RNA–Protein interactions for RNA: ENST00000533806.5

VPS28-216, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 650 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-216ENST00000533806 PGFP49763 221 aa13.73□□□□□ -0.21
VPS28-216ENST00000533806 STARD6P59095 220 aa13.73□□□□□ -0.21
VPS28-216ENST00000533806 ZXDBP98169 803 aa13.73□□□□□ -0.21
VPS28-216ENST00000533806 APBA1Q02410 837 aa13.73□□□□□ -0.21
VPS28-216ENST00000533806 TYRO3Q06418 890 aa13.73□□□□□ -0.21
VPS28-216ENST00000533806 GRM2Q14416 872 aa13.73□□□□□ -0.21
VPS28-216ENST00000533806 KCNJ12Q14500 433 aa13.73□□□□□ -0.21
VPS28-216ENST00000533806 NCAPHQ15003 741 aa13.73□□□□□ -0.21
VPS28-216ENST00000533806 VWA3BQ502W6 1294 aa13.73□□□□□ -0.21
VPS28-216ENST00000533806 PKDCCQ504Y2 493 aa13.73□□□□□ -0.21
VPS28-216ENST00000533806 HSP90AA4PQ58FG1 418 aa13.73□□□□□ -0.21
VPS28-216ENST00000533806 GBP6Q6ZN66 633 aa13.73□□□□□ -0.21
VPS28-216ENST00000533806 TTC30AQ86WT1 665 aa13.73□□□□□ -0.21
VPS28-216ENST00000533806 SIX5Q8N196 739 aa13.73□□□□□ -0.21
VPS28-216ENST00000533806 CELF5Q8N6W0 485 aaKnown RBP13.73□□□□□ -0.21
VPS28-216ENST00000533806 TFAP2BQ92481 460 aa13.73□□□□□ -0.21
VPS28-216ENST00000533806 DNASE1L2Q92874 299 aa13.73□□□□□ -0.21
VPS28-216ENST00000533806 CRACR2AQ9BSW2 395 aa13.73□□□□□ -0.21
VPS28-216ENST00000533806 DNAI2Q9GZS0 605 aa13.73□□□□□ -0.21
VPS28-216ENST00000533806 RNF38Q9H0F5 515 aa13.73□□□□□ -0.21
VPS28-216ENST00000533806 HSD3B7Q9H2F3 369 aa13.73□□□□□ -0.21
VPS28-216ENST00000533806 SIX2Q9NPC8 291 aa13.73□□□□□ -0.21
VPS28-216ENST00000533806 FANCLQ9NW38 375 aa13.73□□□□□ -0.21
VPS28-216ENST00000533806 TRPM5Q9NZQ8 1165 aa13.73□□□□□ -0.21
VPS28-216ENST00000533806 USP3Q9Y6I4 520 aa13.73□□□□□ -0.21
VPS28-216ENST00000533806 GREB1Q4ZG55 1949 aa13.72□□□□□ -0.21
VPS28-216ENST00000533806 LRRC10BA6NIK2 292 aa13.72□□□□□ -0.21
VPS28-216ENST00000533806 VDRP11473 427 aa13.72□□□□□ -0.21
VPS28-216ENST00000533806 ZNF18P17022 549 aa13.72□□□□□ -0.21
VPS28-216ENST00000533806 AVPR1AP37288 418 aa13.72□□□□□ -0.21
VPS28-216ENST00000533806 KIF11P52732 1056 aa13.72□□□□□ -0.21
VPS28-216ENST00000533806 PFKPQ01813 784 aa13.72□□□□□ -0.21
VPS28-216ENST00000533806 EXOC3L4Q17RC7 722 aa13.72□□□□□ -0.21
VPS28-216ENST00000533806 SLC44A4Q53GD3 710 aa13.72□□□□□ -0.21
VPS28-216ENST00000533806 RAB41Q5JT25 222 aa13.72□□□□□ -0.21
VPS28-216ENST00000533806 CWF19L1Q69YN2 538 aaKnown RBP13.72□□□□□ -0.21
VPS28-216ENST00000533806 CAVIN1Q6NZI2 390 aaKnown RBP13.72□□□□□ -0.21
VPS28-216ENST00000533806 GJB7Q6PEY0 223 aa13.72□□□□□ -0.21
VPS28-216ENST00000533806 TMEM270Q6UE05 265 aa13.72□□□□□ -0.21
VPS28-216ENST00000533806 CREBRFQ8IUR6 639 aa13.72□□□□□ -0.21
VPS28-216ENST00000533806 ARL14EPQ8N8R7 260 aaPredicted RBP13.72□□□□□ -0.21
VPS28-216ENST00000533806 SLITRK1Q96PX8 696 aa13.72□□□□□ -0.21
VPS28-216ENST00000533806 FUCA2Q9BTY2 467 aa13.72□□□□□ -0.21
VPS28-216ENST00000533806 UBE2TQ9NPD8 197 aaPredicted RBP13.72□□□□□ -0.21
VPS28-216ENST00000533806 ARHGEF3Q9NR81 526 aa13.72□□□□□ -0.21
VPS28-216ENST00000533806 APEX2Q9UBZ4 518 aa13.72□□□□□ -0.21
VPS28-216ENST00000533806 CHORDC1Q9UHD1 332 aaPredicted RBP13.72□□□□□ -0.21
VPS28-216ENST00000533806 FBXL21Q9UKT6 434 aa13.72□□□□□ -0.21
VPS28-216ENST00000533806 SCML2Q9UQR0 700 aa13.72□□□□□ -0.21
VPS28-216ENST00000533806 TRAV19A0A0A6YYK7 116 aa13.71□□□□□ -0.21
VPS28-216ENST00000533806 CHADO15335 359 aa13.71□□□□□ -0.21
VPS28-216ENST00000533806 USP17L7P0C7H9 530 aa13.71□□□□□ -0.21
VPS28-216ENST00000533806 PRKCSHP14314 528 aaPredicted RBP13.71□□□□□ -0.21
VPS28-216ENST00000533806 HDCP19113 662 aa13.71□□□□□ -0.21
VPS28-216ENST00000533806 GDI1P31150 447 aa13.71□□□□□ -0.21
VPS28-216ENST00000533806 CLCN5P51795 746 aa13.71□□□□□ -0.21
VPS28-216ENST00000533806 MLLT6P55198 1093 aaPredicted RBP13.71□□□□□ -0.21
VPS28-216ENST00000533806 SLC7A9P82251 487 aa13.71□□□□□ -0.21
VPS28-216ENST00000533806 MYL5Q02045 173 aa13.71□□□□□ -0.21
VPS28-216ENST00000533806 KCNMA1Q12791 1236 aa13.71□□□□□ -0.21
VPS28-216ENST00000533806 CNGA2Q16280 664 aa13.71□□□□□ -0.21
VPS28-216ENST00000533806 SGO2Q562F6 1265 aa13.71□□□□□ -0.21
VPS28-216ENST00000533806 LCLAT1Q6UWP7 414 aa13.71□□□□□ -0.21
VPS28-216ENST00000533806 ENOSF1Q7L5Y1 443 aa13.71□□□□□ -0.21
VPS28-216ENST00000533806 ZNF687Q8N1G0 1237 aa13.71□□□□□ -0.21
VPS28-216ENST00000533806 RBBP8NLQ8NC74 664 aaPredicted RBP13.71□□□□□ -0.21
VPS28-216ENST00000533806 PDZD8Q8NEN9 1154 aa13.71□□□□□ -0.21
VPS28-216ENST00000533806 BPIFB1Q8TDL5 484 aa13.71□□□□□ -0.21
VPS28-216ENST00000533806 IRF7Q92985 503 aa13.71□□□□□ -0.21
VPS28-216ENST00000533806 FAM83CQ9BQN1 747 aa13.71□□□□□ -0.21
VPS28-216ENST00000533806 FBXO44Q9H4M3 255 aa13.71□□□□□ -0.21
VPS28-216ENST00000533806 KIF9Q9HAQ2 790 aa13.71□□□□□ -0.21
VPS28-216ENST00000533806 TSPAN16Q9UKR8 245 aa13.71□□□□□ -0.21
VPS28-216ENST00000533806 CA14Q9ULX7 337 aa13.71□□□□□ -0.21
VPS28-216ENST00000533806 ARHGAP26Q9UNA1 814 aa13.71□□□□□ -0.21
VPS28-216ENST00000533806 PCDHB4Q9Y5E5 795 aa13.71□□□□□ -0.21
VPS28-216ENST00000533806 BECN2A8MW95 431 aa13.7□□□□□ -0.22
VPS28-216ENST00000533806 DPYSL4O14531 572 aa13.7□□□□□ -0.22
VPS28-216ENST00000533806 ZNF263O14978 683 aa13.7□□□□□ -0.22
VPS28-216ENST00000533806 PI15O43692 258 aa13.7□□□□□ -0.22
VPS28-216ENST00000533806 GABBR2O75899 941 aa13.7□□□□□ -0.22
VPS28-216ENST00000533806 AVPR2P30518 371 aa13.7□□□□□ -0.22
VPS28-216ENST00000533806 TUBP50607 506 aa13.7□□□□□ -0.22
VPS28-216ENST00000533806 VCPP55072 806 aaKnown RBP13.7□□□□□ -0.22
VPS28-216ENST00000533806 MFAP3P55082 362 aa13.7□□□□□ -0.22
VPS28-216ENST00000533806 PRKCQQ04759 706 aa13.7□□□□□ -0.22
VPS28-216ENST00000533806 USP4Q13107 963 aa13.7□□□□□ -0.22
VPS28-216ENST00000533806 KRT31Q15323 416 aa13.7□□□□□ -0.22
VPS28-216ENST00000533806 ZNF77Q15935 545 aa13.7□□□□□ -0.22
VPS28-216ENST00000533806 GOLGA7BQ2TAP0 167 aa13.7□□□□□ -0.22
VPS28-216ENST00000533806 ARHGAP29Q52LW3 1261 aa13.7□□□□□ -0.22
VPS28-216ENST00000533806 ASTLQ6HA08 431 aaPredicted RBP13.7□□□□□ -0.22
VPS28-216ENST00000533806 APTXQ7Z2E3 356 aaKnown RBP13.7□□□□□ -0.22
VPS28-216ENST00000533806 CCDC186Q7Z3E2 898 aa13.7□□□□□ -0.22
VPS28-216ENST00000533806 PIGZQ86VD9 579 aa13.7□□□□□ -0.22
VPS28-216ENST00000533806 ZNF276Q8N554 614 aa13.7□□□□□ -0.22
VPS28-216ENST00000533806 KIAA1958Q8N8K9 716 aa13.7□□□□□ -0.22
VPS28-216ENST00000533806 SHC3Q92529 594 aa13.7□□□□□ -0.22
VPS28-216ENST00000533806 FBXO32Q969P5 355 aa13.7□□□□□ -0.22
VPS28-216ENST00000533806 ZFRQ96KR1 1074 aaKnown RBP13.7□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms