RNA–Protein interactions for RNA: ENST00000528086.5

CD44-227, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 580 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-227ENST00000528086 NDRG2Q9UN36 371 aaKnown RBP11.32□□□□□ -0.6
CD44-227ENST00000528086 EP300Q09472 2414 aaPredicted RBP11.32□□□□□ -0.6
CD44-227ENST00000528086 GVINP1Q7Z2Y8 2422 aa11.32□□□□□ -0.6
CD44-227ENST00000528086 PTPRZ1P23471 2315 aaPredicted RBP11.32□□□□□ -0.6
CD44-227ENST00000528086 EML5Q05BV3 1969 aa11.32□□□□□ -0.6
CD44-227ENST00000528086 DMXL1Q9Y485 3027 aa11.31□□□□□ -0.6
CD44-227ENST00000528086 TRIM66O15016 1216 aa11.31□□□□□ -0.6
CD44-227ENST00000528086 GREM1O60565 184 aa11.31□□□□□ -0.6
CD44-227ENST00000528086 KINO60870 393 aaKnown RBP11.31□□□□□ -0.6
CD44-227ENST00000528086 GABBR2O75899 941 aa11.31□□□□□ -0.6
CD44-227ENST00000528086 SP9P0CG40 484 aa11.31□□□□□ -0.6
CD44-227ENST00000528086 EPB41P11171 864 aaKnown RBP11.31□□□□□ -0.6
CD44-227ENST00000528086 KRT13P13646 458 aa11.31□□□□□ -0.6
CD44-227ENST00000528086 TCF3P15923 654 aa11.31□□□□□ -0.6
CD44-227ENST00000528086 CD58P19256 250 aa11.31□□□□□ -0.6
CD44-227ENST00000528086 RPS9P46781 194 aaKnown RBP11.31□□□□□ -0.6
CD44-227ENST00000528086 MXI1P50539 228 aa11.31□□□□□ -0.6
CD44-227ENST00000528086 SLC5A3P53794 718 aa11.31□□□□□ -0.6
CD44-227ENST00000528086 STX17P56962 302 aa11.31□□□□□ -0.6
CD44-227ENST00000528086 UBE2HP62256 183 aa11.31□□□□□ -0.6
CD44-227ENST00000528086 LRRC63Q05C16 580 aa11.31□□□□□ -0.6
CD44-227ENST00000528086 MESP2Q0VG99 397 aa11.31□□□□□ -0.6
CD44-227ENST00000528086 MTAPQ13126 283 aa11.31□□□□□ -0.6
CD44-227ENST00000528086 CCINQ13939 588 aa11.31□□□□□ -0.6
CD44-227ENST00000528086 TAF12Q16514 161 aa11.31□□□□□ -0.6
CD44-227ENST00000528086 CAMK4Q16566 473 aa11.31□□□□□ -0.6
CD44-227ENST00000528086 EML3Q32P44 896 aa11.31□□□□□ -0.6
CD44-227ENST00000528086 ARHGAP29Q52LW3 1261 aa11.31□□□□□ -0.6
CD44-227ENST00000528086 KLHL10Q6JEL2 608 aa11.31□□□□□ -0.6
CD44-227ENST00000528086 FOXR2Q6PJQ5 311 aa11.31□□□□□ -0.6
CD44-227ENST00000528086 TSSK4Q6SA08 328 aa11.31□□□□□ -0.6
CD44-227ENST00000528086 CLEC17AQ6ZS10 378 aa11.31□□□□□ -0.6
CD44-227ENST00000528086 Q6ZS52 159 aa11.31□□□□□ -0.6
CD44-227ENST00000528086 CLEC20AQ6ZU45 233 aa11.31□□□□□ -0.6
CD44-227ENST00000528086 IRF2BP1Q8IU81 584 aa11.31□□□□□ -0.6
CD44-227ENST00000528086 NUP93Q8N1F7 819 aa11.31□□□□□ -0.6
CD44-227ENST00000528086 SLC4A11Q8NBS3 891 aa11.31□□□□□ -0.6
CD44-227ENST00000528086 FBXL13Q8NEE6 735 aa11.31□□□□□ -0.6
CD44-227ENST00000528086 SH3RF2Q8TEC5 729 aa11.31□□□□□ -0.6
CD44-227ENST00000528086 NELFBQ8WX92 580 aa11.31□□□□□ -0.6
CD44-227ENST00000528086 FAM3CQ92520 227 aa11.31□□□□□ -0.6
CD44-227ENST00000528086 KAT5Q92993 513 aa11.31□□□□□ -0.6
CD44-227ENST00000528086 P2RY11Q96G91 374 aa11.31□□□□□ -0.6
CD44-227ENST00000528086 ZSWIM1Q9BR11 485 aa11.31□□□□□ -0.6
CD44-227ENST00000528086 CHRDQ9H2X0 955 aa11.31□□□□□ -0.6
CD44-227ENST00000528086 TRPC7Q9HCX4 862 aa11.31□□□□□ -0.6
CD44-227ENST00000528086 POLR3BQ9NW08 1133 aaPredicted RBP11.31□□□□□ -0.6
CD44-227ENST00000528086 RAB20Q9NX57 234 aa11.31□□□□□ -0.6
CD44-227ENST00000528086 UXTQ9UBK9 157 aaPredicted RBP11.31□□□□□ -0.6
CD44-227ENST00000528086 CHORDC1Q9UHD1 332 aaPredicted RBP11.31□□□□□ -0.6
CD44-227ENST00000528086 ARHGAP26Q9UNA1 814 aa11.31□□□□□ -0.6
CD44-227ENST00000528086 WNT6Q9Y6F9 365 aa11.31□□□□□ -0.6
CD44-227ENST00000528086 R4GN57 208 aa11.31□□□□□ -0.6
CD44-227ENST00000528086 MYO18AQ92614 2054 aaKnown RBP11.31□□□□□ -0.6
CD44-227ENST00000528086 RNF225M0QZC1 329 aaPredicted RBP11.3□□□□□ -0.6
CD44-227ENST00000528086 TULP2O00295 520 aa11.3□□□□□ -0.6
CD44-227ENST00000528086 SCAMP3O14828 347 aaKnown RBP11.3□□□□□ -0.6
CD44-227ENST00000528086 AP1G2O75843 785 aa11.3□□□□□ -0.6
CD44-227ENST00000528086 CALCAP01258 141 aa11.3□□□□□ -0.6
CD44-227ENST00000528086 HDCP19113 662 aa11.3□□□□□ -0.6
CD44-227ENST00000528086 ACO1P21399 889 aaKnown RBP11.3□□□□□ -0.6
CD44-227ENST00000528086 ADORA2BP29275 332 aa11.3□□□□□ -0.6
CD44-227ENST00000528086 AVPR1AP37288 418 aa11.3□□□□□ -0.6
CD44-227ENST00000528086 MAP3K7CLP57077 242 aa11.3□□□□□ -0.6
CD44-227ENST00000528086 SLC7A9P82251 487 aa11.3□□□□□ -0.6
CD44-227ENST00000528086 RUNX3Q13761 415 aa11.3□□□□□ -0.6
CD44-227ENST00000528086 MTF1Q14872 753 aa11.3□□□□□ -0.6
CD44-227ENST00000528086 ZNF394Q53GI3 561 aa11.3□□□□□ -0.6
CD44-227ENST00000528086 PPP1R26Q5T8A7 1209 aaPredicted RBP11.3□□□□□ -0.6
CD44-227ENST00000528086 SNX30Q5VWJ9 437 aa11.3□□□□□ -0.6
CD44-227ENST00000528086 FSTL4Q6MZW2 842 aa11.3□□□□□ -0.6
CD44-227ENST00000528086 MAMSTRQ6ZN01 415 aa11.3□□□□□ -0.6
CD44-227ENST00000528086 FILIP1Q7Z7B0 1213 aa11.3□□□□□ -0.6
CD44-227ENST00000528086 TRIM59Q8IWR1 403 aa11.3□□□□□ -0.6
CD44-227ENST00000528086 SMARCD1Q96GM5 515 aa11.3□□□□□ -0.6
CD44-227ENST00000528086 TNIP3Q96KP6 325 aa11.3□□□□□ -0.6
CD44-227ENST00000528086 GCNAQ96QF7 691 aa11.3□□□□□ -0.6
CD44-227ENST00000528086 CCSER2Q9H7U1 834 aa11.3□□□□□ -0.6
CD44-227ENST00000528086 LMAN1LQ9HAT1 526 aa11.3□□□□□ -0.6
CD44-227ENST00000528086 NMUR1Q9HB89 426 aa11.3□□□□□ -0.6
CD44-227ENST00000528086 DMAP1Q9NPF5 467 aaPredicted RBP11.3□□□□□ -0.6
CD44-227ENST00000528086 PRMT8Q9NR22 394 aaPredicted RBP11.3□□□□□ -0.6
CD44-227ENST00000528086 CISHQ9NSE2 258 aa11.3□□□□□ -0.6
CD44-227ENST00000528086 LMBRD1Q9NUN5 540 aa11.3□□□□□ -0.6
CD44-227ENST00000528086 GMIPQ9P107 970 aa11.3□□□□□ -0.6
CD44-227ENST00000528086 KIAA1468Q9P260 1216 aa11.3□□□□□ -0.6
CD44-227ENST00000528086 ZMYM5Q9UJ78 669 aa11.3□□□□□ -0.6
CD44-227ENST00000528086 CTNND2Q9UQB3 1225 aa11.3□□□□□ -0.6
CD44-227ENST00000528086 TRAV19A0A0A6YYK7 116 aa11.29□□□□□ -0.6
CD44-227ENST00000528086 PRR23AA6NEV1 266 aa11.29□□□□□ -0.6
CD44-227ENST00000528086 LEFTY2O00292 366 aa11.29□□□□□ -0.6
CD44-227ENST00000528086 MAN2B1O00754 1011 aa11.29□□□□□ -0.6
CD44-227ENST00000528086 DPYSL4O14531 572 aa11.29□□□□□ -0.6
CD44-227ENST00000528086 PMM2O15305 246 aa11.29□□□□□ -0.6
CD44-227ENST00000528086 COCHO43405 550 aa11.29□□□□□ -0.6
CD44-227ENST00000528086 TBX18O95935 607 aa11.29□□□□□ -0.6
CD44-227ENST00000528086 CKMP06732 381 aa11.29□□□□□ -0.6
CD44-227ENST00000528086 USP17L7P0C7H9 530 aa11.29□□□□□ -0.6
CD44-227ENST00000528086 YWHAQP27348 245 aa11.29□□□□□ -0.6
CD44-227ENST00000528086 FMO5P49326 533 aa11.29□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 18 ms