RNA–Protein interactions for RNA: ENST00000525348.1

CD44-217, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 568 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-217ENST00000525348 GOLGA6BA6NDN3 693 aa4.92□□□□□ -1.62
CD44-217ENST00000525348 SMIM22K7EJ46 135 aa4.92□□□□□ -1.62
CD44-217ENST00000525348 AP4M1O00189 453 aa4.92□□□□□ -1.62
CD44-217ENST00000525348 RRP9O43818 475 aaKnown RBP4.92□□□□□ -1.62
CD44-217ENST00000525348 MARCH6O60337 910 aa4.92□□□□□ -1.62
CD44-217ENST00000525348 MAP4K4O95819 1239 aaPredicted RBP4.92□□□□□ -1.62
CD44-217ENST00000525348 NPSP0C0P6 89 aa4.92□□□□□ -1.62
CD44-217ENST00000525348 GOLGA6DP0CG33 693 aa4.92□□□□□ -1.62
CD44-217ENST00000525348 BCAT1P54687 386 aa4.92□□□□□ -1.62
CD44-217ENST00000525348 FAM193AP78312 1265 aa4.92□□□□□ -1.62
CD44-217ENST00000525348 PSG6Q00889 435 aa4.92□□□□□ -1.62
CD44-217ENST00000525348 SLC44A4Q53GD3 710 aa4.92□□□□□ -1.62
CD44-217ENST00000525348 RNASE12Q5GAN4 147 aaKnown RBP4.92□□□□□ -1.62
CD44-217ENST00000525348 CACHD1Q5VU97 1274 aa4.92□□□□□ -1.62
CD44-217ENST00000525348 ZNF804AQ7Z570 1209 aa4.92□□□□□ -1.62
CD44-217ENST00000525348 CYP2W1Q8TAV3 490 aa4.92□□□□□ -1.62
CD44-217ENST00000525348 PPP1R9BQ96SB3 815 aa4.92□□□□□ -1.62
CD44-217ENST00000525348 APOL5Q9BWW9 433 aa4.92□□□□□ -1.62
CD44-217ENST00000525348 TRIM5Q9C035 493 aa4.92□□□□□ -1.62
CD44-217ENST00000525348 LRRC27Q9C0I9 530 aa4.92□□□□□ -1.62
CD44-217ENST00000525348 CHST8Q9H2A9 424 aa4.92□□□□□ -1.62
CD44-217ENST00000525348 AS3MTQ9HBK9 375 aa4.92□□□□□ -1.62
CD44-217ENST00000525348 TRMT13Q9NUP7 481 aaKnown RBP4.92□□□□□ -1.62
CD44-217ENST00000525348 GOLGA6AQ9NYA3 693 aa4.92□□□□□ -1.62
CD44-217ENST00000525348 OGDHLQ9ULD0 1010 aa4.92□□□□□ -1.62
CD44-217ENST00000525348 PAXBP1Q9Y5B6 917 aa4.92□□□□□ -1.62
CD44-217ENST00000525348 LOC102723971A0A1B0GUV8 181 aa4.91□□□□□ -1.62
CD44-217ENST00000525348 DNAJC9-AS1A6NH13 148 aa4.91□□□□□ -1.62
CD44-217ENST00000525348 F8W8V4 182 aa4.91□□□□□ -1.62
CD44-217ENST00000525348 AGPSO00116 658 aa4.91□□□□□ -1.62
CD44-217ENST00000525348 CD3EAPO15446 510 aaKnown RBP4.91□□□□□ -1.62
CD44-217ENST00000525348 RASSF9O75901 435 aa4.91□□□□□ -1.62
CD44-217ENST00000525348 CELA2AP08217 269 aa4.91□□□□□ -1.62
CD44-217ENST00000525348 TXNP10599 105 aaKnown RBP4.91□□□□□ -1.62
CD44-217ENST00000525348 PTDSS1P48651 473 aaKnown RBP4.91□□□□□ -1.62
CD44-217ENST00000525348 ITGA8P53708 1063 aa4.91□□□□□ -1.62
CD44-217ENST00000525348 CERCAMQ5T4B2 595 aa4.91□□□□□ -1.62
CD44-217ENST00000525348 KIRREL2Q6UWL6 708 aa4.91□□□□□ -1.62
CD44-217ENST00000525348 SPARTQ8N0X7 666 aa4.91□□□□□ -1.62
CD44-217ENST00000525348 ZBTB45Q96K62 511 aaPredicted RBP4.91□□□□□ -1.62
CD44-217ENST00000525348 PUS7Q96PZ0 661 aaKnown RBP4.91□□□□□ -1.62
CD44-217ENST00000525348 ZNF287Q9HBT7 754 aa4.91□□□□□ -1.62
CD44-217ENST00000525348 ZSCAN32Q9NX65 697 aa4.91□□□□□ -1.62
CD44-217ENST00000525348 LPAR3Q9UBY5 353 aa4.91□□□□□ -1.62
CD44-217ENST00000525348 MID2Q9UJV3 735 aa4.91□□□□□ -1.62
CD44-217ENST00000525348 CCNL1Q9UK58 526 aaPredicted RBP4.91□□□□□ -1.62
CD44-217ENST00000525348 SETD1BQ9UPS6 1966 aaKnown RBP4.91□□□□□ -1.62
CD44-217ENST00000525348 PPM1GO15355 546 aaPredicted RBP4.9□□□□□ -1.63
CD44-217ENST00000525348 CCP110O43303 1012 aa4.9□□□□□ -1.63
CD44-217ENST00000525348 MGEA5O60502 916 aa4.9□□□□□ -1.63
CD44-217ENST00000525348 RASAL1O95294 804 aa4.9□□□□□ -1.63
CD44-217ENST00000525348 PARNO95453 639 aaKnown RBP4.9□□□□□ -1.63
CD44-217ENST00000525348 HGFP14210 728 aa4.9□□□□□ -1.63
CD44-217ENST00000525348 UQCRC1P31930 480 aa4.9□□□□□ -1.63
CD44-217ENST00000525348 ABCG1P45844 678 aa4.9□□□□□ -1.63
CD44-217ENST00000525348 HTRA4P83105 476 aaPredicted RBP4.9□□□□□ -1.63
CD44-217ENST00000525348 HOXA4Q00056 320 aaPredicted RBP4.9□□□□□ -1.63
CD44-217ENST00000525348 TIAL1Q01085 375 aaKnown RBP eCLIP4.9□□□□□ -1.63
CD44-217ENST00000525348 SLC10A2Q12908 348 aaPredicted RBP4.9□□□□□ -1.63
CD44-217ENST00000525348 CCNIQ14094 377 aa4.9□□□□□ -1.63
CD44-217ENST00000525348 ARHGEF7Q14155 803 aa4.9□□□□□ -1.63
CD44-217ENST00000525348 INSCQ1MX18 579 aa4.9□□□□□ -1.63
CD44-217ENST00000525348 ZNF750Q32MQ0 723 aa4.9□□□□□ -1.63
CD44-217ENST00000525348 L1TD1Q5T7N2 865 aaKnown RBP4.9□□□□□ -1.63
CD44-217ENST00000525348 PRAMEF17Q5VTA0 474 aa4.9□□□□□ -1.63
CD44-217ENST00000525348 TRIM72Q6ZMU5 477 aa4.9□□□□□ -1.63
CD44-217ENST00000525348 UNC13DQ70J99 1090 aa4.9□□□□□ -1.63
CD44-217ENST00000525348 CHSY1Q86X52 802 aa4.9□□□□□ -1.63
CD44-217ENST00000525348 ABHD11Q8NFV4 315 aa4.9□□□□□ -1.63
CD44-217ENST00000525348 CTHRC1Q96CG8 243 aa4.9□□□□□ -1.63
CD44-217ENST00000525348 RITA1Q96K30 269 aa4.9□□□□□ -1.63
CD44-217ENST00000525348 MSLNLQ96KJ4 702 aa4.9□□□□□ -1.63
CD44-217ENST00000525348 PRDM11Q9NQV5 511 aa4.9□□□□□ -1.63
CD44-217ENST00000525348 FLRT1Q9NZU1 646 aa4.9□□□□□ -1.63
CD44-217ENST00000525348 RGS17Q9UGC6 210 aaPredicted RBP4.9□□□□□ -1.63
CD44-217ENST00000525348 DRG1Q9Y295 367 aaKnown RBP4.9□□□□□ -1.63
CD44-217ENST00000525348 RAB27BO00194 218 aa4.89□□□□□ -1.63
CD44-217ENST00000525348 PMPCBO75439 489 aa4.89□□□□□ -1.63
CD44-217ENST00000525348 ACVR2AP27037 513 aa4.89□□□□□ -1.63
CD44-217ENST00000525348 GKP32189 559 aa4.89□□□□□ -1.63
CD44-217ENST00000525348 DGKHQ86XP1 1220 aa4.89□□□□□ -1.63
CD44-217ENST00000525348 VGLL2Q8N8G2 317 aa4.89□□□□□ -1.63
CD44-217ENST00000525348 TERB1Q8NA31 727 aa4.89□□□□□ -1.63
CD44-217ENST00000525348 RSPRY1Q96DX4 576 aa4.89□□□□□ -1.63
CD44-217ENST00000525348 WDYHV1Q96HA8 205 aa4.89□□□□□ -1.63
CD44-217ENST00000525348 SH2D3AQ9BRG2 576 aa4.89□□□□□ -1.63
CD44-217ENST00000525348 DPCDQ9BVM2 203 aaPredicted RBP4.89□□□□□ -1.63
CD44-217ENST00000525348 DHX36Q9H2U1 1008 aaKnown RBP4.89□□□□□ -1.63
CD44-217ENST00000525348 METTL14Q9HCE5 456 aaKnown RBP4.89□□□□□ -1.63
CD44-217ENST00000525348 DDX21Q9NR30 783 aaKnown RBP eCLIP4.89□□□□□ -1.63
CD44-217ENST00000525348 ASIC5Q9NY37 505 aa4.89□□□□□ -1.63
CD44-217ENST00000525348 DKK4Q9UBT3 224 aa4.89□□□□□ -1.63
CD44-217ENST00000525348 HDAC9Q9UKV0 1011 aa4.89□□□□□ -1.63
CD44-217ENST00000525348 TCRBV5S1A1TA0A578 114 aa4.88□□□□□ -1.63
CD44-217ENST00000525348 PRRT4C9JH25 899 aa4.88□□□□□ -1.63
CD44-217ENST00000525348 ADAMTS3O15072 1205 aa4.88□□□□□ -1.63
CD44-217ENST00000525348 SPRY2O43597 315 aa4.88□□□□□ -1.63
CD44-217ENST00000525348 RGS10O43665 173 aa4.88□□□□□ -1.63
CD44-217ENST00000525348 EXOC3O60645 756 aa4.88□□□□□ -1.63
CD44-217ENST00000525348 PIAS2O75928 621 aa4.88□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms