RNA–Protein interactions for RNA: ENST00000508342.5

NEDD4-208, Transcript of neural precursor cell expressed, developmentally down-regulated 4, E3 ubiquitin protein ligase, humanhuman

TSL 1 (best) BASIC

Gene NEDD4, Length 7,235 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD4-208ENST00000508342 MRPL42Q9Y6G3 142 aaKnown RBP3.09□□□□□ -1.92
NEDD4-208ENST00000508342 CLUHO75153 1309 aa3.09□□□□□ -1.92
NEDD4-208ENST00000508342 PTPRJQ12913 1337 aa3.09□□□□□ -1.92
NEDD4-208ENST00000508342 IFRD1O00458 451 aaPredicted RBP3.09□□□□□ -1.92
NEDD4-208ENST00000508342 OPHN1O60890 802 aa3.09□□□□□ -1.92
NEDD4-208ENST00000508342 SERPIND1P05546 499 aa3.09□□□□□ -1.92
NEDD4-208ENST00000508342 VCLP18206 1134 aa3.09□□□□□ -1.92
NEDD4-208ENST00000508342 CDC27P30260 824 aa3.09□□□□□ -1.92
NEDD4-208ENST00000508342 RPL9P32969 192 aaKnown RBP3.09□□□□□ -1.92
NEDD4-208ENST00000508342 OR1D2P34982 312 aa3.09□□□□□ -1.92
NEDD4-208ENST00000508342 HSD17B4P51659 736 aa3.09□□□□□ -1.92
NEDD4-208ENST00000508342 VCPP55072 806 aaKnown RBP3.09□□□□□ -1.92
NEDD4-208ENST00000508342 PDE1BQ01064 536 aa3.09□□□□□ -1.92
NEDD4-208ENST00000508342 DEUP1Q05D60 604 aa3.09□□□□□ -1.92
NEDD4-208ENST00000508342 GFPT1Q06210 699 aaPredicted RBP3.09□□□□□ -1.92
NEDD4-208ENST00000508342 ARHGAP1Q07960 439 aa3.09□□□□□ -1.92
NEDD4-208ENST00000508342 LPIN1Q14693 890 aa3.09□□□□□ -1.92
NEDD4-208ENST00000508342 STAT4Q14765 748 aa3.09□□□□□ -1.92
NEDD4-208ENST00000508342 TEAD2Q15562 447 aa3.09□□□□□ -1.92
NEDD4-208ENST00000508342 RNF43Q68DV7 783 aa3.09□□□□□ -1.92
NEDD4-208ENST00000508342 FCRLBQ6BAA4 426 aa3.09□□□□□ -1.92
NEDD4-208ENST00000508342 PRPF39Q86UA1 669 aaKnown RBP3.09□□□□□ -1.92
NEDD4-208ENST00000508342 KCTD6Q8NC69 237 aa3.09□□□□□ -1.92
NEDD4-208ENST00000508342 PPHLN1Q8NEY8 458 aaKnown RBP3.09□□□□□ -1.92
NEDD4-208ENST00000508342 CXorf40AQ8TE69 158 aa3.09□□□□□ -1.92
NEDD4-208ENST00000508342 SCG3Q8WXD2 468 aaKnown RBP3.09□□□□□ -1.92
NEDD4-208ENST00000508342 VPS39Q96JC1 886 aa3.09□□□□□ -1.92
NEDD4-208ENST00000508342 MAGEB10Q96LZ2 347 aaPredicted RBP3.09□□□□□ -1.92
NEDD4-208ENST00000508342 TEX12Q9BXU0 123 aa3.09□□□□□ -1.92
NEDD4-208ENST00000508342 HACD3Q9P035 362 aa3.09□□□□□ -1.92
NEDD4-208ENST00000508342 FTSJ1Q9UET6 329 aa3.09□□□□□ -1.92
NEDD4-208ENST00000508342 DNMT3LQ9UJW3 386 aa3.09□□□□□ -1.92
NEDD4-208ENST00000508342 TDRD15B5MCY1 1934 aaKnown RBP3.09□□□□□ -1.92
NEDD4-208ENST00000508342 BTBD18B2RXH4 712 aa3.08□□□□□ -1.92
NEDD4-208ENST00000508342 MYO1FO00160 1098 aa3.08□□□□□ -1.92
NEDD4-208ENST00000508342 RECQL4O94761 1208 aa3.08□□□□□ -1.92
NEDD4-208ENST00000508342 TPPPO94811 219 aa3.08□□□□□ -1.92
NEDD4-208ENST00000508342 YWHAQP27348 245 aa3.08□□□□□ -1.92
NEDD4-208ENST00000508342 BMP8BP34820 402 aa3.08□□□□□ -1.92
NEDD4-208ENST00000508342 INPP1P49441 399 aa3.08□□□□□ -1.92
NEDD4-208ENST00000508342 CYP4F8P98187 520 aa3.08□□□□□ -1.92
NEDD4-208ENST00000508342 EFEMP1Q12805 493 aa3.08□□□□□ -1.92
NEDD4-208ENST00000508342 PDCD2Q16342 344 aaPredicted RBP3.08□□□□□ -1.92
NEDD4-208ENST00000508342 POM121L1PQ3SYA9 428 aa3.08□□□□□ -1.92
NEDD4-208ENST00000508342 PLEKHG4Q58EX7 1191 aa3.08□□□□□ -1.92
NEDD4-208ENST00000508342 LURAP1LQ8IV03 231 aa3.08□□□□□ -1.92
NEDD4-208ENST00000508342 MB21D2Q8IYB1 491 aaPredicted RBP3.08□□□□□ -1.92
NEDD4-208ENST00000508342 TTC39CQ8N584 583 aa3.08□□□□□ -1.92
NEDD4-208ENST00000508342 VPS50Q96JG6 964 aa3.08□□□□□ -1.92
NEDD4-208ENST00000508342 HERC2P3Q9BVR0 1158 aa3.08□□□□□ -1.92
NEDD4-208ENST00000508342 CUEDC2Q9H467 287 aa3.08□□□□□ -1.92
NEDD4-208ENST00000508342 ZSCAN32Q9NX65 697 aa3.08□□□□□ -1.92
NEDD4-208ENST00000508342 SIRPGQ9P1W8 387 aa3.08□□□□□ -1.92
NEDD4-208ENST00000508342 BCAP29Q9UHQ4 241 aa3.08□□□□□ -1.92
NEDD4-208ENST00000508342 KCNH3Q9ULD8 1083 aa3.08□□□□□ -1.92
NEDD4-208ENST00000508342 CLIC4Q9Y696 253 aa3.08□□□□□ -1.92
NEDD4-208ENST00000508342 A0A1B0GVL5 298 aa3.08□□□□□ -1.92
NEDD4-208ENST00000508342 FAM47E-STBD1D6RA91 191 aa3.08□□□□□ -1.92
NEDD4-208ENST00000508342 CIB2O75838 187 aa3.08□□□□□ -1.92
NEDD4-208ENST00000508342 ASS1P00966 412 aaKnown RBP3.08□□□□□ -1.92
NEDD4-208ENST00000508342 ATP5BP06576 529 aaKnown RBP3.08□□□□□ -1.92
NEDD4-208ENST00000508342 DCNP07585 359 aaKnown RBP3.08□□□□□ -1.92
NEDD4-208ENST00000508342 MCF2P10911 925 aa3.08□□□□□ -1.92
NEDD4-208ENST00000508342 TBXAS1P24557 533 aaPredicted RBP3.08□□□□□ -1.92
NEDD4-208ENST00000508342 WASP42768 502 aa3.08□□□□□ -1.92
NEDD4-208ENST00000508342 VAMP7P51809 220 aa3.08□□□□□ -1.92
NEDD4-208ENST00000508342 COG7P83436 770 aa3.08□□□□□ -1.92
NEDD4-208ENST00000508342 NR5A1Q13285 461 aa3.08□□□□□ -1.92
NEDD4-208ENST00000508342 PLCL1Q15111 1095 aa3.08□□□□□ -1.92
NEDD4-208ENST00000508342 DNAJC21Q5F1R6 531 aaKnown RBP3.08□□□□□ -1.92
NEDD4-208ENST00000508342 RRM2BQ7LG56 351 aa3.08□□□□□ -1.92
NEDD4-208ENST00000508342 CPLX4Q7Z7G2 160 aa3.08□□□□□ -1.92
NEDD4-208ENST00000508342 SKAP1Q86WV1 359 aa3.08□□□□□ -1.92
NEDD4-208ENST00000508342 SFR1Q86XK3 245 aa3.08□□□□□ -1.92
NEDD4-208ENST00000508342 CCDC33Q8N5R6 958 aa3.08□□□□□ -1.92
NEDD4-208ENST00000508342 ZNF513Q8N8E2 541 aaPredicted RBP3.08□□□□□ -1.92
NEDD4-208ENST00000508342 MIPOL1Q8TD10 442 aa3.08□□□□□ -1.92
NEDD4-208ENST00000508342 P3H4Q92791 437 aa3.08□□□□□ -1.92
NEDD4-208ENST00000508342 ULK4Q96C45 1275 aa3.08□□□□□ -1.92
NEDD4-208ENST00000508342 LPIN3Q9BQK8 851 aa3.08□□□□□ -1.92
NEDD4-208ENST00000508342 VPS16Q9H269 839 aa3.08□□□□□ -1.92
NEDD4-208ENST00000508342 VCXQ9H320 206 aa3.08□□□□□ -1.92
NEDD4-208ENST00000508342 EXO5Q9H790 373 aa3.08□□□□□ -1.92
NEDD4-208ENST00000508342 LMAN1LQ9HAT1 526 aa3.08□□□□□ -1.92
NEDD4-208ENST00000508342 SMPD4Q9NXE4 827 aa3.08□□□□□ -1.92
NEDD4-208ENST00000508342 CACNA2D2Q9NY47 1150 aa3.08□□□□□ -1.92
NEDD4-208ENST00000508342 TUBA8Q9NY65 449 aaPredicted RBP3.08□□□□□ -1.92
NEDD4-208ENST00000508342 ADAM28Q9UKQ2 775 aa3.08□□□□□ -1.92
NEDD4-208ENST00000508342 KIAA0100Q14667 2235 aaKnown RBP3.08□□□□□ -1.92
NEDD4-208ENST00000508342 FAM170BA6NMN3 283 aa3.08□□□□□ -1.92
NEDD4-208ENST00000508342 EIF3CLB5ME19 914 aaKnown RBP3.08□□□□□ -1.92
NEDD4-208ENST00000508342 GOLGA8SH3BPF8 625 aa3.08□□□□□ -1.92
NEDD4-208ENST00000508342 NRP1O14786 923 aa3.08□□□□□ -1.92
NEDD4-208ENST00000508342 KHNYNO15037 678 aaKnown RBP3.08□□□□□ -1.92
NEDD4-208ENST00000508342 SLC26A4O43511 780 aa3.08□□□□□ -1.92
NEDD4-208ENST00000508342 SCP2P22307 547 aa3.08□□□□□ -1.92
NEDD4-208ENST00000508342 KPNA2P52292 529 aaKnown RBP3.08□□□□□ -1.92
NEDD4-208ENST00000508342 OXCT1P55809 520 aa3.08□□□□□ -1.92
NEDD4-208ENST00000508342 SP2Q02086 613 aa3.08□□□□□ -1.92
NEDD4-208ENST00000508342 SYTL3Q4VX76 610 aa3.08□□□□□ -1.92
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms