RNA–Protein interactions for RNA: ENST00000509638.5

LIMCH1-211, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 1,570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-211ENST00000509638 SKILP12757 684 aa31.25■■■□□ 2.59
LIMCH1-211ENST00000509638 RGS7P49802 495 aa31.25■■■□□ 2.59
LIMCH1-211ENST00000509638 NTHL1P78549 312 aa31.25■■■□□ 2.59
LIMCH1-211ENST00000509638 PABPC1LQ4VXU2 614 aaKnown RBP31.25■■■□□ 2.59
LIMCH1-211ENST00000509638 TDRD12Q587J7 1177 aaKnown RBP31.25■■■□□ 2.59
LIMCH1-211ENST00000509638 PMF1Q6P1K2 205 aa31.25■■■□□ 2.59
LIMCH1-211ENST00000509638 HS6ST3Q8IZP7 471 aa31.25■■■□□ 2.59
LIMCH1-211ENST00000509638 SPC24Q8NBT2 197 aa31.25■■■□□ 2.59
LIMCH1-211ENST00000509638 OR8K1Q8NGG5 319 aa31.25■■■□□ 2.59
LIMCH1-211ENST00000509638 LHX5Q9H2C1 402 aa31.25■■■□□ 2.59
LIMCH1-211ENST00000509638 CYTH4Q9UIA0 394 aa31.25■■■□□ 2.59
LIMCH1-211ENST00000509638 USP15Q9Y4E8 981 aaPredicted RBP31.25■■■□□ 2.59
LIMCH1-211ENST00000509638 DENND4CQ5VZ89 1909 aa31.24■■■□□ 2.59
LIMCH1-211ENST00000509638 RHOP08100 348 aa31.24■■■□□ 2.59
LIMCH1-211ENST00000509638 PTPN2P17706 415 aa31.24■■■□□ 2.59
LIMCH1-211ENST00000509638 HNRNPH3P31942 346 aaKnown RBP31.24■■■□□ 2.59
LIMCH1-211ENST00000509638 ARID5BQ14865 1188 aa31.24■■■□□ 2.59
LIMCH1-211ENST00000509638 HGSNATQ68CP4 663 aa31.24■■■□□ 2.59
LIMCH1-211ENST00000509638 TRMT2BQ96GJ1 504 aaKnown RBP31.24■■■□□ 2.59
LIMCH1-211ENST00000509638 AGPAT1Q99943 283 aa31.24■■■□□ 2.59
LIMCH1-211ENST00000509638 UBXN6Q9BZV1 441 aa31.24■■■□□ 2.59
LIMCH1-211ENST00000509638 SEPT11Q9NVA2 429 aaKnown RBP31.24■■■□□ 2.59
LIMCH1-211ENST00000509638 RTN3O95197 1032 aaPredicted RBP31.23■■■□□ 2.59
LIMCH1-211ENST00000509638 LSM8O95777 96 aaKnown RBP31.23■■■□□ 2.59
LIMCH1-211ENST00000509638 PDCLQ13371 301 aa31.23■■■□□ 2.59
LIMCH1-211ENST00000509638 SMAD4Q13485 552 aaKnown RBP31.23■■■□□ 2.59
LIMCH1-211ENST00000509638 RIPOR3Q96MK2 946 aa31.23■■■□□ 2.59
LIMCH1-211ENST00000509638 SYT11Q9BT88 431 aa31.23■■■□□ 2.59
LIMCH1-211ENST00000509638 TTLL2Q9BWV7 592 aa31.23■■■□□ 2.59
LIMCH1-211ENST00000509638 LRRC3Q9BY71 257 aa31.23■■■□□ 2.59
LIMCH1-211ENST00000509638 FAM170AA1A519 330 aa31.22■■■□□ 2.59
LIMCH1-211ENST00000509638 SERPING1P05155 500 aa31.22■■■□□ 2.59
LIMCH1-211ENST00000509638 EPHA5P54756 1037 aa31.22■■■□□ 2.59
LIMCH1-211ENST00000509638 TFF2Q03403 129 aa31.22■■■□□ 2.59
LIMCH1-211ENST00000509638 ATAT1Q5SQI0 421 aa31.22■■■□□ 2.59
LIMCH1-211ENST00000509638 PDZD4Q76G19 769 aaPredicted RBP31.22■■■□□ 2.59
LIMCH1-211ENST00000509638 ZNF571Q7Z3V5 609 aaPredicted RBP31.22■■■□□ 2.59
LIMCH1-211ENST00000509638 WDTC1Q8N5D0 677 aa31.22■■■□□ 2.59
LIMCH1-211ENST00000509638 TC2NQ8N9U0 490 aa31.22■■■□□ 2.59
LIMCH1-211ENST00000509638 TMEM35BQ8NCS4 154 aa31.22■■■□□ 2.59
LIMCH1-211ENST00000509638 MYRFLQ96LU7 910 aa31.22■■■□□ 2.59
LIMCH1-211ENST00000509638 ST7Q9NRC1 585 aa31.22■■■□□ 2.59
LIMCH1-211ENST00000509638 EHD2Q9NZN4 543 aa31.22■■■□□ 2.59
LIMCH1-211ENST00000509638 CLUHO75153 1309 aa31.22■■■□□ 2.59
LIMCH1-211ENST00000509638 GRXCR2A6NFK2 248 aa31.22■■■□□ 2.59
LIMCH1-211ENST00000509638 MYL4P12829 197 aa31.22■■■□□ 2.59
LIMCH1-211ENST00000509638 CDH5P33151 784 aaPredicted RBP31.22■■■□□ 2.59
LIMCH1-211ENST00000509638 MTHFRP42898 656 aa31.22■■■□□ 2.59
LIMCH1-211ENST00000509638 ADIGQ0VDE8 80 aa31.22■■■□□ 2.59
LIMCH1-211ENST00000509638 RAB41Q5JT25 222 aa31.22■■■□□ 2.59
LIMCH1-211ENST00000509638 TRIM72Q6ZMU5 477 aa31.22■■■□□ 2.59
LIMCH1-211ENST00000509638 LEMD2Q8NC56 503 aa31.22■■■□□ 2.59
LIMCH1-211ENST00000509638 OLIG1Q8TAK6 271 aa31.22■■■□□ 2.59
LIMCH1-211ENST00000509638 KCTD13Q8WZ19 329 aa31.22■■■□□ 2.59
LIMCH1-211ENST00000509638 SUSD6Q92537 303 aa31.22■■■□□ 2.59
LIMCH1-211ENST00000509638 LRRC4Q9HBW1 653 aa31.22■■■□□ 2.59
LIMCH1-211ENST00000509638 UXTQ9UBK9 157 aaPredicted RBP31.22■■■□□ 2.59
LIMCH1-211ENST00000509638 ANAPC1Q9H1A4 1944 aa31.21■■■□□ 2.59
LIMCH1-211ENST00000509638 PLEKP08567 350 aaPredicted RBP31.21■■■□□ 2.59
LIMCH1-211ENST00000509638 KIF11P52732 1056 aa31.21■■■□□ 2.59
LIMCH1-211ENST00000509638 NOMO3P69849 1222 aa31.21■■■□□ 2.59
LIMCH1-211ENST00000509638 SLC5A9Q2M3M2 681 aa31.21■■■□□ 2.59
LIMCH1-211ENST00000509638 TSR1Q2NL82 804 aaKnown RBP31.21■■■□□ 2.59
LIMCH1-211ENST00000509638 LEXMQ3ZCV2 418 aa31.21■■■□□ 2.59
LIMCH1-211ENST00000509638 WDR6Q9NNW5 1121 aaKnown RBP31.21■■■□□ 2.59
LIMCH1-211ENST00000509638 ZNHIT6Q9NWK9 470 aaKnown RBP31.21■■■□□ 2.59
LIMCH1-211ENST00000509638 THEGQ9P2T0 379 aa31.21■■■□□ 2.59
LIMCH1-211ENST00000509638 BZW2Q9Y6E2 419 aaKnown RBP31.21■■■□□ 2.59
LIMCH1-211ENST00000509638 PIK3R2O00459 728 aa31.2■■■□□ 2.58
LIMCH1-211ENST00000509638 MBTPS2O43462 519 aa31.2■■■□□ 2.58
LIMCH1-211ENST00000509638 YWHAQP27348 245 aa31.2■■■□□ 2.58
LIMCH1-211ENST00000509638 CCR2P41597 374 aa31.2■■■□□ 2.58
LIMCH1-211ENST00000509638 TKTL1P51854 596 aa31.2■■■□□ 2.58
LIMCH1-211ENST00000509638 CBX2Q14781 532 aaPredicted RBP31.2■■■□□ 2.58
LIMCH1-211ENST00000509638 CYP4A22Q5TCH4 519 aa31.2■■■□□ 2.58
LIMCH1-211ENST00000509638 NAA35Q5VZE5 725 aa31.2■■■□□ 2.58
LIMCH1-211ENST00000509638 WDR59Q6PJI9 974 aa31.2■■■□□ 2.58
LIMCH1-211ENST00000509638 SIX6OS1Q8N1H7 587 aa31.2■■■□□ 2.58
LIMCH1-211ENST00000509638 STK32AQ8WU08 396 aa31.2■■■□□ 2.58
LIMCH1-211ENST00000509638 FBXO32Q969P5 355 aa31.2■■■□□ 2.58
LIMCH1-211ENST00000509638 HSFY1Q96LI6 401 aa31.2■■■□□ 2.58
LIMCH1-211ENST00000509638 NOX5Q96PH1 765 aa31.2■■■□□ 2.58
LIMCH1-211ENST00000509638 PCDHB18PQ96TA0 734 aa31.2■■■□□ 2.58
LIMCH1-211ENST00000509638 FBXO44Q9H4M3 255 aa31.2■■■□□ 2.58
LIMCH1-211ENST00000509638 IL21Q9HBE4 155 aa31.2■■■□□ 2.58
LIMCH1-211ENST00000509638 IL37Q9NZH6 218 aa31.2■■■□□ 2.58
LIMCH1-211ENST00000509638 IMPACTQ9P2X3 320 aa31.2■■■□□ 2.58
LIMCH1-211ENST00000509638 GABRR2P28476 465 aa31.19■■■□□ 2.58
LIMCH1-211ENST00000509638 NECTIN4Q96NY8 510 aa31.19■■■□□ 2.58
LIMCH1-211ENST00000509638 SLITRK1Q96PX8 696 aa31.19■■■□□ 2.58
LIMCH1-211ENST00000509638 CPXM1Q96SM3 734 aa31.19■■■□□ 2.58
LIMCH1-211ENST00000509638 POMKQ9H5K3 350 aa31.19■■■□□ 2.58
LIMCH1-211ENST00000509638 ARHGAP20Q9P2F6 1191 aa31.19■■■□□ 2.58
LIMCH1-211ENST00000509638 NRG2O14511 850 aaPredicted RBP31.18■■■□□ 2.58
LIMCH1-211ENST00000509638 TADA3O75528 432 aa31.18■■■□□ 2.58
LIMCH1-211ENST00000509638 GABBR2O75899 941 aa31.18■■■□□ 2.58
LIMCH1-211ENST00000509638 CYP1A1P04798 512 aaPredicted RBP31.18■■■□□ 2.58
LIMCH1-211ENST00000509638 LCP1P13796 627 aa31.18■■■□□ 2.58
LIMCH1-211ENST00000509638 TAF10Q12962 218 aa31.18■■■□□ 2.58
LIMCH1-211ENST00000509638 PRSS36Q5K4E3 855 aa31.18■■■□□ 2.58
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms