RNA–Protein interactions for RNA: ENST00000526054.5

VPS28-204, Transcript of VPS28, ESCRT-I subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS28, Length 892 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-204ENST00000526054 NIF3L1Q9GZT8 377 aa10.79□□□□□ -0.68
VPS28-204ENST00000526054 SMG9Q9H0W8 520 aaKnown RBP10.79□□□□□ -0.68
VPS28-204ENST00000526054 SNX25Q9H3E2 840 aa10.79□□□□□ -0.68
VPS28-204ENST00000526054 IL21Q9HBE4 155 aa10.79□□□□□ -0.68
VPS28-204ENST00000526054 THG1LQ9NWX6 298 aaKnown RBP10.79□□□□□ -0.68
VPS28-204ENST00000526054 RAB20Q9NX57 234 aa10.79□□□□□ -0.68
VPS28-204ENST00000526054 COQ4Q9Y3A0 265 aa10.79□□□□□ -0.68
VPS28-204ENST00000526054 CHURC1-FNTBB4DL54 471 aa10.78□□□□□ -0.68
VPS28-204ENST00000526054 KCNJ18B7U540 433 aa10.78□□□□□ -0.68
VPS28-204ENST00000526054 GABRDO14764 452 aa10.78□□□□□ -0.68
VPS28-204ENST00000526054 PAPSS2O95340 614 aaPredicted RBP10.78□□□□□ -0.68
VPS28-204ENST00000526054 TPM2P07951 284 aa10.78□□□□□ -0.68
VPS28-204ENST00000526054 HAPLN1P10915 354 aaPredicted RBP10.78□□□□□ -0.68
VPS28-204ENST00000526054 PRKCSHP14314 528 aaPredicted RBP10.78□□□□□ -0.68
VPS28-204ENST00000526054 TRIM21P19474 475 aaKnown RBP10.78□□□□□ -0.68
VPS28-204ENST00000526054 WEE1P30291 646 aa10.78□□□□□ -0.68
VPS28-204ENST00000526054 AVPR1AP37288 418 aa10.78□□□□□ -0.68
VPS28-204ENST00000526054 FNTBP49356 437 aa10.78□□□□□ -0.68
VPS28-204ENST00000526054 TNK2Q07912 1038 aa10.78□□□□□ -0.68
VPS28-204ENST00000526054 DMWDQ09019 674 aa10.78□□□□□ -0.68
VPS28-204ENST00000526054 SPEM2Q0P670 501 aa10.78□□□□□ -0.68
VPS28-204ENST00000526054 KCNH2Q12809 1159 aa10.78□□□□□ -0.68
VPS28-204ENST00000526054 SIM2Q14190 667 aaPredicted RBP10.78□□□□□ -0.68
VPS28-204ENST00000526054 KCNJ12Q14500 433 aa10.78□□□□□ -0.68
VPS28-204ENST00000526054 PON2Q15165 354 aa10.78□□□□□ -0.68
VPS28-204ENST00000526054 MAN2A1Q16706 1144 aa10.78□□□□□ -0.68
VPS28-204ENST00000526054 ITPRIPL2Q3MIP1 535 aa10.78□□□□□ -0.68
VPS28-204ENST00000526054 INTS6LQ5JSJ4 861 aaKnown RBP10.78□□□□□ -0.68
VPS28-204ENST00000526054 SPOPLQ6IQ16 392 aa10.78□□□□□ -0.68
VPS28-204ENST00000526054 ARHGAP30Q7Z6I6 1101 aaPredicted RBP10.78□□□□□ -0.68
VPS28-204ENST00000526054 OSTM1Q86WC4 334 aa10.78□□□□□ -0.68
VPS28-204ENST00000526054 IRF2BP1Q8IU81 584 aa10.78□□□□□ -0.68
VPS28-204ENST00000526054 ANKRD20A12PQ8NF67 263 aa10.78□□□□□ -0.68
VPS28-204ENST00000526054 OR6B3Q8NGW1 331 aa10.78□□□□□ -0.68
VPS28-204ENST00000526054 KBTBD7Q8WVZ9 684 aa10.78□□□□□ -0.68
VPS28-204ENST00000526054 FAXDC2Q96IV6 333 aa10.78□□□□□ -0.68
VPS28-204ENST00000526054 BPIFA3Q9BQP9 254 aa10.78□□□□□ -0.68
VPS28-204ENST00000526054 ACBD6Q9BR61 282 aa10.78□□□□□ -0.68
VPS28-204ENST00000526054 MRPL45Q9BRJ2 306 aaKnown RBP10.78□□□□□ -0.68
VPS28-204ENST00000526054 PI4K2AQ9BTU6 479 aa10.78□□□□□ -0.68
VPS28-204ENST00000526054 DNAI2Q9GZS0 605 aa10.78□□□□□ -0.68
VPS28-204ENST00000526054 SMYD3Q9H7B4 428 aa10.78□□□□□ -0.68
VPS28-204ENST00000526054 PARD6AQ9NPB6 346 aa10.78□□□□□ -0.68
VPS28-204ENST00000526054 ZMYM5Q9UJ78 669 aa10.78□□□□□ -0.68
VPS28-204ENST00000526054 CDH9Q9ULB4 789 aa10.78□□□□□ -0.68
VPS28-204ENST00000526054 PCDHB5Q9Y5E4 795 aa10.78□□□□□ -0.68
VPS28-204ENST00000526054 RALGAPA1Q6GYQ0 2036 aa10.77□□□□□ -0.68
VPS28-204ENST00000526054 SMTNL1A8MU46 457 aa10.77□□□□□ -0.69
VPS28-204ENST00000526054 K7ESF4 209 aa10.77□□□□□ -0.69
VPS28-204ENST00000526054 CAVIN2O95810 425 aa10.77□□□□□ -0.69
VPS28-204ENST00000526054 RETP07949 1114 aa10.77□□□□□ -0.69
VPS28-204ENST00000526054 TGM1P22735 817 aa10.77□□□□□ -0.69
VPS28-204ENST00000526054 ACAT1P24752 427 aaKnown RBP10.77□□□□□ -0.69
VPS28-204ENST00000526054 CNR2P34972 360 aa10.77□□□□□ -0.69
VPS28-204ENST00000526054 GNL1P36915 607 aaPredicted RBP10.77□□□□□ -0.69
VPS28-204ENST00000526054 ASPAP45381 313 aa10.77□□□□□ -0.69
VPS28-204ENST00000526054 ATXN1P54253 815 aaKnown RBP10.77□□□□□ -0.69
VPS28-204ENST00000526054 SRSF5Q13243 272 aaKnown RBP10.77□□□□□ -0.69
VPS28-204ENST00000526054 CCINQ13939 588 aa10.77□□□□□ -0.69
VPS28-204ENST00000526054 MAPRE1Q15691 268 aaKnown RBP10.77□□□□□ -0.69
VPS28-204ENST00000526054 NFE2Q16621 373 aaPredicted RBP10.77□□□□□ -0.69
VPS28-204ENST00000526054 ZSCAN23Q3MJ62 389 aa10.77□□□□□ -0.69
VPS28-204ENST00000526054 HSP90AA4PQ58FG1 418 aa10.77□□□□□ -0.69
VPS28-204ENST00000526054 HEATR6Q6AI08 1181 aaKnown RBP10.77□□□□□ -0.69
VPS28-204ENST00000526054 LRRTM3Q86VH5 581 aa10.77□□□□□ -0.69
VPS28-204ENST00000526054 LONP2Q86WA8 852 aa10.77□□□□□ -0.69
VPS28-204ENST00000526054 CMTM8Q8IZV2 173 aa10.77□□□□□ -0.69
VPS28-204ENST00000526054 TTC39CQ8N584 583 aa10.77□□□□□ -0.69
VPS28-204ENST00000526054 STKLD1Q8NE28 680 aa10.77□□□□□ -0.69
VPS28-204ENST00000526054 SEMA4DQ92854 862 aa10.77□□□□□ -0.69
VPS28-204ENST00000526054 NT5C1BQ96P26 610 aa10.77□□□□□ -0.69
VPS28-204ENST00000526054 SYT15Q9BQS2 421 aa10.77□□□□□ -0.69
VPS28-204ENST00000526054 RTKNQ9BST9 563 aa10.77□□□□□ -0.69
VPS28-204ENST00000526054 ANP32EQ9BTT0 268 aa10.77□□□□□ -0.69
VPS28-204ENST00000526054 FUCA2Q9BTY2 467 aa10.77□□□□□ -0.69
VPS28-204ENST00000526054 SLC46A2Q9BY10 475 aa10.77□□□□□ -0.69
VPS28-204ENST00000526054 KIF9Q9HAQ2 790 aa10.77□□□□□ -0.69
VPS28-204ENST00000526054 CYP3A43Q9HB55 503 aa10.77□□□□□ -0.69
VPS28-204ENST00000526054 APOBEC3GQ9HC16 384 aaKnown RBP10.77□□□□□ -0.69
VPS28-204ENST00000526054 UTP3Q9NQZ2 479 aaKnown RBP eCLIP10.77□□□□□ -0.691e-6■■■■■ 37.9
VPS28-204ENST00000526054 SAMSN1Q9NSI8 373 aaKnown RBP10.77□□□□□ -0.69
VPS28-204ENST00000526054 MAGED2Q9UNF1 606 aaPredicted RBP10.77□□□□□ -0.69
VPS28-204ENST00000526054 PTPRDP23468 1912 aa10.77□□□□□ -0.69
VPS28-204ENST00000526054 HELZP42694 1942 aaKnown RBP10.76□□□□□ -0.69
VPS28-204ENST00000526054 MYH10P35580 1976 aa10.76□□□□□ -0.69
VPS28-204ENST00000526054 GTPBP10A4D1E9 387 aaKnown RBP10.76□□□□□ -0.69
VPS28-204ENST00000526054 BECN2A8MW95 431 aa10.76□□□□□ -0.69
VPS28-204ENST00000526054 A8MXQ7 604 aa10.76□□□□□ -0.69
VPS28-204ENST00000526054 LRP3O75074 770 aa10.76□□□□□ -0.69
VPS28-204ENST00000526054 CSH1P0DML2 217 aa10.76□□□□□ -0.69
VPS28-204ENST00000526054 CSH2P0DML3 217 aa10.76□□□□□ -0.69
VPS28-204ENST00000526054 TBXAS1P24557 533 aaPredicted RBP10.76□□□□□ -0.69
VPS28-204ENST00000526054 DDX6P26196 483 aaKnown RBP eCLIP10.76□□□□□ -0.69
VPS28-204ENST00000526054 RAP1GAPP47736 663 aa10.76□□□□□ -0.69
VPS28-204ENST00000526054 GPR15P49685 360 aa10.76□□□□□ -0.69
VPS28-204ENST00000526054 ZNF165P49910 485 aa10.76□□□□□ -0.69
VPS28-204ENST00000526054 YWHAEP62258 255 aaKnown RBP10.76□□□□□ -0.69
VPS28-204ENST00000526054 TCP11X2Q5H9J9 407 aa10.76□□□□□ -0.69
VPS28-204ENST00000526054 CDKAL1Q5VV42 579 aa10.76□□□□□ -0.69
VPS28-204ENST00000526054 C4orf50Q6ZRC1 276 aa10.76□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms