RNA–Protein interactions for RNA: ENST00000507778.1

HMGB1P28-201, Transcript of high mobility group box 1 pseudogene 28, humanhuman

BASIC

Gene HMGB1P28, Length 552 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P28-201ENST00000507778 LNX2Q8N448 690 aa4.78□□□□□ -1.64
HMGB1P28-201ENST00000507778 TOR1AIP2Q8NFQ8 470 aa4.78□□□□□ -1.64
HMGB1P28-201ENST00000507778 MYRIPQ8NFW9 859 aa4.78□□□□□ -1.64
HMGB1P28-201ENST00000507778 PROKR1Q8TCW9 393 aa4.78□□□□□ -1.64
HMGB1P28-201ENST00000507778 SSH3Q8TE77 659 aa4.78□□□□□ -1.64
HMGB1P28-201ENST00000507778 SH3RF3Q8TEJ3 882 aaPredicted RBP4.78□□□□□ -1.64
HMGB1P28-201ENST00000507778 ATG4AQ8WYN0 398 aa4.78□□□□□ -1.64
HMGB1P28-201ENST00000507778 LPIN2Q92539 896 aa4.78□□□□□ -1.64
HMGB1P28-201ENST00000507778 ZNF503Q96F45 646 aa4.78□□□□□ -1.64
HMGB1P28-201ENST00000507778 ZDHHC12Q96GR4 267 aa4.78□□□□□ -1.64
HMGB1P28-201ENST00000507778 PGBD1Q96JS3 809 aa4.78□□□□□ -1.64
HMGB1P28-201ENST00000507778 ZBTB45Q96K62 511 aaPredicted RBP4.78□□□□□ -1.64
HMGB1P28-201ENST00000507778 ZCWPW1Q9H0M4 648 aa4.78□□□□□ -1.64
HMGB1P28-201ENST00000507778 MYLK2Q9H1R3 596 aa4.78□□□□□ -1.64
HMGB1P28-201ENST00000507778 AGO4Q9HCK5 861 aaKnown RBP4.78□□□□□ -1.64
HMGB1P28-201ENST00000507778 CASS4Q9NQ75 786 aa4.78□□□□□ -1.64
HMGB1P28-201ENST00000507778 DACT1Q9NYF0 836 aa4.78□□□□□ -1.64
HMGB1P28-201ENST00000507778 LRFN1Q9P244 771 aa4.78□□□□□ -1.64
HMGB1P28-201ENST00000507778 USP22Q9UPT9 525 aa4.78□□□□□ -1.64
HMGB1P28-201ENST00000507778 REXO2Q9Y3B8 237 aaKnown RBP4.78□□□□□ -1.64
HMGB1P28-201ENST00000507778 SNX14Q9Y5W7 946 aa4.78□□□□□ -1.64
HMGB1P28-201ENST00000507778 PIPSLA2A3N6 862 aa4.77□□□□□ -1.65
HMGB1P28-201ENST00000507778 AQP12BA6NM10 295 aa4.77□□□□□ -1.65
HMGB1P28-201ENST00000507778 SYT5O00445 386 aa4.77□□□□□ -1.65
HMGB1P28-201ENST00000507778 TLR5O60602 858 aa4.77□□□□□ -1.65
HMGB1P28-201ENST00000507778 PDHA1P08559 390 aa4.77□□□□□ -1.65
HMGB1P28-201ENST00000507778 EGR2P11161 476 aaPredicted RBP4.77□□□□□ -1.65
HMGB1P28-201ENST00000507778 HGFP14210 728 aa4.77□□□□□ -1.65
HMGB1P28-201ENST00000507778 PECAM1P16284 738 aaPredicted RBP4.77□□□□□ -1.65
HMGB1P28-201ENST00000507778 SLC5A2P31639 672 aa4.77□□□□□ -1.65
HMGB1P28-201ENST00000507778 SERPINF1P36955 418 aa4.77□□□□□ -1.65
HMGB1P28-201ENST00000507778 PPM1FP49593 454 aaPredicted RBP4.77□□□□□ -1.65
HMGB1P28-201ENST00000507778 GATMP50440 423 aa4.77□□□□□ -1.65
HMGB1P28-201ENST00000507778 SP2Q02086 613 aa4.77□□□□□ -1.65
HMGB1P28-201ENST00000507778 NSUN2Q08J23 767 aaKnown RBP eCLIP4.77□□□□□ -1.65
HMGB1P28-201ENST00000507778 RAPGEF1Q13905 1077 aa4.77□□□□□ -1.65
HMGB1P28-201ENST00000507778 LY6G5CQ5SRR4 150 aa4.77□□□□□ -1.65
HMGB1P28-201ENST00000507778 VWA1Q6PCB0 445 aa4.77□□□□□ -1.65
HMGB1P28-201ENST00000507778 MRGPREQ86SM8 312 aa4.77□□□□□ -1.65
HMGB1P28-201ENST00000507778 CACNA2D3Q8IZS8 1091 aa4.77□□□□□ -1.65
HMGB1P28-201ENST00000507778 MYCBPAPQ8TBZ2 947 aa4.77□□□□□ -1.65
HMGB1P28-201ENST00000507778 FAM71BQ8TC56 605 aa4.77□□□□□ -1.65
HMGB1P28-201ENST00000507778 ABHD5Q8WTS1 349 aa4.77□□□□□ -1.65
HMGB1P28-201ENST00000507778 ASB10Q8WXI3 467 aa4.77□□□□□ -1.65
HMGB1P28-201ENST00000507778 SCLT1Q96NL6 688 aa4.77□□□□□ -1.65
HMGB1P28-201ENST00000507778 HIST1H2AAQ96QV6 131 aa4.77□□□□□ -1.65
HMGB1P28-201ENST00000507778 C17orf80Q9BSJ5 609 aa4.77□□□□□ -1.65
HMGB1P28-201ENST00000507778 PAGR1Q9BTK6 254 aa4.77□□□□□ -1.65
HMGB1P28-201ENST00000507778 WDR11Q9BZH6 1224 aa4.77□□□□□ -1.65
HMGB1P28-201ENST00000507778 INO80BQ9C086 356 aaPredicted RBP4.77□□□□□ -1.65
HMGB1P28-201ENST00000507778 SERHL2Q9H4I8 314 aa4.77□□□□□ -1.65
HMGB1P28-201ENST00000507778 GLOD4Q9HC38 313 aa4.77□□□□□ -1.65
HMGB1P28-201ENST00000507778 KCTD5Q9NXV2 234 aa4.77□□□□□ -1.65
HMGB1P28-201ENST00000507778 CA14Q9ULX7 337 aa4.77□□□□□ -1.65
HMGB1P28-201ENST00000507778 HS3ST4Q9Y661 456 aa4.77□□□□□ -1.65
HMGB1P28-201ENST00000507778 C1QTNF3-AMACRE9PGA6 284 aa4.76□□□□□ -1.65
HMGB1P28-201ENST00000507778 ACKR2O00590 384 aa4.76□□□□□ -1.65
HMGB1P28-201ENST00000507778 YY2O15391 372 aa4.76□□□□□ -1.65
HMGB1P28-201ENST00000507778 PROM1O43490 865 aa4.76□□□□□ -1.65
HMGB1P28-201ENST00000507778 SRGAP2BP0DMP2 458 aa4.76□□□□□ -1.65
HMGB1P28-201ENST00000507778 MST1P26927 711 aa4.76□□□□□ -1.65
HMGB1P28-201ENST00000507778 GPS1Q13098 491 aa4.76□□□□□ -1.65
HMGB1P28-201ENST00000507778 EIF2B5Q13144 721 aaKnown RBP4.76□□□□□ -1.65
HMGB1P28-201ENST00000507778 PTPAQ15257 358 aa4.76□□□□□ -1.65
HMGB1P28-201ENST00000507778 TBCCQ15814 346 aa4.76□□□□□ -1.65
HMGB1P28-201ENST00000507778 LY6KQ17RY6 165 aa4.76□□□□□ -1.65
HMGB1P28-201ENST00000507778 LSM12Q3MHD2 195 aaKnown RBP4.76□□□□□ -1.65
HMGB1P28-201ENST00000507778 C4orf46Q504U0 113 aa4.76□□□□□ -1.65
HMGB1P28-201ENST00000507778 MIIPQ5JXC2 388 aa4.76□□□□□ -1.65
HMGB1P28-201ENST00000507778 LCE4AQ5TA78 99 aa4.76□□□□□ -1.65
HMGB1P28-201ENST00000507778 SLC9A4Q6AI14 798 aa4.76□□□□□ -1.65
HMGB1P28-201ENST00000507778 SPRED1Q7Z699 444 aa4.76□□□□□ -1.65
HMGB1P28-201ENST00000507778 PRRT2Q7Z6L0 340 aaPredicted RBP4.76□□□□□ -1.65
HMGB1P28-201ENST00000507778 GATAD2AQ86YP4 633 aa4.76□□□□□ -1.65
HMGB1P28-201ENST00000507778 CPXCR1Q8N123 301 aa4.76□□□□□ -1.65
HMGB1P28-201ENST00000507778 STYXQ8WUJ0 223 aa4.76□□□□□ -1.65
HMGB1P28-201ENST00000507778 TRAPPC12Q8WVT3 735 aa4.76□□□□□ -1.65
HMGB1P28-201ENST00000507778 PPM1EQ8WY54 764 aa4.76□□□□□ -1.65
HMGB1P28-201ENST00000507778 TRIM63Q969Q1 353 aa4.76□□□□□ -1.65
HMGB1P28-201ENST00000507778 FKBP10Q96AY3 582 aa4.76□□□□□ -1.65
HMGB1P28-201ENST00000507778 Q96MF0 132 aa4.76□□□□□ -1.65
HMGB1P28-201ENST00000507778 PRPF18Q99633 342 aaKnown RBP4.76□□□□□ -1.65
HMGB1P28-201ENST00000507778 GPR20Q99678 358 aa4.76□□□□□ -1.65
HMGB1P28-201ENST00000507778 AIFM2Q9BRQ8 373 aa4.76□□□□□ -1.65
HMGB1P28-201ENST00000507778 MAGEH1Q9H213 219 aa4.76□□□□□ -1.65
HMGB1P28-201ENST00000507778 HELLSQ9NRZ9 838 aa4.76□□□□□ -1.65
HMGB1P28-201ENST00000507778 DTNAQ9Y4J8 743 aa4.76□□□□□ -1.65
HMGB1P28-201ENST00000507778 A1L4Q6 167 aa4.75□□□□□ -1.65
HMGB1P28-201ENST00000507778 OR2W5A6NFC9 320 aa4.75□□□□□ -1.65
HMGB1P28-201ENST00000507778 ZAR1LA6NP61 321 aa4.75□□□□□ -1.65
HMGB1P28-201ENST00000507778 B8ZZF3 427 aa4.75□□□□□ -1.65
HMGB1P28-201ENST00000507778 ADM5C9JUS6 153 aa4.75□□□□□ -1.65
HMGB1P28-201ENST00000507778 PRRG2O14669 202 aa4.75□□□□□ -1.65
HMGB1P28-201ENST00000507778 SLC16A3O15427 465 aaKnown RBP4.75□□□□□ -1.65
HMGB1P28-201ENST00000507778 PEX1O43933 1283 aa4.75□□□□□ -1.65
HMGB1P28-201ENST00000507778 TNFRSF6BO95407 300 aa4.75□□□□□ -1.65
HMGB1P28-201ENST00000507778 GLP2RO95838 553 aa4.75□□□□□ -1.65
HMGB1P28-201ENST00000507778 RHOP08100 348 aa4.75□□□□□ -1.65
HMGB1P28-201ENST00000507778 ITGA5P08648 1049 aa4.75□□□□□ -1.65
HMGB1P28-201ENST00000507778 ARP10275 920 aa4.75□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms