RNA–Protein interactions for RNA: ENST00000526025.1

CD44-222, Transcript of CD44 molecule (Indian blood group), human

TSL 2 BASIC

Gene CD44, Length 1,052 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-222	ENST00000526025	RPL34	P49207	117 aa	Known RBP	21.91	■■□□□ 1.1
CD44-222	ENST00000526025	KCNQ1	P51787	676 aa		21.91	■■□□□ 1.1
CD44-222	ENST00000526025	NTHL1	P78549	312 aa		21.91	■■□□□ 1.1
CD44-222	ENST00000526025	MTMR3	Q13615	1198 aa		21.91	■■□□□ 1.1
CD44-222	ENST00000526025	PTPN21	Q16825	1174 aa		21.91	■■□□□ 1.1
CD44-222	ENST00000526025	SLC5A9	Q2M3M2	681 aa		21.91	■■□□□ 1.1
CD44-222	ENST00000526025	GAREM2	Q75VX8	874 aa		21.91	■■□□□ 1.1
CD44-222	ENST00000526025	OTOP3	Q7RTS5	596 aa		21.91	■■□□□ 1.1
CD44-222	ENST00000526025	PIGZ	Q86VD9	579 aa		21.91	■■□□□ 1.1
CD44-222	ENST00000526025	DDX1	Q92499	740 aa	Known RBP	21.91	■■□□□ 1.1
CD44-222	ENST00000526025	HSFY1	Q96LI6	401 aa		21.91	■■□□□ 1.1
CD44-222	ENST00000526025	GCNA	Q96QF7	691 aa		21.91	■■□□□ 1.1
CD44-222	ENST00000526025	CYLD	Q9NQC7	956 aa		21.91	■■□□□ 1.1
CD44-222	ENST00000526025	CAPN11	Q9UMQ6	739 aa		21.91	■■□□□ 1.1
CD44-222	ENST00000526025	NR2E1	Q9Y466	385 aa		21.91	■■□□□ 1.1
CD44-222	ENST00000526025	AP5Z1	O43299	807 aa		21.9	■■□□□ 1.1
CD44-222	ENST00000526025	CALCA	P01258	141 aa		21.9	■■□□□ 1.1
CD44-222	ENST00000526025	F11	P03951	625 aa		21.9	■■□□□ 1.1
CD44-222	ENST00000526025	MYL4	P12829	197 aa		21.9	■■□□□ 1.1
CD44-222	ENST00000526025	DDX6	P26196	483 aa	Known RBP eCLIP	21.9	■■□□□ 1.1
CD44-222	ENST00000526025	YWHAQ	P27348	245 aa		21.9	■■□□□ 1.1
CD44-222	ENST00000526025	GABRR2	P28476	465 aa		21.9	■■□□□ 1.1
CD44-222	ENST00000526025	CCR2	P41597	374 aa		21.9	■■□□□ 1.1
CD44-222	ENST00000526025	GPD2	P43304	727 aa		21.9	■■□□□ 1.1
CD44-222	ENST00000526025	KIF11	P52732	1056 aa		21.9	■■□□□ 1.1
CD44-222	ENST00000526025	ZBED6	P86452	979 aa		21.9	■■□□□ 1.1
CD44-222	ENST00000526025	SCML4	Q8N228	414 aa		21.9	■■□□□ 1.1
CD44-222	ENST00000526025	PDZD8	Q8NEN9	1154 aa		21.9	■■□□□ 1.1
CD44-222	ENST00000526025	ZNF397	Q8NF99	534 aa	Predicted RBP	21.9	■■□□□ 1.1
CD44-222	ENST00000526025	SHKBP1	Q8TBC3	707 aa		21.9	■■□□□ 1.1
CD44-222	ENST00000526025	SYN2	Q92777	582 aa	Predicted RBP	21.9	■■□□□ 1.1
CD44-222	ENST00000526025	SECISBP2L	Q93073	1101 aa	Known RBP	21.9	■■□□□ 1.1
CD44-222	ENST00000526025	MRFAP1L1	Q96HT8	127 aa		21.9	■■□□□ 1.1
CD44-222	ENST00000526025	SLITRK1	Q96PX8	696 aa		21.9	■■□□□ 1.1
CD44-222	ENST00000526025	GDE1	Q9NZC3	331 aa		21.9	■■□□□ 1.1
CD44-222	ENST00000526025	AIPL1	Q9NZN9	384 aa		21.9	■■□□□ 1.1
CD44-222	ENST00000526025	NOCT	Q9UK39	431 aa	Known RBP	21.9	■■□□□ 1.1
CD44-222	ENST00000526025	MAGED2	Q9UNF1	606 aa	Predicted RBP	21.9	■■□□□ 1.1
CD44-222	ENST00000526025	USP3	Q9Y6I4	520 aa		21.9	■■□□□ 1.1
CD44-222	ENST00000526025	TCF20	Q9UGU0	1960 aa	Known RBP	21.9	■■□□□ 1.1
CD44-222	ENST00000526025	MOSPD3	O75425	235 aa		21.89	■■□□□ 1.09
CD44-222	ENST00000526025	PFKL	P17858	780 aa		21.89	■■□□□ 1.09
CD44-222	ENST00000526025	CDH5	P33151	784 aa	Predicted RBP	21.89	■■□□□ 1.09
CD44-222	ENST00000526025	KRT9	P35527	623 aa		21.89	■■□□□ 1.09
CD44-222	ENST00000526025	USP46	P62068	366 aa		21.89	■■□□□ 1.09
CD44-222	ENST00000526025	PLCB2	Q00722	1185 aa		21.89	■■□□□ 1.09
CD44-222	ENST00000526025	TMEM150A	Q86TG1	271 aa		21.89	■■□□□ 1.09
CD44-222	ENST00000526025	NOP9	Q86U38	636 aa	Known RBP	21.89	■■□□□ 1.09
CD44-222	ENST00000526025	ADHFE1	Q8IWW8	467 aa		21.89	■■□□□ 1.09
CD44-222	ENST00000526025	ITFG1	Q8TB96	612 aa		21.89	■■□□□ 1.09
CD44-222	ENST00000526025	UBA3	Q8TBC4	463 aa		21.89	■■□□□ 1.09
CD44-222	ENST00000526025	ACSF2	Q96CM8	615 aa	Predicted RBP	21.89	■■□□□ 1.09
CD44-222	ENST00000526025	EPS15L1	Q9UBC2	864 aa		21.89	■■□□□ 1.09
CD44-222	ENST00000526025	CDH7	Q9ULB5	785 aa		21.89	■■□□□ 1.09
CD44-222	ENST00000526025	SCML2	Q9UQR0	700 aa		21.89	■■□□□ 1.09
CD44-222	ENST00000526025	CEP83	Q9Y592	693 aa		21.89	■■□□□ 1.09
CD44-222	ENST00000526025	LRRC53	A6NM62	1247 aa		21.88	■■□□□ 1.09
CD44-222	ENST00000526025	LSM8	O95777	96 aa	Known RBP	21.88	■■□□□ 1.09
CD44-222	ENST00000526025	GYPC	P04921	128 aa		21.88	■■□□□ 1.09
CD44-222	ENST00000526025	WEE1	P30291	646 aa		21.88	■■□□□ 1.09
CD44-222	ENST00000526025	PRKCI	P41743	596 aa		21.88	■■□□□ 1.09
CD44-222	ENST00000526025	CDR2	Q01850	454 aa		21.88	■■□□□ 1.09
CD44-222	ENST00000526025	TJAP1	Q5JTD0	557 aa		21.88	■■□□□ 1.09
CD44-222	ENST00000526025	SNX30	Q5VWJ9	437 aa		21.88	■■□□□ 1.09
CD44-222	ENST00000526025	DENND1B	Q6P3S1	775 aa		21.88	■■□□□ 1.09
CD44-222	ENST00000526025	GPRIN1	Q7Z2K8	1008 aa		21.88	■■□□□ 1.09
CD44-222	ENST00000526025	CCDC186	Q7Z3E2	898 aa		21.88	■■□□□ 1.09
CD44-222	ENST00000526025	NPAS3	Q8IXF0	933 aa		21.88	■■□□□ 1.09
CD44-222	ENST00000526025	STKLD1	Q8NE28	680 aa		21.88	■■□□□ 1.09
CD44-222	ENST00000526025	SCAMP5	Q8TAC9	235 aa		21.88	■■□□□ 1.09
CD44-222	ENST00000526025	FGF13	Q92913	245 aa		21.88	■■□□□ 1.09
CD44-222	ENST00000526025	TCEAL4	Q96EI5	215 aa		21.88	■■□□□ 1.09
CD44-222	ENST00000526025	NCOR1	O75376	2440 aa		21.88	■■□□□ 1.09
CD44-222	ENST00000526025	C5orf42	Q9H799	3197 aa		21.87	■■□□□ 1.09
CD44-222	ENST00000526025		A0A1W2PRU2	124 aa		21.87	■■□□□ 1.09
CD44-222	ENST00000526025	TADA3	O75528	432 aa		21.87	■■□□□ 1.09
CD44-222	ENST00000526025	ZDHHC11B	P0C7U3	371 aa		21.87	■■□□□ 1.09
CD44-222	ENST00000526025	CEBPB	P17676	345 aa		21.87	■■□□□ 1.09
CD44-222	ENST00000526025	ACADSB	P45954	432 aa		21.87	■■□□□ 1.09
CD44-222	ENST00000526025	ZNF75D	P51815	510 aa		21.87	■■□□□ 1.09
CD44-222	ENST00000526025	ZP2	Q05996	745 aa		21.87	■■□□□ 1.09
CD44-222	ENST00000526025	TAF10	Q12962	218 aa		21.87	■■□□□ 1.09
CD44-222	ENST00000526025	ARHGAP15	Q53QZ3	475 aa		21.87	■■□□□ 1.09
CD44-222	ENST00000526025	SFMBT2	Q5VUG0	894 aa		21.87	■■□□□ 1.09
CD44-222	ENST00000526025	PM20D1	Q6GTS8	502 aa		21.87	■■□□□ 1.09
CD44-222	ENST00000526025	TRIM72	Q6ZMU5	477 aa		21.87	■■□□□ 1.09
CD44-222	ENST00000526025	GET4	Q7L5D6	327 aa	Predicted RBP	21.87	■■□□□ 1.09
CD44-222	ENST00000526025	IRF2BP2	Q7Z5L9	587 aa		21.87	■■□□□ 1.09
CD44-222	ENST00000526025	ZDHHC14	Q8IZN3	488 aa		21.87	■■□□□ 1.09
CD44-222	ENST00000526025	PLCD3	Q8N3E9	789 aa		21.87	■■□□□ 1.09
CD44-222	ENST00000526025	TDRD5	Q8NAT2	981 aa	Known RBP	21.87	■■□□□ 1.09
CD44-222	ENST00000526025	MRPS31	Q92665	395 aa	Known RBP	21.87	■■□□□ 1.09
CD44-222	ENST00000526025	FBXO32	Q969P5	355 aa		21.87	■■□□□ 1.09
CD44-222	ENST00000526025	NOX5	Q96PH1	765 aa		21.87	■■□□□ 1.09
CD44-222	ENST00000526025	SLC4A5	Q9BY07	1137 aa		21.87	■■□□□ 1.09
CD44-222	ENST00000526025	ATXN3L	Q9H3M9	355 aa		21.87	■■□□□ 1.09
CD44-222	ENST00000526025	TRPM5	Q9NZQ8	1165 aa		21.87	■■□□□ 1.09
CD44-222	ENST00000526025	LUC7L2	Q9Y383	392 aa	Known RBP	21.87	■■□□□ 1.09
CD44-222	ENST00000526025	HELZ	P42694	1942 aa	Known RBP	21.86	■■□□□ 1.09
CD44-222	ENST00000526025	LOC730098	B7Z3J9	87 aa		21.86	■■□□□ 1.09

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