RNA–Protein interactions for RNA: ENST00000504627.1

SQSTM1-209, Transcript of sequestosome 1, humanhuman

TSL 5

Gene SQSTM1, Length 602 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-209ENST00000504627 RBM12Q9NTZ6 932 aaKnown RBP19.15■□□□□ 0.66
SQSTM1-209ENST00000504627 EHD2Q9NZN4 543 aa19.15■□□□□ 0.66
SQSTM1-209ENST00000504627 LIMA1Q9UHB6 759 aaKnown RBP19.15■□□□□ 0.66
SQSTM1-209ENST00000504627 FRMD4BQ9Y2L6 1034 aa19.15■□□□□ 0.66
SQSTM1-209ENST00000504627 PATJQ8NI35 1801 aa19.15■□□□□ 0.66
SQSTM1-209ENST00000504627 TADA3O75528 432 aa19.14■□□□□ 0.65
SQSTM1-209ENST00000504627 TPM3P06753 285 aa19.14■□□□□ 0.65
SQSTM1-209ENST00000504627 USP17L7P0C7H9 530 aa19.14■□□□□ 0.65
SQSTM1-209ENST00000504627 PTPN1P18031 435 aaKnown RBP19.14■□□□□ 0.65
SQSTM1-209ENST00000504627 CXCL12P48061 93 aa19.14■□□□□ 0.65
SQSTM1-209ENST00000504627 MARSP56192 900 aaKnown RBP19.14■□□□□ 0.65
SQSTM1-209ENST00000504627 RUNX3Q13761 415 aa19.14■□□□□ 0.65
SQSTM1-209ENST00000504627 NCOA4Q13772 614 aa19.14■□□□□ 0.65
SQSTM1-209ENST00000504627 ZNF268Q14587 947 aaPredicted RBP19.14■□□□□ 0.65
SQSTM1-209ENST00000504627 ZNF667Q5HYK9 610 aa19.14■□□□□ 0.65
SQSTM1-209ENST00000504627 TDRD10Q5VZ19 366 aaKnown RBP19.14■□□□□ 0.65
SQSTM1-209ENST00000504627 CEP135Q66GS9 1140 aa19.14■□□□□ 0.65
SQSTM1-209ENST00000504627 TRIM68Q6AZZ1 485 aa19.14■□□□□ 0.65
SQSTM1-209ENST00000504627 MAMSTRQ6ZN01 415 aa19.14■□□□□ 0.65
SQSTM1-209ENST00000504627 FILIP1Q7Z7B0 1213 aa19.14■□□□□ 0.65
SQSTM1-209ENST00000504627 ZBTB44Q8NCP5 570 aa19.14■□□□□ 0.65
SQSTM1-209ENST00000504627 PLEKHO2Q8TD55 490 aa19.14■□□□□ 0.65
SQSTM1-209ENST00000504627 RUBCNQ92622 972 aa19.14■□□□□ 0.65
SQSTM1-209ENST00000504627 CYP2S1Q96SQ9 504 aa19.14■□□□□ 0.65
SQSTM1-209ENST00000504627 FAM83CQ9BQN1 747 aa19.14■□□□□ 0.65
SQSTM1-209ENST00000504627 TRIM5Q9C035 493 aa19.14■□□□□ 0.65
SQSTM1-209ENST00000504627 EBF3Q9H4W6 596 aa19.14■□□□□ 0.65
SQSTM1-209ENST00000504627 DMAC2Q9NW81 257 aa19.14■□□□□ 0.65
SQSTM1-209ENST00000504627 EP300Q09472 2414 aaPredicted RBP19.14■□□□□ 0.65
SQSTM1-209ENST00000504627 WDR87Q6ZQQ6 2873 aa19.14■□□□□ 0.65
SQSTM1-209ENST00000504627 AP5Z1O43299 807 aa19.13■□□□□ 0.65
SQSTM1-209ENST00000504627 SERPINC1P01008 464 aa19.13■□□□□ 0.65
SQSTM1-209ENST00000504627 ZNF75DP51815 510 aa19.13■□□□□ 0.65
SQSTM1-209ENST00000504627 AMPD2Q01433 879 aa19.13■□□□□ 0.65
SQSTM1-209ENST00000504627 ADAM9Q13443 819 aa19.13■□□□□ 0.65
SQSTM1-209ENST00000504627 HSP90AA4PQ58FG1 418 aa19.13■□□□□ 0.65
SQSTM1-209ENST00000504627 APTXQ7Z2E3 356 aaKnown RBP19.13■□□□□ 0.65
SQSTM1-209ENST00000504627 SPEM1Q8N4L4 309 aa19.13■□□□□ 0.65
SQSTM1-209ENST00000504627 ARL14EPQ8N8R7 260 aaPredicted RBP19.13■□□□□ 0.65
SQSTM1-209ENST00000504627 MRFAP1L1Q96HT8 127 aa19.13■□□□□ 0.65
SQSTM1-209ENST00000504627 XYLT2Q9H1B5 865 aa19.13■□□□□ 0.65
SQSTM1-209ENST00000504627 DPEP3Q9H4B8 488 aa19.13■□□□□ 0.65
SQSTM1-209ENST00000504627 TRPM5Q9NZQ8 1165 aa19.13■□□□□ 0.65
SQSTM1-209ENST00000504627 GVINP1Q7Z2Y8 2422 aa19.12■□□□□ 0.65
SQSTM1-209ENST00000504627 F8VP50 259 aa19.12■□□□□ 0.65
SQSTM1-209ENST00000504627 ADCY5O95622 1261 aa19.12■□□□□ 0.65
SQSTM1-209ENST00000504627 C4BPAP04003 597 aaKnown RBP19.12■□□□□ 0.65
SQSTM1-209ENST00000504627 EPB41P11171 864 aaKnown RBP19.12■□□□□ 0.65
SQSTM1-209ENST00000504627 P4HA1P13674 534 aa19.12■□□□□ 0.65
SQSTM1-209ENST00000504627 HDCP19113 662 aa19.12■□□□□ 0.65
SQSTM1-209ENST00000504627 PDE6CP51160 858 aa19.12■□□□□ 0.65
SQSTM1-209ENST00000504627 CLDN10P78369 228 aa19.12■□□□□ 0.65
SQSTM1-209ENST00000504627 SATB1Q01826 763 aa19.12■□□□□ 0.65
SQSTM1-209ENST00000504627 GAS6Q14393 721 aa19.12■□□□□ 0.65
SQSTM1-209ENST00000504627 MTF1Q14872 753 aa19.12■□□□□ 0.65
SQSTM1-209ENST00000504627 PDGFRLQ15198 375 aa19.12■□□□□ 0.65
SQSTM1-209ENST00000504627 KRT31Q15323 416 aa19.12■□□□□ 0.65
SQSTM1-209ENST00000504627 SCARA5Q6ZMJ2 495 aa19.12■□□□□ 0.65
SQSTM1-209ENST00000504627 B3GALNT2Q8NCR0 500 aa19.12■□□□□ 0.65
SQSTM1-209ENST00000504627 NELL1Q92832 810 aa19.12■□□□□ 0.65
SQSTM1-209ENST00000504627 C8orf48Q96LL4 319 aa19.12■□□□□ 0.65
SQSTM1-209ENST00000504627 SLC22A12Q96S37 553 aa19.12■□□□□ 0.65
SQSTM1-209ENST00000504627 ELOVL4Q9GZR5 314 aa19.12■□□□□ 0.65
SQSTM1-209ENST00000504627 SMYD3Q9H7B4 428 aa19.12■□□□□ 0.65
SQSTM1-209ENST00000504627 HPS4Q9NQG7 708 aa19.12■□□□□ 0.65
SQSTM1-209ENST00000504627 NCDNQ9UBB6 729 aa19.12■□□□□ 0.65
SQSTM1-209ENST00000504627 NME7Q9Y5B8 376 aa19.12■□□□□ 0.65
SQSTM1-209ENST00000504627 ZNF638Q14966 1978 aaKnown RBP19.12■□□□□ 0.65
SQSTM1-209ENST00000504627 A0A1B0GTH6 734 aa19.11■□□□□ 0.65
SQSTM1-209ENST00000504627 C2orf78A6NCI8 922 aa19.11■□□□□ 0.65
SQSTM1-209ENST00000504627 LRRC10BA6NIK2 292 aa19.11■□□□□ 0.65
SQSTM1-209ENST00000504627 ABL1P00519 1130 aa19.11■□□□□ 0.65
SQSTM1-209ENST00000504627 TPM2P07951 284 aa19.11■□□□□ 0.65
SQSTM1-209ENST00000504627 CDC25BP30305 580 aa19.11■□□□□ 0.65
SQSTM1-209ENST00000504627 IFNAR2P48551 515 aa19.11■□□□□ 0.65
SQSTM1-209ENST00000504627 CDH8P55286 799 aa19.11■□□□□ 0.65
SQSTM1-209ENST00000504627 UBASH3AP57075 661 aa19.11■□□□□ 0.65
SQSTM1-209ENST00000504627 USP46P62068 366 aa19.11■□□□□ 0.65
SQSTM1-209ENST00000504627 DLG4P78352 724 aa19.11■□□□□ 0.65
SQSTM1-209ENST00000504627 CCDC173Q0VFZ6 552 aa19.11■□□□□ 0.65
SQSTM1-209ENST00000504627 IFRD2Q12894 506 aaPredicted RBP19.11■□□□□ 0.65
SQSTM1-209ENST00000504627 CCDC40Q4G0X9 1142 aa19.11■□□□□ 0.65
SQSTM1-209ENST00000504627 FILIP1LQ4L180 1135 aa19.11■□□□□ 0.65
SQSTM1-209ENST00000504627 Q6ZS52 159 aa19.11■□□□□ 0.65
SQSTM1-209ENST00000504627 ARHGAP30Q7Z6I6 1101 aaPredicted RBP19.11■□□□□ 0.65
SQSTM1-209ENST00000504627 KIAA2013Q8IYS2 634 aa19.11■□□□□ 0.65
SQSTM1-209ENST00000504627 SYNPOQ8N3V7 929 aa19.11■□□□□ 0.65
SQSTM1-209ENST00000504627 SUMF1Q8NBK3 374 aa19.11■□□□□ 0.65
SQSTM1-209ENST00000504627 TNIP3Q96KP6 325 aa19.11■□□□□ 0.65
SQSTM1-209ENST00000504627 MED10Q9BTT4 135 aa19.11■□□□□ 0.65
SQSTM1-209ENST00000504627 ZNF518BQ9C0D4 1074 aa19.11■□□□□ 0.65
SQSTM1-209ENST00000504627 VRTNQ9H8Y1 702 aa19.11■□□□□ 0.65
SQSTM1-209ENST00000504627 METTL14Q9HCE5 456 aaKnown RBP19.11■□□□□ 0.65
SQSTM1-209ENST00000504627 DUS2Q9NX74 493 aaKnown RBP19.11■□□□□ 0.65
SQSTM1-209ENST00000504627 IFNKQ9P0W0 207 aa19.11■□□□□ 0.65
SQSTM1-209ENST00000504627 FANCMQ8IYD8 2048 aa19.11■□□□□ 0.65
SQSTM1-209ENST00000504627 DENND4CQ5VZ89 1909 aa19.1■□□□□ 0.65
SQSTM1-209ENST00000504627 ATP8B3O60423 1300 aa19.1■□□□□ 0.65
SQSTM1-209ENST00000504627 MAPK13O15264 365 aa19.1■□□□□ 0.65
SQSTM1-209ENST00000504627 LILRB5O75023 590 aa19.1■□□□□ 0.65
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms