RNA–Protein interactions for RNA: ENST00000511496.5

LIMCH1-213, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,439 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-213ENST00000511496 OSTM1Q86WC4 334 aa12.53□□□□□ -0.4
LIMCH1-213ENST00000511496 PLBD2Q8NHP8 589 aa12.53□□□□□ -0.4
LIMCH1-213ENST00000511496 MECRQ9BV79 373 aa12.53□□□□□ -0.4
LIMCH1-213ENST00000511496 IFT122Q9HBG6 1241 aa12.53□□□□□ -0.4
LIMCH1-213ENST00000511496 DNAJC12Q9UKB3 198 aa12.53□□□□□ -0.4
LIMCH1-213ENST00000511496 DSEQ9UL01 958 aa12.53□□□□□ -0.4
LIMCH1-213ENST00000511496 IFT52Q9Y366 437 aa12.53□□□□□ -0.4
LIMCH1-213ENST00000511496 HEG1Q9ULI3 1381 aa12.52□□□□□ -0.4
LIMCH1-213ENST00000511496 GOLGA8CPA6NN73 597 aa12.52□□□□□ -0.4
LIMCH1-213ENST00000511496 I3L4J1 428 aa12.52□□□□□ -0.4
LIMCH1-213ENST00000511496 KPNA4O00629 521 aaPredicted RBP12.52□□□□□ -0.4
LIMCH1-213ENST00000511496 TNPO2O14787 897 aaKnown RBP12.52□□□□□ -0.4
LIMCH1-213ENST00000511496 SORBS3O60504 671 aa12.52□□□□□ -0.4
LIMCH1-213ENST00000511496 PTPN2P17706 415 aa12.52□□□□□ -0.4
LIMCH1-213ENST00000511496 EIF3EP60228 445 aaKnown RBP12.52□□□□□ -0.4
LIMCH1-213ENST00000511496 TMPRSS15P98073 1019 aa12.52□□□□□ -0.4
LIMCH1-213ENST00000511496 PTK7Q13308 1070 aa12.52□□□□□ -0.4
LIMCH1-213ENST00000511496 PPP6R3Q5H9R7 873 aaPredicted RBP12.52□□□□□ -0.4
LIMCH1-213ENST00000511496 KAZNQ674X7 775 aa12.52□□□□□ -0.4
LIMCH1-213ENST00000511496 FAM117BQ6P1L5 589 aa12.52□□□□□ -0.4
LIMCH1-213ENST00000511496 EBF4Q9BQW3 602 aa12.52□□□□□ -0.4
LIMCH1-213ENST00000511496 WWP1Q9H0M0 922 aa12.52□□□□□ -0.4
LIMCH1-213ENST00000511496 C10orf88Q9H8K7 445 aa12.52□□□□□ -0.4
LIMCH1-213ENST00000511496 GNPTGQ9UJJ9 305 aa12.52□□□□□ -0.4
LIMCH1-213ENST00000511496 BCS1LQ9Y276 419 aa12.52□□□□□ -0.4
LIMCH1-213ENST00000511496 CROCCQ5TZA2 2017 aa12.52□□□□□ -0.41
LIMCH1-213ENST00000511496 LAD1O00515 517 aa12.52□□□□□ -0.41
LIMCH1-213ENST00000511496 PTK6Q13882 451 aa12.52□□□□□ -0.41
LIMCH1-213ENST00000511496 ARHGEF6Q15052 776 aa12.52□□□□□ -0.41
LIMCH1-213ENST00000511496 HSF5Q4G112 596 aaPredicted RBP12.52□□□□□ -0.41
LIMCH1-213ENST00000511496 GALNT18Q6P9A2 607 aa12.52□□□□□ -0.41
LIMCH1-213ENST00000511496 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP12.52□□□□□ -0.41
LIMCH1-213ENST00000511496 RAD54LQ92698 747 aa12.52□□□□□ -0.41
LIMCH1-213ENST00000511496 WNT8AQ9H1J5 351 aa12.52□□□□□ -0.41
LIMCH1-213ENST00000511496 EPS15L1Q9UBC2 864 aa12.52□□□□□ -0.41
LIMCH1-213ENST00000511496 PSMD13Q9UNM6 376 aa12.52□□□□□ -0.41
LIMCH1-213ENST00000511496 KIDINS220Q9ULH0 1771 aa12.52□□□□□ -0.41
LIMCH1-213ENST00000511496 SNAP23O00161 211 aa12.52□□□□□ -0.41
LIMCH1-213ENST00000511496 ICMTO60725 284 aa12.52□□□□□ -0.41
LIMCH1-213ENST00000511496 TGDSO95455 350 aa12.52□□□□□ -0.41
LIMCH1-213ENST00000511496 CRYZL1O95825 349 aa12.52□□□□□ -0.41
LIMCH1-213ENST00000511496 STAT3P40763 770 aa12.52□□□□□ -0.41
LIMCH1-213ENST00000511496 ALDH3B2P48448 385 aa12.52□□□□□ -0.41
LIMCH1-213ENST00000511496 PRAMEP78395 509 aa12.52□□□□□ -0.41
LIMCH1-213ENST00000511496 PPM1LQ5SGD2 360 aa12.52□□□□□ -0.41
LIMCH1-213ENST00000511496 ZNF618Q5T7W0 954 aa12.52□□□□□ -0.41
LIMCH1-213ENST00000511496 SNX29P2Q8IUI4 249 aa12.52□□□□□ -0.41
LIMCH1-213ENST00000511496 NATD1Q8N6N6 113 aa12.52□□□□□ -0.41
LIMCH1-213ENST00000511496 SLC20A1Q8WUM9 679 aa12.52□□□□□ -0.41
LIMCH1-213ENST00000511496 COQ7Q99807 217 aa12.52□□□□□ -0.41
LIMCH1-213ENST00000511496 TP63Q9H3D4 680 aaPredicted RBP12.52□□□□□ -0.41
LIMCH1-213ENST00000511496 SIX2Q9NPC8 291 aa12.52□□□□□ -0.41
LIMCH1-213ENST00000511496 KIAA1257Q9ULG3 409 aa12.52□□□□□ -0.41
LIMCH1-213ENST00000511496 PCDHB2Q9Y5E7 798 aa12.52□□□□□ -0.41
LIMCH1-213ENST00000511496 ATP2A1O14983 1001 aa12.51□□□□□ -0.41
LIMCH1-213ENST00000511496 CLIC2O15247 247 aa12.51□□□□□ -0.41
LIMCH1-213ENST00000511496 CCNT2O60583 730 aaKnown RBP12.51□□□□□ -0.41
LIMCH1-213ENST00000511496 H6PDO95479 791 aa12.51□□□□□ -0.41
LIMCH1-213ENST00000511496 ANXA13P27216 316 aa12.51□□□□□ -0.41
LIMCH1-213ENST00000511496 PRDX6P30041 224 aa12.51□□□□□ -0.41
LIMCH1-213ENST00000511496 JAM2P57087 298 aa12.51□□□□□ -0.41
LIMCH1-213ENST00000511496 EPHA7Q15375 998 aa12.51□□□□□ -0.41
LIMCH1-213ENST00000511496 CENPUQ71F23 418 aa12.51□□□□□ -0.41
LIMCH1-213ENST00000511496 DEPDC4Q8N2C3 294 aa12.51□□□□□ -0.41
LIMCH1-213ENST00000511496 TAB3Q8N5C8 712 aaPredicted RBP12.51□□□□□ -0.41
LIMCH1-213ENST00000511496 VGLL2Q8N8G2 317 aa12.51□□□□□ -0.41
LIMCH1-213ENST00000511496 CCDC106Q9BWC9 280 aa12.51□□□□□ -0.41
LIMCH1-213ENST00000511496 WDR6Q9NNW5 1121 aaKnown RBP12.51□□□□□ -0.41
LIMCH1-213ENST00000511496 MYRFQ9Y2G1 1151 aa12.51□□□□□ -0.41
LIMCH1-213ENST00000511496 KAT6BQ8WYB5 2073 aa12.51□□□□□ -0.41
LIMCH1-213ENST00000511496 ARHGEF37A1IGU5 675 aa12.51□□□□□ -0.41
LIMCH1-213ENST00000511496 NOP56O00567 594 aaKnown RBP12.51□□□□□ -0.41
LIMCH1-213ENST00000511496 KMOO15229 486 aa12.51□□□□□ -0.41
LIMCH1-213ENST00000511496 MT-ND3P03897 115 aa12.51□□□□□ -0.41
LIMCH1-213ENST00000511496 IL6STP40189 918 aaPredicted RBP12.51□□□□□ -0.41
LIMCH1-213ENST00000511496 CASP4P49662 377 aa12.51□□□□□ -0.41
LIMCH1-213ENST00000511496 COPAP53621 1224 aa12.51□□□□□ -0.41
LIMCH1-213ENST00000511496 CSE1LP55060 971 aaKnown RBP12.51□□□□□ -0.41
LIMCH1-213ENST00000511496 NME3Q13232 169 aa12.51□□□□□ -0.41
LIMCH1-213ENST00000511496 UBE2SQ16763 222 aa12.51□□□□□ -0.41
LIMCH1-213ENST00000511496 ELMOD1Q8N336 334 aa12.51□□□□□ -0.41
LIMCH1-213ENST00000511496 GCOM2Q9BZD3 368 aaPredicted RBP12.51□□□□□ -0.41
LIMCH1-213ENST00000511496 HIPK3Q9H422 1215 aa12.51□□□□□ -0.41
LIMCH1-213ENST00000511496 KCNK4Q9NYG8 393 aa12.51□□□□□ -0.41
LIMCH1-213ENST00000511496 TXNDC16Q9P2K2 825 aa12.51□□□□□ -0.41
LIMCH1-213ENST00000511496 BCAP29Q9UHQ4 241 aa12.51□□□□□ -0.41
LIMCH1-213ENST00000511496 RNF11Q9Y3C5 154 aa12.51□□□□□ -0.41
LIMCH1-213ENST00000511496 CCRL2O00421 344 aa12.5□□□□□ -0.41
LIMCH1-213ENST00000511496 ZSCAN5DPP0CG00 497 aa12.5□□□□□ -0.41
LIMCH1-213ENST00000511496 ZNF182P17025 639 aaPredicted RBP12.5□□□□□ -0.41
LIMCH1-213ENST00000511496 SSTR1P30872 391 aa12.5□□□□□ -0.41
LIMCH1-213ENST00000511496 GPC5P78333 572 aa12.5□□□□□ -0.41
LIMCH1-213ENST00000511496 IFITM2Q01629 132 aa12.5□□□□□ -0.41
LIMCH1-213ENST00000511496 SELENBP1Q13228 472 aa12.5□□□□□ -0.41
LIMCH1-213ENST00000511496 AARS2Q5JTZ9 985 aaKnown RBP12.5□□□□□ -0.41
LIMCH1-213ENST00000511496 KRT79Q5XKE5 535 aa12.5□□□□□ -0.41
LIMCH1-213ENST00000511496 KBTBD6Q86V97 674 aa12.5□□□□□ -0.41
LIMCH1-213ENST00000511496 ESX1Q8N693 406 aa12.5□□□□□ -0.41
LIMCH1-213ENST00000511496 RMND5BQ96G75 393 aaPredicted RBP12.5□□□□□ -0.41
LIMCH1-213ENST00000511496 C17orf75Q9HAS0 396 aa12.5□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms