaPredicted RBP3.38□□□□□ -1.87
CHMP4A-208ENST00000534106 SMIM35A0A1B0GVV1 85 aa3.37□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms